mRNA_H-elongata_contig169105.4295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169105.4295.1
Unique NamemRNA_H-elongata_contig169105.4295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: D7FGT3_ECTSI (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGT3_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.190e-74
Identity = 110/126 (87.30%), Postives = 126/126 (100.00%), Query Frame = 1
Query:    1 QNLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPHP 378
            +NLKLLVKVLDKLDPKFDGADR+WVSIYEESAKLLYKEIDY+NEA+NA+RF+ENF++TPWVKVP+VYWN+TSERVVTME+VPGVKINN++EI+RRGIDRK+LA+RSAEAYLTQLCRHGFFHCDPHP
Sbjct:  333 KNLKLLVKVLDKLDPKFDGADRDWVSIYEESAKLLYKEIDYINEAENAIRFKENFQDTPWVKVPDVYWNMTSERVVTMEFVPGVKINNIDEIDRRGIDRKLLAKRSAEAYLTQLCRHGFFHCDPHP 458          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: A0A7S2P799_BIGNA (Hypothetical protein (Fragment) n=2 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2P799_BIGNA)

HSP 1 Score: 211 bits (536), Expect = 4.680e-63
Identity = 94/125 (75.20%), Postives = 111/125 (88.80%), Query Frame = 1
Query:    4 NLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPHP 378
            NL+LL  +LDKLDPK DGA R+WV IYEESA+LLYKEIDY NEA NA RF+ENF + PW+KVP++YW  TS+RV+TMEYVP VKINN+EEIERRGIDRK+LA+RSA++YL QLCR+GFFHCDPHP
Sbjct:  392 NLRLLAVILDKLDPKTDGAQRDWVRIYEESARLLYKEIDYTNEAKNAERFKENFADVPWIKVPDIYWETTSKRVLTMEYVPSVKINNIEEIERRGIDRKLLAKRSADSYLKQLCRYGFFHCDPHP 516          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: A0A7S0XEN1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEN1_9STRA)

HSP 1 Score: 206 bits (524), Expect = 3.040e-61
Identity = 95/126 (75.40%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    1 QNLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPHP 378
            +N+K+L  +LDKLDPK DGA R+WVSIYEESAKLLYKEIDY  EA N++RF+ENF   PWVKVP+VY NLTS RVVTMEYVPG+KIN++ +IE  GIDRK+LA+RSAE+YLTQLCRHGFFHCDPHP
Sbjct:  169 KNIKVLAVILDKLDPKTDGASRDWVSIYEESAKLLYKEIDYKLEALNSIRFKENFANNPWVKVPDVYLNLTSPRVVTMEYVPGIKINDIAKIEAAGIDRKLLAKRSAESYLTQLCRHGFFHCDPHP 294          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: A0A482SBS9_9ARCH (AarF/ABC1/UbiB kinase family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS9_9ARCH)

HSP 1 Score: 199 bits (507), Expect = 6.310e-60
Identity = 86/126 (68.25%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    1 QNLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPHP 378
            +N+K+L K+LDK DPK DGA R+W+SIY+ESAKLLYKEIDY  EA N++RF++NF+  PWVKVP+VY+N+T+  V+ MEYVPG+K+NN+  IE  GIDR++LA+RSAE+YLTQLCRHGFFHCDPHP
Sbjct:  138 KNIKVLAKILDKFDPKTDGAQRDWISIYDESAKLLYKEIDYQLEALNSIRFQDNFKNVPWVKVPDVYFNMTTTNVIVMEYVPGIKVNNIAAIEAAGIDRQLLAKRSAESYLTQLCRHGFFHCDPHP 263          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: A0A7S0H9B0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H9B0_9EUKA)

