mRNA_H-elongata_contig169386.4307.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169386.4307.1
Unique NamemRNA_H-elongata_contig169386.4307.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169386.4307.1 vs. uniprot
Match: D7FMS9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS9_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 7.320e-40
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    1 MEGMQIKKTYGFWTWQVFGFIFVQNFVRLLVRKGGDLKKLTMEEINWDHVVTEPEHLKELKAYCCEECGYTLYPARG 231
            M+G+ IKKTYGFWTWQVFGFIFVQ+FVR LVRKGG LKK +M E+ WDH+VTEPEHL ELKAYCCEECGYTL+PARG
Sbjct:  185 MDGLVIKKTYGFWTWQVFGFIFVQHFVRNLVRKGGSLKKTSMSELKWDHIVTEPEHLLELKAYCCEECGYTLFPARG 261
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BLAST of mRNA_H-elongata_contig169386.4307.1 vs. uniprot
Match: A0A836CG96_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG96_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.760e-12
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   58 FIFVQNFVRLLVRKGGDLKKLTMEEINWDHVVTEPEHLKELKAYCCEECGYTLYPAR 228
            F+ VQ F+   VRKG  ++++   E+ W+++VTE EH+KEL AY CE+CGYTL+PAR
Sbjct:   12 FVIVQFFITW-VRKGFSIRRVMAPELKWEYLVTEKEHIKELHAYRCEQCGYTLFPAR 67
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BLAST of mRNA_H-elongata_contig169386.4307.1 vs. uniprot
Match: A0A7S2D095_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D095_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 5.220e-5
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:   22 KTYGFWTWQVFGFIFVQNFVRLL-VRKGGDLKKLTMEEINWDHVVTEPEHLKELKAYCCEECGYTLYPARG 231
            KT   WT    G IF    V+++ +   G+L+    EE N+ ++        EL  +CCE CGYT++PARG
Sbjct:  121 KTSFLWT----GIIFTLLIVKIVRMAAAGNLRAAFFEEPNYKYIARSDAEEAELHEFCCETCGYTMFPARG 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169386.4307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMS9_ECTSI7.320e-4081.82Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A836CG96_9STRA2.760e-1252.63Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2D095_9EUKA5.220e-536.62Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169386contigH-elongata_contig169386:240..963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue6.2e-33
Seed eggNOG ortholog2880.D7FMS9
EggNOG OGs2CZ9B@1,2S968@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRubredoxin-type fold
Ec32 orthologEc-21_000280.1
Exons2
Model size252
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.4172635-CDS-H-elongata_contig169386:239..3921622929988.4172635-CDS-H-elongata_contig169386:239..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169386 240..392 -
1691679236.2976782-CDS-H-elongata_contig169386:239..3921691679236.2976782-CDS-H-elongata_contig169386:239..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169386 240..392 -
1622929988.4329462-CDS-H-elongata_contig169386:864..9631622929988.4329462-CDS-H-elongata_contig169386:864..963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169386 865..963 -
1691679236.3065252-CDS-H-elongata_contig169386:864..9631691679236.3065252-CDS-H-elongata_contig169386:864..963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169386 865..963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169386.4307.1prot_H-elongata_contig169386.4307.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169386 240..963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169386.4307.1

>prot_H-elongata_contig169386.4307.1 ID=prot_H-elongata_contig169386.4307.1|Name=mRNA_H-elongata_contig169386.4307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MEGMQIKKTYGFWTWQVFGFIFVQNFVRLLVRKGGDLKKLTMEEINWDHV
VTEPEHLKELKAYCCEECGYTLYPARGINNNGA*
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mRNA from alignment at H-elongata_contig169386:240..963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169386.4307.1 ID=mRNA_H-elongata_contig169386.4307.1|Name=mRNA_H-elongata_contig169386.4307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=724bp|location=Sequence derived from alignment at H-elongata_contig169386:240..963- (Himanthalia elongata Himel1 dioecious)
ATGGAGGGGATGCAGATCAAGAAAACGTACGGTTTCTGGACGTGGCAAGT
GTTCGGGTTCATCTTCGTCCAGAACTTCGTCAGACTTCTCGTTCGCAAGG
TGACCGGTCATGGTGGTCCGCCGAACATCTGGTAGCCTTAATGTGGACAG
TCCTTCGCGACTCGCGGGTTTTGTTATTCACGGTGAAGGCGAGGGGAATG
AGGGTAGCCCTAAATATGACATACCTGATATATCTATATATATTGTTTTT
TTCCTTCCTTCCGATGAGATAGACTTCCGTATTACAGAAATACCTCCTCG
CTATGGACGCATTTTTTTACGGTCCACAAGGTACAGCTTTACGTAAAAAT
GACTCGTTTGTTTCTCGCGGTAATCCTTGAAATATGACACCATGACCGTC
ACGCCTGGGATGGTTGGAAACCCGCTGACACATCCGTGGCCTGTCATTCT
TCATTCCTTTTCTTATGTCATGAGCGCGATATTTCTTACACTCCTTTATT
TTCTCTCTCTTTCACACACACACTCTCTGTGTTGCGGGGGGGGTCTTGAT
GGGTACCGTGGGTGGCGGCAGGGTGGCGACTTGAAGAAACTGACGATGGA
GGAGATCAACTGGGACCACGTAGTCACCGAGCCGGAACACCTGAAGGAGC
TGAAGGCGTATTGTTGCGAGGAGTGCGGTTACACTCTGTACCCTGCCCGA
GGTATTAATAATAATGGTGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig169386:240..963-

>mRNA_H-elongata_contig169386.4307.1 ID=mRNA_H-elongata_contig169386.4307.1|Name=mRNA_H-elongata_contig169386.4307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig169386:240..963- (Himanthalia elongata Himel1 dioecious)
ATGGAGGGGATGCAGATCAAGAAAACGTACGGTTTCTGGACGTGGCAAGT
GTTCGGGTTCATCTTCGTCCAGAACTTCGTCAGACTTCTCGTTCGCAAGA
TGGAGGGGATGCAGATCAAGAAAACGTACGGTTTCTGGACGTGGCAAGTG
TTCGGGTTCATCTTCGTCCAGAACTTCGTCAGACTTCTCGTTCGCAAGGG
TGGCGACTTGAAGAAACTGACGATGGAGGAGATCAACTGGGACCACGTAG
TCACCGAGCCGGAACACCTGAAGGAGCTGAAGGCGTATTGTTGCGAGGAG
TGCGGTTACACTCTGTACCCTGCCCGAGGTATTAATAATAATGGTGCATA
AGGTGGCGACTTGAAGAAACTGACGATGGAGGAGATCAACTGGGACCACG
TAGTCACCGAGCCGGAACACCTGAAGGAGCTGAAGGCGTATTGTTGCGAG
GAGTGCGGTTACACTCTGTACCCTGCCCGAGGTATTAATAATAATGGTGC
ATAA
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