mRNA_H-elongata_contig1692.4299.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1692.4299.1
Unique NamemRNA_H-elongata_contig1692.4299.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: D8LPQ2_ECTSI (ARFRP1, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPQ2_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 4.440e-127
Identity = 181/194 (93.30%), Postives = 188/194 (96.91%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDMHKITKVAFRLQSCSGLTCEGISEGILWIVNEAKKRTRPRVDA 582
             FSLIAGL RYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKV GIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEAR+AF+TVKEQGELHGVPL+MLANKQDLPEAISTADISVQFDMHKITKVAFRLQ CSGLTC+G++EGI WIV+EAKKR RPRVDA
Sbjct:    1 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRARPRVDA 194          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: A0A835YY21_9STRA (ARFRP1, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY21_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.940e-88
Identity = 128/189 (67.72%), Postives = 159/189 (84.13%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDMHKITKVAFRLQSCSGLTCEGISEGILWIVNEAKKRTR 567
             FSL+AGL+RYL SKT++NVLILGLD AGKTTLLEQMKGIFKKVPGIPP+KIPPT+GLNV KMD+GG  +TFWD+GGQVR+R+LWE+YYADAH LI VMDSAD  RFEEA+LAF  V+EQ ELH +PLL+LANKQD+  A S  DI+ QFD HK+  V FR+ + S L+ EG++EGI W++ +A+++T+
Sbjct:    1 MFSLLAGLWRYLTSKTQVNVLILGLDDAGKTTLLEQMKGIFKKVPGIPPAKIPPTIGLNVAKMDIGGVSVTFWDVGGQVRLRALWERYYADAHALICVMDSADAARFEEAQLAFHAVREQAELHALPLLLLANKQDVAGACSGGDIAAQFDAHKVMGVPFRVHAVSALSGEGVNEGISWLIAKAREKTQ 189          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: A0A7S2BA16_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BA16_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.310e-82
Identity = 117/189 (61.90%), Postives = 153/189 (80.95%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDMHKITKVAFRLQSCSGLTCEGISEGILWIVNEAKKRTR 567
             FSLI+G ++  F+K E+ VLILGLD+AGKTTLLEQMKG+F K  GIPP +IPPT+GLN+GKMDVG C++ FWDLGGQVR+RS+WEKYYA+AHG++FV+DSADVGR EEA+LAF+ V+E  EL G+P+L+LANKQDLP A++  DI++ F++H +     RLQ  S LTCEGI +G+ W+V E++   R
Sbjct:   60 MFSLISGFWKIFFAKVEVQVLILGLDHAGKTTLLEQMKGLFNKQQGIPPERIPPTIGLNIGKMDVGTCRVIFWDLGGQVRMRSIWEKYYAEAHGMVFVIDSADVGRMEEAKLAFDAVREHEELRGIPVLLLANKQDLPGAMAIEDIAMHFEIHNLPPRLVRLQPASCLTCEGIEDGVRWVVEESRTADR 248          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: W7TPL1_9STRA (1-family small gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPL1_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.610e-80
Identity = 117/190 (61.58%), Postives = 152/190 (80.00%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDMHKITKV-AFRLQSCSGLTCEGISEGILWIVNEAKKRTR 567
             FSL+AG  +YLFSKTE++VLILGLD+AGKTTLLEQ KGIF+KV GIPP KI PTVGLNVGKMD+ GC +  WDLGGQVR+RS+W+KYYADAHG++FV+D+ADVGRFEEA+LAF ++ +  +L  VP+L+ ANKQDLP A+S  D++  F++ ++ +    ++ SCS LTCEG+  G+ W+V EAK   R
