mRNA_H-elongata_contig169216.4301.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169216.4301.1
Unique NamemRNA_H-elongata_contig169216.4301.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: D8LU45_ECTSI (Similar to calpain 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU45_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.050e-12
Identity = 30/39 (76.92%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKV 117
            +V+VDDLLPTG++GRLLC+AS D++ELWVSI+EKAYLKV
Sbjct:  402 KVVVDDLLPTGDSGRLLCAASADKSELWVSIVEKAYLKV 440
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BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: D8LU43_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU43_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.440e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKV 117
            +V+VDDLLPTG  GRLLCSAS D++ELWVSIIEKAYLKV
Sbjct:  392 KVVVDDLLPTGGKGRLLCSASADKSELWVSIIEKAYLKV 430
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BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: A0A6V7VLK3_9BILA (Hypothetical protein n=3 Tax=Meloidogyne TaxID=189290 RepID=A0A6V7VLK3_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-10
Identity = 27/40 (67.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL 120
            ++I+DDLLP G+NG LLCS S +R+ELWVS++EKAYLKV+
Sbjct:  366 KIIIDDLLPIGKNGELLCSYSQNRSELWVSLLEKAYLKVM 405
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BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: A0A6V7VQI3_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7VQI3_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-10
Identity = 27/40 (67.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL 120
            ++I+DDLLP G+NG LLCS S +R+ELWVS++EKAYLKV+
Sbjct:  368 KIIIDDLLPIGKNGELLCSYSQNRSELWVSLLEKAYLKVM 407
[Close]
BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: A0A6Q2ZLX6_ESOLU (Calpain 7 n=4 Tax=Protacanthopterygii TaxID=41705 RepID=A0A6Q2ZLX6_ESOLU)

HSP 1 Score: 63.2 bits (152), Expect = 1.550e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL 120
            +VI+DD LP G+NG LLCS S++R ELWVS+IEKAY+KV+
Sbjct:  355 KVIIDDFLPCGQNGELLCSYSSNRNELWVSLIEKAYMKVM 394
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BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: A0A6F9BE93_9TELE (Calpain catalytic domain-containing protein (Fragment) n=51 Tax=Salmonidae TaxID=8015 RepID=A0A6F9BE93_9TELE)

HSP 1 Score: 63.2 bits (152), Expect = 1.560e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL 120
            +VI+DD LP G+NG LLCS S++R ELWVS+IEKAY+KV+
Sbjct:  353 KVIIDDFLPCGQNGELLCSYSSNRNELWVSLIEKAYMKVM 392
[Close]
BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: UPI001E1C85A2 (calpain-7 n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C85A2)

HSP 1 Score: 63.2 bits (152), Expect = 1.560e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL 120
            +VI+DD LP G+NG LLCS S++R ELWVS+IEKAY+KV+
Sbjct:  353 KVIIDDFLPCGQNGELLCSYSSNRNELWVSLIEKAYMKVM 392
[Close]
BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: A0A673X918_SALTR (Calpain-7-like n=4 Tax=Salmoninae TaxID=504568 RepID=A0A673X918_SALTR)

HSP 1 Score: 63.2 bits (152), Expect = 1.560e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL 120
            +VI+DD LP G+NG LLCS S++R ELWVS+IEKAY+KV+
Sbjct:  353 KVIIDDFLPCGQNGELLCSYSSNRNELWVSLIEKAYMKVM 392
[Close]
BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: A0A673X968_SALTR (Calpain-7-like n=2 Tax=Protacanthopterygii TaxID=41705 RepID=A0A673X968_SALTR)

HSP 1 Score: 63.2 bits (152), Expect = 1.560e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL 120
            +VI+DD LP G+NG LLCS S++R ELWVS+IEKAY+KV+
Sbjct:  326 KVIIDDFLPCGQNGELLCSYSSNRNELWVSLIEKAYMKVM 365
[Close]
BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Match: UPI00077B0BEE (calpain-7-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B0BEE)

