mRNA_H-elongata_contig16945.4308.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 122 bits (307), Expect = 8.370e-34 Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 1
Query: 1 MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQV 291
MDGHVIARST Y + I+A+ AC L+CKWP +D AA+ F+ RS+ VV KC GAMD LFVRM +P+ E AEPN YY+GHK+GFGMNFQV
Sbjct: 31 MDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDA-ARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 125 bits (313), Expect = 6.320e-32 Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 1 MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQ-VLDSNHSSIALMQH 330
MDGHVIARST Y + I+A+ AC L+CKWP +D AA+ F+ RS+ VV KC GA DGLFVRM +P+ E AEPN YY+GHK+GFGMNFQ V D+ + +A M +
Sbjct: 117 MDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDA-ARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMN 226
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 117 bits (292), Expect = 5.250e-29 Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 1 MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQVLDSN 303
MDGHVIARST Y + I+A+ AC L+CKWP +D + E + VV KC GAMDGLFVRM +P+ E AEPN YY+GHK+GFGMNFQV N
Sbjct: 128 MDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED-LPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQVCSQN 227
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.900e-28 Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 1 MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQ-VLDSNHSSIA 318
MDG+VIARST YAI HR IDAI LDC WP +D + + ++ RS GV+ C GAMDGLFVRM +P+ P S+YSGHK+GFGMNFQ V ++ + IA
Sbjct: 124 MDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIA 229
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.920e-26 Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 1
Query: 1 MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQVL 294
MD +VIA+ST YAI HR IDAI L+CKWP DD +A + ++ RS GV+ +C GAMDGLFVR+ P A P S+YSGHK+ FGMNFQ +
Sbjct: 128 MDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQA-ELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGI 224
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE) HSP 1 Score: 108 bits (271), Expect = 2.380e-25 Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 1 MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQVLDS 300
MD HVIARST Y I+A+ ACS ++CKWP +D AA+ F+ RS+ VV KC GAMDG FVRM +P+ E EPN +GHK+GFG NFQ ++
Sbjct: 1 MDDHVIARSTAYHETSTVINALNACSEVNCKWPEGEDA-ARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQAANT 99
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.800e-23 Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 1
Query: 1 MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQVL 294
MDG V A+ST YAI +R IDAI DC WP DD + + +++RS V+ C GAMDGLFV + P+ P +YSGHK+GFGMNFQ +
Sbjct: 58 MDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCG-VYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAV 154
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.240e-20 Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 1 MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRG 270
MDGHVIARST Y + I+A+ AC L+CKWP + VV KC GAMDGLFVRM +P+ E AEPN YY+GH++G
Sbjct: 128 MDGHVIARSTAYHVTSTVINALNACPELNCKWPE---------------ARMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.080e-13 Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 160 VVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQ-VLDSNHSSIA 318
VV KC GAMDGLFVRM +P+ E AEPN YY+GHK GFGMNFQ V D+ + +A
Sbjct: 17 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVA 70
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Match: A0A6T6LH99_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6LH99_9RHOD) HSP 1 Score: 68.9 bits (167), Expect = 2.340e-11 Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 1
Query: 16 IARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSAYGVVDKCFGAMDGLFVRMKRPTRNETAEPNSYYSGHKRGFGMNFQV 291
++RS Y R ++AI C L +P DE+ +AKAF + S V+ C +DG +K P+R+ETA SY+SGH + +G+N Q
Sbjct: 135 LSRSGFYMCVKRGMEAILNCDELAYHFPVELDEVEASAKAFSKYSTNEVITGCVACIDGFLCEIKTPSRSETANVRSYFSGHYQLYGINIQA 226 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16945.4308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16945.4308.1 >prot_H-elongata_contig16945.4308.1 ID=prot_H-elongata_contig16945.4308.1|Name=mRNA_H-elongata_contig16945.4308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp MDGHVIARSTVYAIAHRAIDAITACSGLDCKWPNNDDEIVEAAKAFKERSback to top mRNA from alignment at H-elongata_contig16945:6136..6468- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16945.4308.1 ID=mRNA_H-elongata_contig16945.4308.1|Name=mRNA_H-elongata_contig16945.4308.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig16945:6136..6468- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16945:6136..6468- >mRNA_H-elongata_contig16945.4308.1 ID=mRNA_H-elongata_contig16945.4308.1|Name=mRNA_H-elongata_contig16945.4308.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig16945:6136..6468- (Himanthalia elongata Himel1 dioecious)back to top |