Sbjct:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLAR 190          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: A0A7S2WHH1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WHH1_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.880e-64
Identity = 110/211 (52.13%), Postives = 142/211 (67.30%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPG-IPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQF-----DMHKITKVAF---------------------RLQSCSGLTCEGISEGILWIVNEA 552
             FSL++G F++LFSKTEI +LI+GLD+AGKTTLLEQMKGIF+K    IP  KIPPTVGLN+G+MD+  C++ FWDLGGQ+ +RS+W+KYY++AHGLIFV+DSAD+ RFEEA+ A E++    EL GVPLL+ ANKQDL  +    +I+  F      + KI   A                      +LQ  S LTC GI +GI W+VN A
Sbjct:    1 MFSLLSGFFKWLFSKTEIQILIIGLDHAGKTTLLEQMKGIFQKAANQIPLDKIPPTVGLNIGRMDIDNCRVIFWDLGGQIALRSIWDKYYSEAHGLIFVLDSADIDRFEEAKAAMESIASHPELAGVPLLVCANKQDLATSRGYDEINEYFRVVSESLGKIGSNADSEQNSMNASEHILSLGKRRERKLQPVSALTCSGIEDGIRWLVNAA 211          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: A0A4D9CTS6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTS6_9STRA)

HSP 1 Score: 223 bits (568), Expect = 2.120e-63
Identity = 104/175 (59.43%), Postives = 138/175 (78.86%), Query Frame = 1
Query:   46 TEINVLILGLDYAGKTTLLEQMKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDMHKITKV-AFRLQSCSGLTCEGISEGILWIVNEAKKRTR 567
            ++++VLILGLD+AGKTTLLEQ KGIF+KV GIPP KI PTVGLNVGKMD+ GC +  WDLGGQVR+RS+W+KYYADAHG++FV+D+ADVGRFEEA+LAF ++ +  +L  VP+L+ ANKQDLP A+S  D++  F + ++ +    ++  CS LTCEG+  G+ W+V EAK   R
Sbjct: 1022 SQLHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFKIDRVLRHRVIQVHPCSALTCEGLESGVRWLVQEAKGLAR 1196          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: A0A8J6CF14_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CF14_DIALT)

HSP 1 Score: 203 bits (516), Expect = 1.040e-62
Identity = 100/191 (52.36%), Postives = 138/191 (72.25%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDMHKITKVA--FRLQSCSGLTCEGISEGILWIVNEAKKRTR 567
             FSLIAGLF YLF K E  VLILG+D+AGKTT LEQMKG+F+K+  + P KIPPTVGLN+G+M+VG  KL FWDLGGQ  +R +WEKY+A+ HGL++V+D+AD  RF+E+R  FE + +  +L GVP+L+LANKQDL  A +  +I  +F    +   +  +R++  S +T  GI++GI W+V+  K  +R
Sbjct:    1 MFSLIAGLFEYLFKKAEFQVLILGVDHAGKTTALEQMKGLFQKIEPLAPEKIPPTVGLNIGRMEVGRVKLIFWDLGGQSGLRGIWEKYFAEVHGLVYVIDAADDQRFDESRRIFEALVKHPDLAGVPVLILANKQDLHSAATIDEIDERFGFGSLCAPSQQYRIEPVSAITGSGIADGITWMVDMLKLSSR 191          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: A0A484KDI7_9ASTE (Uncharacterized protein n=5 Tax=Convolvulaceae TaxID=4118 RepID=A0A484KDI7_9ASTE)

HSP 1 Score: 197 bits (500), Expect = 3.240e-60
Identity = 100/199 (50.25%), Postives = 139/199 (69.85%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDMHKITKVAFRLQSCSGLTCEGISEGILWIVN--EAKKRT---RPRVDA 582
             FSL  GL++Y+FSKTE +VLILG+D AGKTTLLE++K  F  + G+PP +I PTVGLN+G+++V   KL FWDLGGQ  +RS+WEKYY +AH ++FV+D+A   RFE+A+ A E V    +LHG PLL+LANKQDL EA S  ++    D+ K+ +  +++Q+ S     GI E + W+V+  E  KRT   + RVD+
