mRNA_H-elongata_contig16913.4297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16913.4297.1
Unique NamemRNA_H-elongata_contig16913.4297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: A0A6H5KRX1_9PHAE (Homeobox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX1_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 5.430e-41
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:   31 SALSNRKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVRRCRTKRIGVATGPEQITY 273
            S  +NRKGSRHRLTP AKEILEGWLAKHWLNPYPTE +KL+L+Q C ITVTQVNNWMMNVRVRRCRTK+IG+ATGPE+ITY
Sbjct:  461 SVYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITY 541
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: D7FSL4_ECTSI (Transcription factor protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL4_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 9.490e-41
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:   40 SNRKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVRRCRTKRIGVATGPEQITY 273
            +NRKGSRHRLTP AKEILEGWLA HWLNPYPTE +KL+L+Q C ITVTQVNNWMMNVRVRRCRTK+IG+ATGPE+ITY
Sbjct:  309 NNRKGSRHRLTPQAKEILEGWLANHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITY 386
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: D2V5D6_NAEGR (Homeobox protein PKNOX1-like protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V5D6_NAEGR)

HSP 1 Score: 60.5 bits (145), Expect = 1.170e-8
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   46 RKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVRRCR 228
            R   R  L   A  +L+ WL  H+L+PYPTE+EK  L     +T+TQVNNW +N RVR  R
Sbjct:  581 RSKRRGNLPRHATNVLKSWLYSHFLHPYPTESEKKDLCMETGLTLTQVNNWFINQRVRTWR 641
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: UPI0010FB3FD3 (iroquois-class homeodomain protein irx-4-B-like isoform X1 n=3 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB3FD3)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-8
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   40 SNRKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVR 219
            S+R+  R  L   A  IL+ WL +H  N YP+E+EKLHLS++ ++++ QV NW +N R R
Sbjct:   81 SSRRKRRGNLPKEAVNILKRWLMEHRYNAYPSESEKLHLSELTRLSILQVCNWFINARRR 140
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: UPI00188519D9 (homeobox protein PKNOX2-like n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI00188519D9)

HSP 1 Score: 59.7 bits (143), Expect = 1.960e-8
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   46 RKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVR 219
            RK  R  L   + ++L+ WL +H  +PYP+EAEK HLS   ++++ QVNNW +N R R
Sbjct:  242 RKQKRGVLPKHSTDVLKSWLFQHMAHPYPSEAEKHHLSAATRLSLVQVNNWFINARRR 299
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: UPI001CFCA5A7 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCA5A7)

HSP 1 Score: 58.9 bits (141), Expect = 4.100e-8
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   46 RKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVRRCR 228
            R   R  L   A  +L+ WL  H+L+PYP+E+EK  L     +T+TQVNNW +N RVR  R
Sbjct:  682 RSKRRGNLPRHATNVLKSWLFSHFLHPYPSESEKKDLCMETGLTLTQVNNWFINQRVRTWR 742
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: A0A6A5BJI4_NAEFO (Homeobox domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BJI4_NAEFO)

HSP 1 Score: 58.9 bits (141), Expect = 4.110e-8
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   46 RKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVRRCR 228
            R   R  L   A  +L+ WL  H+L+PYP+E+EK  L     +T+TQVNNW +N RVR  R
Sbjct:  705 RSKRRGNLPRHATNVLKSWLFSHFLHPYPSESEKKDLCMETGLTLTQVNNWFINQRVRTWR 765
[Close]
BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: UPI001879BEB4 (LOW QUALITY PROTEIN: homeobox protein TGIF2LY n=1 Tax=Manis javanica TaxID=9974 RepID=UPI001879BEB4)