HSP 1 Score: 200 bits (508), Expect = 2.570e-58
Identity = 88/125 (70.40%), Postives = 108/125 (86.40%), Query Frame = 1
Query:    4 NLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPHP 378
            NL+ +  +LDKLDPK DGA R+WV IYEESA+LLYKEIDY+NE   A RF  NF +TPW+KVP++YW+ +S+RV+TMEYVP VKINN+EEIE+RGIDRK LA+RSA++YL QLCR+GFFHCDPHP
Sbjct:  264 NLRFIAVILDKLDPKTDGAQRDWVRIYEESARLLYKEIDYINEGQQAERFASNFADTPWIKVPKIYWDTSSKRVLTMEYVPSVKINNIEEIEKRGIDRKKLAQRSADSYLKQLCRYGFFHCDPHP 388          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: A0A7S2V580_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V580_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.050e-58
Identity = 86/113 (76.11%), Postives = 99/113 (87.61%), Query Frame = 1
Query:   40 DPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPHP 378
            DPK DGADR+WVSIYEESAKLLYKEIDY NEA NA  F +NF+   WVKVPE+ W L S+RV+TMEYVPGVKIN+++EIERRGI+R +LA RSAE+YLTQLCR+GFFHCDPHP
Sbjct:    1 DPKSDGADRDWVSIYEESAKLLYKEIDYENEAKNAQLFNDNFKSVDWVKVPEIKWGLVSKRVLTMEYVPGVKINDIKEIERRGINRDLLAARSAESYLTQLCRYGFFHCDPHP 113          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: A0A7S4D846_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D846_HETAK)

HSP 1 Score: 197 bits (502), Expect = 4.050e-57
Identity = 89/126 (70.63%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    1 QNLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPHP 378
            +NL+LL ++LD  DPKFDGADR+WVSIY ESAKLLY+EIDY  EA+   +F+E+F +  WVKVP+V W+  S RV+TMEYVPG+KIN+LEEI+RRGIDRK+LARRSAE+YLTQLCR+G+FHCDPHP
Sbjct:  313 RNLELLARLLDLADPKFDGADRDWVSIYRESAKLLYREIDYRIEAEQGQKFKEDFAKVEWVKVPDVEWDKVSSRVITMEYVPGIKINDLEEIDRRGIDRKLLARRSAESYLTQLCRNGYFHCDPHP 438          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: A0A7S2TV21_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TV21_9EUKA)

HSP 1 Score: 194 bits (493), Expect = 6.680e-57
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 1
Query:    4 NLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPHP 378
            NLK L  +LDKLDPK DGA R+WV IYEESA+LLYKEIDY NE  NA RF  NF++  W+KVP++YWN TS RV+TMEYVP  KIN++E+I+ +GID+K+LA+RSA++YL QLC+HGFFHCDPHP
Sbjct:  145 NLKFLAVILDKLDPKTDGASRDWVRIYEESARLLYKEIDYENEGKNAERFANNFKDVSWIKVPKIYWNTTSPRVLTMEYVPSTKINDIEKIQAQGIDQKLLAKRSADSYLAQLCKHGFFHCDPHP 269          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: A0A2V3J5Q8_9FLOR (ABC1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5Q8_9FLOR)

HSP 1 Score: 190 bits (483), Expect = 1.390e-54
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 1
Query:    1 QNLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPH 375
            +NLK+L  +LD+LDPK DG  RNWV IY+ESAKLLY+EIDY+NE  NA RFR+NF   PWVKVP +YW LT+++V+TMEYVPG+KIN+ + IER G+DRK+LA RSAE+YLTQL RHG+FH DPH
Sbjct:  283 KNLKVLAVMLDRLDPKSDGTSRNWVQIYDESAKLLYQEIDYINEGRNADRFRDNFDSVPWVKVPGIYWQLTTQQVLTMEYVPGIKINDYDAIERAGLDRKLLAERSAESYLTQLLRHGYFHTDPH 407          
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Match: R7QM65_CHOCR (ABC1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM65_CHOCR)