Sbjct:    1 MFSLFYGLWKYVFSKTEFHVLILGIDKAGKTTLLEKLKSQFLNIEGLPPDRIVPTVGLNIGRVEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVLFVVDAACPSRFEDAKSALEKVLRHEDLHGAPLLILANKQDLAEAASAEELDRYLDLKKLGERVYKIQAVSAYEGIGIKESVNWLVDAMERSKRTEMLKLRVDS 199          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: A0A2R5GXN1_9STRA (ADP-ribosylation factor-related protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXN1_9STRA)

HSP 1 Score: 197 bits (502), Expect = 6.380e-60
Identity = 95/153 (62.09%), Postives = 121/153 (79.08%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPG-IPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDM 456
             FSL++G F++LFSKTE+ +LI+GLD+AGKTTLLEQMKGIF K    IP  KIPPTVGLN+G+MD+  C++ FWDLGGQ+ +RS+W+KYY++AHGLIFV+DSAD  RFEEA+ A E++ +  EL GVPLL+ ANKQDLP A    DI   F +
Sbjct:    1 MFSLLSGFFKWLFSKTEVQILIIGLDHAGKTTLLEQMKGIFHKSANQIPLDKIPPTVGLNIGRMDINNCRVIFWDLGGQIALRSIWDKYYSEAHGLIFVLDSADTDRFEEAKAAMESLVDHPELTGVPLLVCANKQDLPTAKEFEDIDAYFQI 153          
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Match: T0QBI1_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QBI1_SAPDV)

HSP 1 Score: 195 bits (495), Expect = 1.630e-59
Identity = 93/190 (48.95%), Postives = 132/190 (69.47%), Query Frame = 1
Query:    1 QFSLIAGLFRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQDLPEAISTADISVQFDMHKI-TKVAFRLQSCSGLTCEGISEGILWIVNEAKKRTR 567
             FSL+ G + YLFSK E+++LI+GLDYAGKTTLLEQ+KG F K PGIP  KIPPTVGLN+ K+D+    + FWDLGGQ R+R++W KYY+++HG++FV+D+AD  RF+EAR A +T+    EL G+P+L+LANK DL +A     I+    +  + +    R QS S L+ +G+ + + W++   K   R
Sbjct:    1 MFSLLLGFWNYLFSKAEVHILIIGLDYAGKTTLLEQLKGRFGKKPGIPLDKIPPTVGLNIAKVDISRTNVIFWDLGGQERLRAIWSKYYSESHGIVFVLDAADEARFDEARSALDTMLANAELDGIPILLLANKNDLADAQDMGVIAECLGVASLPSHHEARAQSISALSMDGVEDAVHWLIGAVKNSDR 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1692.4299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPQ2_ECTSI4.440e-12793.30ARFRP1, ARF-like Ras superfamily GTPase n=2 Tax=Ec... [more]
A0A835YY21_9STRA1.940e-8867.72ARFRP1, ARF-like ras superfamily GTPase n=1 Tax=Tr... [more]
A0A7S2BA16_9STRA1.310e-8261.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7TPL1_9STRA1.610e-8061.581-family small gtpase n=1 Tax=Nannochloropsis gadi... [more]
A0A7S2WHH1_9STRA3.880e-6452.13Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A4D9CTS6_9STRA2.120e-6359.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8J6CF14_DIALT1.040e-6252.36Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A484KDI7_9ASTE3.240e-6050.25Uncharacterized protein n=5 Tax=Convolvulaceae Tax... [more]
A0A2R5GXN1_9STRA6.380e-6062.09ADP-ribosylation factor-related protein 1 n=1 Tax=... [more]
T0QBI1_SAPDV1.630e-5948.95Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1692contigH-elongata_contig1692:7878..10932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.9
Seed ortholog evalue1.4e-81
Seed eggNOG ortholog2880.D8LPQ2
Preferred nameARFRP1
KEGG koko:K07952
