mRNA_H-elongata_contig169251.4302.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169251.4302.1
Unique NamemRNA_H-elongata_contig169251.4302.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: A0A6P8H386_ACTTE (uncharacterized protein LOC116287377 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H386_ACTTE)

HSP 1 Score: 53.9 bits (128), Expect = 2.100e-7
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   13 KSSILLRWKEWFQELLNAKSPT--LDASILDGIEHLPEHAPLAA-EPTLEEVKEAVGKLGNGKAVGFDNVCGELLK 231
            KS +   W E F+E+ N + P   + +   +G E       +A  EPT+ EVKEAV KL NGKA+G DN+  ELLK
Sbjct:   33 KSEVQATWMEHFKEVPNREQPANPITSEEENGFEFSAVMEEIAVNEPTIGEVKEAVKKLKNGKALGIDNITAELLK 108          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E)

HSP 1 Score: 56.2 bits (134), Expect = 2.270e-7
Identity = 35/79 (44.30%), Postives = 42/79 (53.16%), Query Frame = 1
Query:    1 LLRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGFDNVCGELLKLG 237
            LL  K  +L RW E F  LLN      D   L  +  LP+   L   P+L+EV EA+    N KAVG DN+ GELLK G
Sbjct:  462 LLVSKEDVLNRWSEHFNNLLNVDR-LADFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELLKYG 539          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: A0A8M1KV33_CLUHA (zinc finger protein 883-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KV33_CLUHA)

HSP 1 Score: 55.8 bits (133), Expect = 3.050e-7
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    4 LRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGFDNVCGELLKLG 237
            L+ +SS+L RW E F  LLN  S   D +ILD +  LP    L   PT  EV  AV  L N K+ G DN+  ELLK G
Sbjct:   52 LKDQSSVLERWAEHFNTLLNRDSEA-DHTILDQLPELPPIDILNQPPTFLEVLSAVRSLKNNKSPGMDNIPAELLKQG 128          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: UPI001F5F87EB (uncharacterized protein LOC124805420 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F87EB)

HSP 1 Score: 55.1 bits (131), Expect = 4.310e-7
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LLRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGFDNVCGELLKL 234
            LL  +S I  RWKE+F ELLNA  PT+  S  D  E+L    P   EP+L E+KE++ KL   KA G D +  ++ KL
Sbjct:  155 LLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGIDTDIWKL 229          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: UPI001F5E8EE8 (uncharacterized protein LOC124719790 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E8EE8)

HSP 1 Score: 55.1 bits (131), Expect = 4.530e-7
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LLRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGFDNVCGELLKL 234
            LL  +S I  RWKE+F ELLNA  PT+  S  D  E+L    P   EP+L E+KE++ KL   KA G D +  ++ KL
Sbjct:  155 LLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGIDTDIWKL 229          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: UPI001F5F24CA (uncharacterized protein LOC124777988 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F24CA)

HSP 1 Score: 55.1 bits (131), Expect = 4.880e-7
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LLRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGFDNVCGELLKL 234
            LL  +S I  RWKE+F ELLNA  PT+  S  D  E+L    P   EP+L E+KE++ KL   KA G D +  ++ KL
Sbjct:  155 LLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGIDTDIWKL 229          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: UPI001F5FE6C3 (uncharacterized protein LOC124795698 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5FE6C3)

HSP 1 Score: 55.1 bits (131), Expect = 5.440e-7
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LLRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGFDNVCGELLKL 234
            LL  +S I  RWKE+F ELLNA  PT+  S  D  E+L    P   EP+L E+KE++ KL   KA G D +  ++ KL
Sbjct:  204 LLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGIDTDIWKL 278          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: UPI001F5F0EE2 (uncharacterized protein LOC124719631 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F0EE2)

HSP 1 Score: 55.1 bits (131), Expect = 5.900e-7
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LLRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGFDNVCGELLKL 234
            LL  +S I  RWKE+F ELLNA  PT+  S  D  E+L    P   EP+L E+KE++ KL   KA G D +  ++ KL
Sbjct:  839 LLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGIDTDIWKL 913          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: UPI001F5E4078 (uncharacterized protein LOC124718771 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E4078)

HSP 1 Score: 54.7 bits (130), Expect = 7.890e-7
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LLRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTLEEVKEAVGKLGNGKAVGFDNVCGELLKL 234
            LL  +S I  RWKE+F ELLNA  PT+  S  D  E+L    P   EP+L E+KE++ KL   KA G D +  ++ KL
Sbjct:  480 LLTERSDIANRWKEYFNELLNA--PTISISQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGIDTDIWKL 554          
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Match: A0A8B6E1J6_MYTGA (Blast:Craniofacial development protein 2 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6E1J6_MYTGA)

