mRNA_H-elongata_contig169266.4303.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 146 bits (369), Expect = 3.380e-38 Identity = 91/234 (38.89%), Postives = 124/234 (52.99%), Query Frame = 1
Query: 13 HQVLGHPAEQITRNTVRMAGVQLSG-IWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPE-GLKIGVIRTDGGGDWHGQFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPF 693
H GH E++ + T + GVQL+G PC+ CS S+ + + ST+ RA + RLF++ G S+ N + ++ DD TR+ V FLK KSDA A ++DY A ++ V RTDGGG++ GQF GIK+E TPP TP YNGV ERALGLL D +A E D LWAEA++ AC N + + SP EL++G P + PF
Sbjct: 139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 144 bits (364), Expect = 5.500e-38 Identity = 88/248 (35.48%), Postives = 127/248 (51.21%), Query Frame = 1
Query: 1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
I + H + H E + R T + G +L G C CS S+ R + T+ R+D++ R+F D G S+ + ++ DDFTR + FL+ KSDA +A R ++ A G+ + ++R+D GG + G F S EL IK+E TP Y+P YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N + + SPYE+WYG P PF Y R
Sbjct: 34 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCR 279
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 149 bits (375), Expect = 2.150e-37 Identity = 83/230 (36.09%), Postives = 128/230 (55.65%), Query Frame = 1
Query: 1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYG 660
+ + H + H E + R T + G++L+G C CS S+ + + + T+ R+D++ R+F+D G S+ + M+ DDFTR + FLK KSDA +A R ++ A +G+ + ++R+D GG++ G +F S EL IK+E TP Y+P YNGV ER LGL+ +A L V K+DRLWAEAM +AC+ N + + SPYE+W+G
Sbjct: 572 VNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHG 800
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 146 bits (368), Expect = 4.600e-37 Identity = 90/249 (36.14%), Postives = 129/249 (51.81%), Query Frame = 1
Query: 1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFA---PEGLKIGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
I + H + H E + R T + G +L G C CS S+ R + T+ R+D++ R+F+D G S+ + M+ DDFTR + FLK +SDA A R ++ A P ++I +R+D GG++ G +F S EL IK+E TP Y+P YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N + + SPYE+WYG P PF Y R
Sbjct: 254 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCR 499
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 147 bits (372), Expect = 5.950e-37 Identity = 89/248 (35.89%), Postives = 130/248 (52.42%), Query Frame = 1
Query: 1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
I + H + H E + R T + G +L G C CS S+ R + T+ R+D++ R+F+D G S+ + M+ DDFTR + FL+ KSDA +A R ++ A G+ + ++R+D GG++ G +F S EL IK+E TP Y+P YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N + + SPYE+WYG P PF Y R
Sbjct: 187 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCR 432
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 147 bits (372), Expect = 6.010e-37 Identity = 83/226 (36.73%), Postives = 128/226 (56.64%), Query Frame = 1
Query: 13 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYG 660
H + GH E + R T + G++L+G C CS + R A+ + T N +D++ R+F++ G S+ + M+ DDFTR + FL+ KSDA +A R +++ A +G+ I ++R+D GG++ G +F S EL IK+E TP ++P +NGV ER LGL+ + +A L V K+DRLWAEAM +AC+ N + + SPYE+WYG
Sbjct: 397 HNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYG 621
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.370e-36 Identity = 88/248 (35.48%), Postives = 129/248 (52.02%), Query Frame = 1
Query: 1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
I + H + H E + R T + G +L G C CS S+ R + T+ R+D++ R+F+D G S+ + M+ DDFTR + FL+ KSDA +A R ++ A G+ + ++R+D GG++ G +F S EL IK+E TP Y+P YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N + + PYE+WYG P PF Y R
Sbjct: 132 INEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCR 377
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.500e-36 Identity = 86/248 (34.68%), Postives = 131/248 (52.82%), Query Frame = 1
Query: 1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
+ + H + H + + R T + G +L G C CS ++ + + T++R+D++ R+F+D G S+ + M+ DDFTR + FLK KSDA A R ++ A +G+ + ++R+D GG++ G +F S EL IK+E TP Y+P YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N + + SPYE+WYG P PF Y R
Sbjct: 666 VNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCR 911
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.520e-36 Identity = 86/248 (34.68%), Postives = 131/248 (52.82%), Query Frame = 1
Query: 1 IMKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
+ + H + H + + R T + G +L G C CS ++ + + T++R+D++ R+F+D G S+ + M+ DDFTR + FLK KSDA A R ++ A +G+ + ++R+D GG++ G +F S EL IK+E TP Y+P YNGV ER LGL+ + +A L V K+D+LWAEAM +AC+ N + + SPYE+WYG P PF Y R
Sbjct: 373 VNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCR 618
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.090e-34 Identity = 86/243 (35.39%), Postives = 129/243 (53.09%), Query Frame = 1
Query: 13 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK-IGVIRTDGGGDW-HGQFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 714
H GH E + R T + G L G + C+ CS ++ +PN T RA ++ QR F++ SG SL + ++ DD+TR+ V FLK KSDA A + + A + V+R+D GG++ G+F + IK+E TP ++P YNGV ERALGL++D +A L G +S LWAEA+A++C+ N +++ S SPYE+W+G P PP T +L+
Sbjct: 312 HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLK 547 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig169266.4303.1 >prot_H-elongata_contig169266.4303.1 ID=prot_H-elongata_contig169266.4303.1|Name=mRNA_H-elongata_contig169266.4303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp MKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTback to top mRNA from alignment at H-elongata_contig169266:314..1027+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig169266.4303.1 ID=mRNA_H-elongata_contig169266.4303.1|Name=mRNA_H-elongata_contig169266.4303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=714bp|location=Sequence derived from alignment at H-elongata_contig169266:314..1027+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig169266:314..1027+ >mRNA_H-elongata_contig169266.4303.1 ID=mRNA_H-elongata_contig169266.4303.1|Name=mRNA_H-elongata_contig169266.4303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig169266:314..1027+ (Himanthalia elongata Himel1 dioecious)back to top |