GOsGO:0000139,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006892,GO:0006893,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0023052,GO:0031090,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034613,GO:0034976,GO:0042147,GO:0042175,GO:0042886,GO:0043001,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048598,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061951,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072657,GO:0072659,GO:0090150,GO:0098588,GO:0098791,GO:0098876,GO:1990778
EggNOG free text desc.Golgi to plasma membrane protein transport
EggNOG OGsKOG0076@1,KOG0076@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionARFRP1, ARF-like Ras superfamily GTPase
Ec32 orthologEc-18_002040.1
Exons6
Model size695
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1692.4299.1prot_H-elongata_contig1692.4299.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1692 8430..10822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.7507806-UTR-H-elongata_contig1692:7877..79701622929987.7507806-UTR-H-elongata_contig1692:7877..7970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1692 7878..7970 +
1691679235.9640584-UTR-H-elongata_contig1692:7877..79701691679235.9640584-UTR-H-elongata_contig1692:7877..7970Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1692 7878..7970 +
1622929987.7674265-UTR-H-elongata_contig1692:8414..84291622929987.7674265-UTR-H-elongata_contig1692:8414..8429Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1692 8415..8429 +
1691679235.9760141-UTR-H-elongata_contig1692:8414..84291691679235.9760141-UTR-H-elongata_contig1692:8414..8429Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1692 8415..8429 +
1622929987.8403676-UTR-H-elongata_contig1692:10822..109321622929987.8403676-UTR-H-elongata_contig1692:10822..10932Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1692 10823..10932 +
1691679236.061397-UTR-H-elongata_contig1692:10822..109321691679236.061397-UTR-H-elongata_contig1692:10822..10932Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1692 10823..10932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.7783852-CDS-H-elongata_contig1692:8429..84991622929987.7783852-CDS-H-elongata_contig1692:8429..8499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 8430..8499 +
1691679235.985407-CDS-H-elongata_contig1692:8429..84991691679235.985407-CDS-H-elongata_contig1692:8429..8499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 8430..8499 +
1622929987.7888513-CDS-H-elongata_contig1692:9004..90601622929987.7888513-CDS-H-elongata_contig1692:9004..9060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 9005..9060 +
1691679235.995032-CDS-H-elongata_contig1692:9004..90601691679235.995032-CDS-H-elongata_contig1692:9004..9060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 9005..9060 +
1622929987.803162-CDS-H-elongata_contig1692:9852..99611622929987.803162-CDS-H-elongata_contig1692:9852..9961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 9853..9961 +
1691679236.0071316-CDS-H-elongata_contig1692:9852..99611691679236.0071316-CDS-H-elongata_contig1692:9852..9961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 9853..9961 +