HSP 1 Score: 54.3 bits (129), Expect = 1.060e-6
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   25 LLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEP-TLEEVKEAVGKLGNGKAVGFDNVCGELLK 231
            L RWKE F+E+LNAK P + A I     H  +   +  EP T+EE+ +++  L NGKA G DN+  ELLK
Sbjct:   59 LERWKEHFEEILNAKDPPVLADI-----HPSDVVDMNIEPPTIEEIIKSIKALSNGKAPGIDNIQAELLK 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169251.4302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P8H386_ACTTE2.100e-743.42uncharacterized protein LOC116287377 n=1 Tax=Actin... [more]
UPI001F135E6E2.270e-744.30uncharacterized protein LOC124542503 n=1 Tax=Vanes... [more]
A0A8M1KV33_CLUHA3.050e-746.15zinc finger protein 883-like n=1 Tax=Clupea hareng... [more]
UPI001F5F87EB4.310e-744.87uncharacterized protein LOC124805420 n=1 Tax=Schis... [more]
UPI001F5E8EE84.530e-744.87uncharacterized protein LOC124719790 n=1 Tax=Schis... [more]
UPI001F5F24CA4.880e-744.87uncharacterized protein LOC124777988 n=1 Tax=Schis... [more]
UPI001F5FE6C35.440e-744.87uncharacterized protein LOC124795698 n=1 Tax=Schis... [more]
UPI001F5F0EE25.900e-744.87uncharacterized protein LOC124719631 n=1 Tax=Schis... [more]
UPI001F5E40787.890e-744.87uncharacterized protein LOC124718771 n=1 Tax=Schis... [more]
A0A8B6E1J6_MYTGA1.060e-645.71Blast:Craniofacial development protein 2 n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169251contigH-elongata_contig169251:1110..1346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.0911012-CDS-H-elongata_contig169251:1109..13461622929988.0911012-CDS-H-elongata_contig169251:1109..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169251 1110..1346 +
1691679236.1806455-CDS-H-elongata_contig169251:1109..13461691679236.1806455-CDS-H-elongata_contig169251:1109..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169251 1110..1346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169251.4302.1prot_H-elongata_contig169251.4302.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169251 1110..1346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169251.4302.1

>prot_H-elongata_contig169251.4302.1 ID=prot_H-elongata_contig169251.4302.1|Name=mRNA_H-elongata_contig169251.4302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
LLRHKSSILLRWKEWFQELLNAKSPTLDASILDGIEHLPEHAPLAAEPTL
EEVKEAVGKLGNGKAVGFDNVCGELLKLG
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mRNA from alignment at H-elongata_contig169251:1110..1346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169251.4302.1 ID=mRNA_H-elongata_contig169251.4302.1|Name=mRNA_H-elongata_contig169251.4302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig169251:1110..1346+ (Himanthalia elongata Himel1 dioecious)
TTGTTGCGGCACAAGTCGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCA GGAGCTCCTGAACGCGAAATCGCCGACTCTCGACGCCTCTATCCTCGACG GCATTGAGCACTTGCCCGAACACGCCCCGCTTGCGGCCGAGCCCACGTTG GAGGAAGTGAAGGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGCTGTCGG CTTTGACAATGTCTGCGGTGAACTGCTGAAGCTCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig169251:1110..1346+

>mRNA_H-elongata_contig169251.4302.1 ID=mRNA_H-elongata_contig169251.4302.1|Name=mRNA_H-elongata_contig169251.4302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig169251:1110..1346+ (Himanthalia elongata Himel1 dioecious)
TTGTTGCGGCACAAGTCGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCA
GGAGCTCCTGAACGCGAAATCGCCGACTCTCGACGCCTCTATCCTCGACG
GCATTGAGCACTTGCCCGAACACGCCCCGCTTGCGGCCGAGCCCACGTTG
GAGGAAGTGAAGGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGCTGTCGG
CTTTGACAATGTCTGCGGTGAACTGCTGAAGCTCGGTTTGTTGCGGCACA
AGTCGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGCTCCTGAAC
GCGAAATCGCCGACTCTCGACGCCTCTATCCTCGACGGCATTGAGCACTT
GCCCGAACACGCCCCGCTTGCGGCCGAGCCCACGTTGGAGGAAGTGAAGG
AGGCAGTGGGCAAGCTGGGGAACGGCAAGGCTGTCGGCTTTGACAATGTC
TGCGGTGAACTGCTGAAGCTCGGT
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