HSP 1 Score: 57.0 bits (136), Expect = 4.840e-8
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   31 SALSNRKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVR 219
            ++L N+K  +      + +IL  WL  H L PYP+EAEKL LS+   ++  QV+NW +N R R
Sbjct:   33 ASLDNKKKQKRYFPTESVKILRDWLCDHQLKPYPSEAEKLMLSEQTNLSFLQVSNWFVNARRR 95
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: A0A182SNY3_9DIPT (Homeobox domain-containing protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182SNY3_9DIPT)

HSP 1 Score: 57.8 bits (138), Expect = 5.190e-8
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   40 SNRKGSRHRLTPMAKE---ILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVR 219
            SN+  SR R   + K+   IL+ WL +H  N YPT+AEKL LSQ   +TV QV NW +N R R
Sbjct:   19 SNQSSSRKRRGNLPKQSVKILKRWLYEHRFNAYPTDAEKLTLSQEANLTVLQVCNWFINARRR 81
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BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Match: A0A0S7IZ12_9TELE (TGIF2 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IZ12_9TELE)

HSP 1 Score: 56.2 bits (134), Expect = 5.950e-8
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   13 PLIRSGSALSNRKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKLHLSQICKITVTQVNNWMMNVRVR 219
            PL  SG  +  ++  R  L   + +IL  WL +H  N YP+E EKL LS   K++V Q+ NW +N R R
Sbjct:   32 PLDLSGRGVLGKRRRRGNLPKESVQILRSWLYEHRFNAYPSEQEKLSLSNQTKLSVLQICNWFINARRR 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16913.4297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRX1_9PHAE5.430e-4183.95Homeobox domain-containing protein n=1 Tax=Ectocar... [more]
D7FSL4_ECTSI9.490e-4184.62Transcription factor protein n=1 Tax=Ectocarpus si... [more]
D2V5D6_NAEGR1.170e-847.54Homeobox protein PKNOX1-like protein n=1 Tax=Naegl... [more]
UPI0010FB3FD31.460e-845.00iroquois-class homeodomain protein irx-4-B-like is... [more]
UPI00188519D91.960e-844.83homeobox protein PKNOX2-like n=2 Tax=Pollicipes po... [more]
UPI001CFCA5A74.100e-845.90uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BJI4_NAEFO4.110e-845.90Homeobox domain-containing protein n=1 Tax=Naegler... [more]
UPI001879BEB44.840e-841.27LOW QUALITY PROTEIN: homeobox protein TGIF2LY n=1 ... [more]
A0A182SNY3_9DIPT5.190e-849.21Homeobox domain-containing protein n=1 Tax=Anophel... [more]
A0A0S7IZ12_9TELE5.950e-840.58TGIF2 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16913contigH-elongata_contig16913:5627..6623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1e-33
Seed eggNOG ortholog2880.D7FSL4
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsKOG0774@1,KOG0774@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.6166894-CDS-H-elongata_contig16913:5626..58121622929987.6166894-CDS-H-elongata_contig16913:5626..5812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16913 5627..5812 +
1691679235.927679-CDS-H-elongata_contig16913:5626..58121691679235.927679-CDS-H-elongata_contig16913:5626..5812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16913 5627..5812 +
1622929987.6311872-CDS-H-elongata_contig16913:6536..66231622929987.6311872-CDS-H-elongata_contig16913:6536..6623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16913 6537..6623 +
1691679235.9368374-CDS-H-elongata_contig16913:6536..66231691679235.9368374-CDS-H-elongata_contig16913:6536..6623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16913 6537..6623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16913.4297.1prot_H-elongata_contig16913.4297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16913 5627..6623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16913.4297.1