1622929987.814949-CDS-H-elongata_contig1692:10258..104241622929987.814949-CDS-H-elongata_contig1692:10258..10424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 10259..10424 +
1691679236.0224113-CDS-H-elongata_contig1692:10258..104241691679236.0224113-CDS-H-elongata_contig1692:10258..10424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 10259..10424 +
1622929987.8287477-CDS-H-elongata_contig1692:10746..108221622929987.8287477-CDS-H-elongata_contig1692:10746..10822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 10747..10822 +
1691679236.0392973-CDS-H-elongata_contig1692:10746..108221691679236.0392973-CDS-H-elongata_contig1692:10746..10822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1692 10747..10822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1692.4299.1

>prot_H-elongata_contig1692.4299.1 ID=prot_H-elongata_contig1692.4299.1|Name=mRNA_H-elongata_contig1692.4299.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MKGIFKKVPGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWE
KYYADAHGLIFVMDSADVGRFEEARLAFETVKEQGELHGVPLLMLANKQD
LPEAISTADISVQFDMHKITKVAFRLQSCSGLTCEGISEGILWIVNEAKK
RTRPRVDA*
back to top

mRNA from alignment at H-elongata_contig1692:7878..10932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1692.4299.1 ID=mRNA_H-elongata_contig1692.4299.1|Name=mRNA_H-elongata_contig1692.4299.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3055bp|location=Sequence derived from alignment at H-elongata_contig1692:7878..10932+ (Himanthalia elongata Himel1 dioecious)
CAGTTTTCACTCATCGCCGGCTTGTTCCGGTATCTCTTCTCCAAGACGGA GATTAATGTGCTCATTCTCGGACTGGATTACGCGGGGAAGACGGTATGCC GCCCTAAATTTCAATGTTGATGTGTTTCAATGAGCTCAAAGTTCCTTAGT TAGGGAGTCGATGGGATGTTTTTTATCAGTAGCTGTCGTCAACAGACTAC ATCCCCGTCGAATCGTGACGCGTCCTTTCGGCACAGCGTGTTAAAAAATA TATCCGCCTGTTTATACAACATCATACTTTCTGACCAAAATGAATGACTG TGGCTTCTGACCTATATATTTATTAGCCAGTAGCTAACACCCGGGCAGAG GAAGCACCGTCGCGGCGACACGGGGAGGCATAGCTCTATACCGTAGATAA ATGTTCTGTAGCACTAATAGTGATCTTCGATGTCATGAACGCCTAGATGT ATTACATGGATTGAAACAAAGGGCTCGGCCTTCTCTGAAAATGAGGTGAC CGTCAGTGAAAAACATATCCCCAACCGCCACTGGCAGACCCTGCTGGAGC AAATGAAGGGGATATTCAAAAAGGTGCCAGGGATACCACCGTCCAAGATT CCGCCAACGGTGGGGTTGAATGGTGAGGAGGGGCAAAATAGTATTTTAAA ATACGCCGATGAAGCTGTGTTACGGACGGGAGGGTATACGTTAAAAGGTC CGGTACGCCAAGAGGTGTCCCCTTTACTGCTTCTATGGGGGCTGACATTT GTTGACAACTATTTGTTGACAACTCTGAACGCGATGCTGTCTTTCAAATT TATGTGCCTTCTCTGCACCGCGCCGATTGTTGTGGATATTTGGAGGACCC TGCTGTACTACGCTCTACTGTGACACTTTGTATCCACGAACTTCTAGTTT ACTGTATTGGGCGCATCCTGTCTTAGGAAAACTCTCCATCCGCGCGGAAC TACTGTACGCAAACAATTTCATGACAAAGCGCTATTACTTAAATGTATTT TGCGCATGTAACCCAGGACGGTATTAACACAACTCCAAACTCGTACGAGT AGAGTACCCACTTGTTCTTCGTTCGTTTTTCCGTGGGGTATGGTGATTTT CCTCATTCCGATCCTGGGACATGAAAGTGGGCAAAATGGACGTTGGGGGC TGCAAGCTTACTTTCTGGGATCTGGGAGGGCAGGTGAAGAAACCAGGATT GTTCCACACGCTCCGATGGAATGGCATTGCCATCATATTTCGGCCATTTT TTGTTCGGAAGTCCATTTTCCGTATAATCTTAGAGCCCATATTAACGGGG TTACAAAAACTTTAAATTTCAGCCGATTTATATTTAAATCGGGCTCTGAT TGGACGAAGGATAGGCGTTATTTAGCTTTCGACCAATCAGAGCCCAATTT