HSP 1 Score: 62.8 bits (151), Expect = 2.130e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL 120
            +VIVDD LP G+NG LLCS S +R E+WVS+IEKAYLKV+
Sbjct:  336 KVIVDDTLPVGKNGELLCSYSNNRNEMWVSLIEKAYLKVM 375
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169216.4301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU45_ECTSI1.050e-1276.92Similar to calpain 7 n=1 Tax=Ectocarpus siliculosu... [more]
D8LU43_ECTSI1.440e-1282.05Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6V7VLK3_9BILA1.140e-1067.50Hypothetical protein n=3 Tax=Meloidogyne TaxID=189... [more]
A0A6V7VQI3_9BILA1.140e-1067.50Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
A0A6Q2ZLX6_ESOLU1.550e-1067.50Calpain 7 n=4 Tax=Protacanthopterygii TaxID=41705 ... [more]
A0A6F9BE93_9TELE1.560e-1067.50Calpain catalytic domain-containing protein (Fragm... [more]
UPI001E1C85A21.560e-1067.50calpain-7 n=1 Tax=Coregonus clupeaformis TaxID=598... [more]
A0A673X918_SALTR1.560e-1067.50Calpain-7-like n=4 Tax=Salmoninae TaxID=504568 Rep... [more]
A0A673X968_SALTR1.560e-1067.50Calpain-7-like n=2 Tax=Protacanthopterygii TaxID=4... [more]
UPI00077B0BEE2.130e-1070.00calpain-7-like n=1 Tax=Acropora digitifera TaxID=7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169216contigH-elongata_contig169216:749..868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog2880.D8LU45
Preferred nameCAPN7
KEGG koko:K08576
GOsGO:0000815,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0006082,GO:0006508,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009058,GO:0009268,GO:0009308,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010008,GO:0010565,GO:0010632,GO:0010634,GO:0012505,GO:0016020,GO:0016053,GO:0016787,GO:0016999,GO:0017000,GO:0017144,GO:0018130,GO:0019222,GO:0019538,GO:0019748,GO:0019752,GO:0019904,GO:0030334,GO:0030335,GO:0030653,GO:0030654,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031982,GO:0032787,GO:0032879,GO:0032991,GO:0033238,GO:0033240,GO:0033244,GO:0033246,GO:0034248,GO:0034250,GO:0034641,GO:0036452,GO:0040012,GO:0040017,GO:0042316,GO:0042318,GO:0042762,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043455,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051176,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051716,GO:0062012,GO:0062013,GO:0065007,GO:0070011,GO:0071214,GO:0071467,GO:0071704,GO:0072330,GO:0072338,GO:0072339,GO:0090541,GO:0097264,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0104004,GO:0140096,GO:1900196,GO:1900198,GO:1900376,GO:1900378,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:2000145,GO:2000147
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.0403664-CDS-H-elongata_contig169216:748..8681622929988.0403664-CDS-H-elongata_contig169216:748..868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169216 749..868 -
1691679236.1688948-CDS-H-elongata_contig169216:748..8681691679236.1688948-CDS-H-elongata_contig169216:748..868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169216 749..868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169216.4301.1prot_H-elongata_contig169216.4301.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169216 749..868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169216.4301.1

>prot_H-elongata_contig169216.4301.1 ID=prot_H-elongata_contig169216.4301.1|Name=mRNA_H-elongata_contig169216.4301.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
QVIVDDLLPTGENGRLLCSASTDRTELWVSIIEKAYLKVL
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mRNA from alignment at H-elongata_contig169216:749..868-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169216.4301.1 ID=mRNA_H-elongata_contig169216.4301.1|Name=mRNA_H-elongata_contig169216.4301.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig169216:749..868- (Himanthalia elongata Himel1 dioecious)
CAGGTGATTGTGGATGATCTCCTCCCGACGGGAGAAAACGGACGGCTTTT
GTGCTCGGCGTCAACGGACAGGACGGAGCTCTGGGTCAGCATCATCGAGA
AGGCTTACCTCAAGGTTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig169216:749..868-

>mRNA_H-elongata_contig169216.4301.1 ID=mRNA_H-elongata_contig169216.4301.1|Name=mRNA_H-elongata_contig169216.4301.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig169216:749..868- (Himanthalia elongata Himel1 dioecious)
CAGGTGATTGTGGATGATCTCCTCCCGACGGGAGAAAACGGACGGCTTTT
GTGCTCGGCGTCAACGGACAGGACGGAGCTCTGGGTCAGCATCATCGAGA
AGGCTTACCTCAAGGTTCTCCAGGTGATTGTGGATGATCTCCTCCCGACG
GGAGAAAACGGACGGCTTTTGTGCTCGGCGTCAACGGACAGGACGGAGCT
CTGGGTCAGCATCATCGAGAAGGCTTACCTCAAGGTTCTC
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