>prot_H-elongata_contig16913.4297.1 ID=prot_H-elongata_contig16913.4297.1|Name=mRNA_H-elongata_contig16913.4297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MGPKPLIRSGSALSNRKGSRHRLTPMAKEILEGWLAKHWLNPYPTEAEKL
HLSQICKITVTQVNNWMMNVRVRRCRTKRIGVATGPEQITY
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mRNA from alignment at H-elongata_contig16913:5627..6623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16913.4297.1 ID=mRNA_H-elongata_contig16913.4297.1|Name=mRNA_H-elongata_contig16913.4297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=997bp|location=Sequence derived from alignment at H-elongata_contig16913:5627..6623+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCCGAAGCCATTGATCAGGTCGGGGTCGGCGCTCAGCAATCGAAA
GGGAAGTCGACACCGATTGACCCCAATGGCGAAGGAAATCCTGGAGGGCT
GGCTGGCCAAGCACTGGCTGAACCCGTACCCCACGGAAGCCGAAAAGCTT
CACCTGTCACAGATTTGCAAGATCACGGTCACGCAGGTGAATCATAGTAA
TGTTAGGTCCCACGAAGGACTGAGGGAGTAGCCAGGCTCGGCCCACATAA
AGGCAGGCGTCTGTTCAATATATGTGATCTGTGCAATAGATGCGATATCC
TCGTGCTGGTCAGTGTTGTGACGGTGATGCTTTACATCTAAAATTTGAAG
CTGGCTGAAACTACTTGTTGTTACTTTGTACAGCATCAGGTAGTGGCCCT
CGCGGCTCTTGTTGGGTGAGACGCGATCATCCATCGCACCGTCGGCAACC
AGTATCGCACGTGCCCTATAAAGCGTTCGGGGGGATCAGATAAAAGACGA
GGCTGGCAAAAGCCCTCCCGATCTTCGGCTAACGCCGCTCCTCATGCCCG
TGGCCTCACCGGCCGATGAAAGGCAAGGGCGGTGAAGGTGTGGGTGATCG
AAGGGTTTAAATGAGTTCATATGTTTTAAAATATAAATATTAATTTTAAA
GAAAACGAAAACAAAATATTTTCTCCACCTGTCCAACGTACCATGCCGCC
AAGAACTTAAATGCAAAATGTACCGCAGGATCGAGGCAGCTATCGCTACC
CACCCCCTCCCCCTAAAGAGTGGCGTGTACATTCCTTTGCGCTTCGTGGC
ATGCCAATGTATGTCCCTACTCATTTTCGTAAAAACACAGTCCTCCATTA
TTTTCGAAAAATGTAATTCGTTTTTTTTCCGTTGTATACACTACCATGCA
TAATATATAGGTGAATAACTGGATGATGAACGTTCGAGTAAGGCGATGCA
GGACGAAGAGGATCGGCGTCGCCACTGGACCTGAACAAATCACGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig16913:5627..6623+

>mRNA_H-elongata_contig16913.4297.1 ID=mRNA_H-elongata_contig16913.4297.1|Name=mRNA_H-elongata_contig16913.4297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig16913:5627..6623+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCCGAAGCCATTGATCAGGTCGGGGTCGGCGCTCAGCAATCGAAA
GGGAAGTCGACACCGATTGACCCCAATGGCGAAGGAAATCCTGGAGGGCT
GGCTGGCCAAGCACTGGCTGAACCCGTACCCCACGGAAGCCGAAAAGCTT
CACCTGTCACAGATTTGCAAGATCACGGTCACGCAGATGGGCCCGAAGCC
ATTGATCAGGTCGGGGTCGGCGCTCAGCAATCGAAAGGGAAGTCGACACC
GATTGACCCCAATGGCGAAGGAAATCCTGGAGGGCTGGCTGGCCAAGCAC
TGGCTGAACCCGTACCCCACGGAAGCCGAAAAGCTTCACCTGTCACAGAT
TTGCAAGATCACGGTCACGCAGGTGAATAACTGGATGATGAACGTTCGAG
TAAGGCGATGCAGGACGAAGAGGATCGGCGTCGCCACTGGACCTGAACAA
ATCACGTACGTGAATAACTGGATGATGAACGTTCGAGTAAGGCGATGCAG
GACGAAGAGGATCGGCGTCGCCACTGGACCTGAACAAATCACGTAC
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