TAATTTAAATCGGCTGGAAATCTCAATTTCTCCTTTTCCGTTAACATGGG CTCTTACACCCTGTACAATACGCATTTATACGGTACTGTCATAGGTTCTC TCGTTATCTAGGGTTTAAATACCGTTTTCCAATACCCTAGTATGCCCAGG TACTGAACCCGGAATGTCTAGCCCTAGCCGAATGTACTGGCCATAATATA TTGATTGGGGCTGTAGTTGGACATCTATCTGCACAGAAGTTGGATCCCGT CAAAATAACTGAATAAGCAGCAAGTGTGTTGCAAAACCAATAGCCGACAG CTGCAGCCAAAGCAAATGAGAGACGAAAACAAATGCCTCGTTGAGTCCTT GACTAATGCCTCGTTGAGTCCTTGACTAGTGCCGCATTGAGTGCTTGTAC GCGCGAGTTTTTTGTTGGTGTGTGAAGCAATCTCACATTTGTCACCGTGG TTATTCATTACACTCTGCTCTATGCGATGACGACACAGTACGTGATATTG TGTCGGGCTAATGCCGTCGTTACCCTCCACCCATTCTCGGACTTAACTTG TTGCATGAAACACGTCCGATGCAAGGTTCGCGTAAGATCACTTTGGGAAA AATACTACGCCGATGCCCATGGGTTGATTTTCGTCATGGATTCTGCGGAC GTAGGGAGGTTCGAGGAGGCTCGACTGGCTTTTGGTGAGTGCTTGATGCA GTGCTTTGTGAGCCTTTTTAGCGATCGATGGAGCTGCTTTTACCCACGGT TGCGTTGCCATCCACGCGTCTGTCTCCATATTCCTCGTTCTGTTTTATCA AATGTACTGATTCATGCCAAACTTACTTTAGCATCACTCAGGGAGAAGAG GCCCACGCCTTCCTTACCCTTCCCTCCCCTCCCCTCCCGAACGAAAATGT GTCACTTTATCACTTTATTCCTTCATGCTGTTCGAGCGATCGTCTTGCTG CACGGTTGCCCTTGTCGCCTGTTCCATTTAGAAACTGTCAAGGAGCAGGG GGAGCTCCATGGGGTACCGTTACTGATGCTAGCGAACAAGCAGGATCTGC CCGAAGCCATTTCTACTGCCGACATATCGGTGCAATTTGATATGCACAAG ATAACTAAAGTGGCGTTTCGATTACAATCCTGCAGCGGTCTCACGTGGTG AGTAACATCATCCATGATTTTGAAGCCATGCAGTGATTTGCTTGGTTTAG CTCACATATAAACCCGTGCTGGGCAGTAGCCTAACCTTCACTAATTGTTT GAGGTTATCGGTATATCTATCGATGCTTTATGTATGCCGACCTGTTTAAT CAGGTGACAAAACTAAACGATATCATAAAACGAAAGAGTAATTAAATGGT AGTTGACGACCCGCGCTAACGTGCGATCTGCAAATGACCTTCCCTGTTCT CTTCCACCAACCCTCCTTGCATTTTTTTGCACTTAAACTCTTCCTGATGA CTTCTTCGGTTCTCAACAGCGAAGGGATATCGGAGGGGATACTTTGGATA GTTAACGAGGCAAAAAAGAGGACACGACCAAGAGTAGATGCGTAGTGGTC TCTTGATCGAGGACCGTTGGAGTGCTGTGATGAATGTAAAAAGCGTAATT TGTACTTGTAGGTGGACTTTTAAAACCTTGGATGTGTCAATCTGCGAAAG AAATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1692:7878..10932+

>mRNA_H-elongata_contig1692.4299.1 ID=mRNA_H-elongata_contig1692.4299.1|Name=mRNA_H-elongata_contig1692.4299.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig1692:7878..10932+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGGGATATTCAAAAAGGTGCCAGGGATACCACCGTCCAAGATTCC
GCCAACGGTGGGGTTGAATGATGAAGGGGATATTCAAAAAGGTGCCAGGG
ATACCACCGTCCAAGATTCCGCCAACGGTGGGGTTGAATGTGGGCAAAAT
GGACGTTGGGGGCTGCAAGCTTACTTTCTGGGATCTGGGAGGGCAGTGGG
CAAAATGGACGTTGGGGGCTGCAAGCTTACTTTCTGGGATCTGGGAGGGC
AGGTTCGCGTAAGATCACTTTGGGAAAAATACTACGCCGATGCCCATGGG
TTGATTTTCGTCATGGATTCTGCGGACGTAGGGAGGTTCGAGGAGGCTCG
ACTGGCTTTTGGTTCGCGTAAGATCACTTTGGGAAAAATACTACGCCGAT
GCCCATGGGTTGATTTTCGTCATGGATTCTGCGGACGTAGGGAGGTTCGA
GGAGGCTCGACTGGCTTTTGAAACTGTCAAGGAGCAGGGGGAGCTCCATG
GGGTACCGTTACTGATGCTAGCGAACAAGCAGGATCTGCCCGAAGCCATT
TCTACTGCCGACATATCGGTGCAATTTGATATGCACAAGATAACTAAAGT
GGCGTTTCGATTACAATCCTGCAGCGGTCTCACGTGAAACTGTCAAGGAG
CAGGGGGAGCTCCATGGGGTACCGTTACTGATGCTAGCGAACAAGCAGGA
TCTGCCCGAAGCCATTTCTACTGCCGACATATCGGTGCAATTTGATATGC
ACAAGATAACTAAAGTGGCGTTTCGATTACAATCCTGCAGCGGTCTCACG
TGCGAAGGGATATCGGAGGGGATACTTTGGATAGTTAACGAGGCAAAAAA
GAGGACACGACCAAGAGTAGATGCGTAGCGAAGGGATATCGGAGGGGATA
CTTTGGATAGTTAACGAGGCAAAAAAGAGGACACGACCAAGAGTAGATGC
GTAG
back to top