HSP 1 Score: 192 bits (487), Expect = 1.850e-54
Identity = 88/125 (70.40%), Postives = 104/125 (83.20%), Query Frame = 1
Query:    1 QNLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVRFRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRKILARRSAEAYLTQLCRHGFFHCDPH 375
            +NLK+L ++LDK DPK DGA RNWV IY+ESAKLLY+EIDY+ E  NA RFR NFR TPWVKVP +YW+LTS RV+TMEYVPG+KIN+ E IE  G+DR  LA+RSAE+YLTQL RHG+FH DPH
Sbjct:  475 KNLKVLARMLDKFDPKSDGASRNWVQIYDESAKLLYEEIDYVMEGKNADRFRNNFRSTPWVKVPGIYWDLTSTRVLTMEYVPGIKINDYEAIENAGLDRSRLAKRSAESYLTQLLRHGYFHTDPH 599          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169105.4295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGT3_ECTSI1.190e-7487.30ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2P799_BIGNA4.680e-6375.20Hypothetical protein (Fragment) n=2 Tax=Bigelowiel... [more]
A0A7S0XEN1_9STRA3.040e-6175.40Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A482SBS9_9ARCH6.310e-6068.25AarF/ABC1/UbiB kinase family protein (Fragment) n=... [more]
A0A7S0H9B0_9EUKA2.570e-5870.40Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S2V580_9STRA5.050e-5876.11Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4D846_HETAK4.050e-5770.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2TV21_9EUKA6.680e-5768.00Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2V3J5Q8_9FLOR1.390e-5468.00ABC1 domain-containing protein n=1 Tax=Gracilariop... [more]
R7QM65_CHOCR1.850e-5470.40ABC1 domain-containing protein n=1 Tax=Chondrus cr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169105contigH-elongata_contig169105:139..1002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.4
Seed ortholog evalue1.7e-63
Seed eggNOG ortholog2880.D7FGT3
KEGG koko:K08869
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169105.4295.1prot_H-elongata_contig169105.4295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169105 139..1002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.4989033-CDS-H-elongata_contig169105:138..2031622929987.4989033-CDS-H-elongata_contig169105:138..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169105 139..203 +
1691679235.8843248-CDS-H-elongata_contig169105:138..2031691679235.8843248-CDS-H-elongata_contig169105:138..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169105 139..203 +
1622929987.51503-CDS-H-elongata_contig169105:389..5101622929987.51503-CDS-H-elongata_contig169105:389..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169105 390..510 +
1691679235.8982644-CDS-H-elongata_contig169105:389..5101691679235.8982644-CDS-H-elongata_contig169105:389..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169105 390..510 +
1622929987.525986-CDS-H-elongata_contig169105:810..10021622929987.525986-CDS-H-elongata_contig169105:810..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169105 811..1002 +
1691679235.9066834-CDS-H-elongata_contig169105:810..10021691679235.9066834-CDS-H-elongata_contig169105:810..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169105 811..1002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169105.4295.1

>prot_H-elongata_contig169105.4295.1 ID=prot_H-elongata_contig169105.4295.1|Name=mRNA_H-elongata_contig169105.4295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
QNLKLLVKVLDKLDPKFDGADRNWVSIYEESAKLLYKEIDYLNEADNAVR
FRENFRETPWVKVPEVYWNLTSERVVTMEYVPGVKINNLEEIERRGIDRK
ILARRSAEAYLTQLCRHGFFHCDPHP
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mRNA from alignment at H-elongata_contig169105:139..1002+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169105.4295.1 ID=mRNA_H-elongata_contig169105.4295.1|Name=mRNA_H-elongata_contig169105.4295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig169105:139..1002+ (Himanthalia elongata Himel1 dioecious)
CAGAACCTGAAGCTGCTGGTGAAGGTGCTGGACAAGCTGGACCCGAAGTT CGACGGAGCTGACAGGTGATGACGCATGACCACGGCGGCCGGTCAGTCAA GCGCTAAGCTCCCAGCACTCTAATGGGAGGCTCCCCGCGCAAGACGGGCG ACAGCTCTGGGCTAATGAAGGTATGTATACCCCTTGAGGGGCTCGCTCGG TCAATCGCTTGATTATCGTCTCCTCTCCCTTGTCTGGATGTTTCGCCACA GGAATTGGGTTTCCATCTACGAAGAGAGCGCGAAGCTTCTGTACAAGGAG ATCGACTACCTGAACGAGGCAGACAACGCCGTCCGCTTCAGGGAAAACTT CCGGGAAACCCCTTGGGTCAAGGTAAATAAAAAAATAAAATTACTTGACT CGTGTATATGACATGCCTCACGCAGTTCTCGTGTAGGGACTTTTTGTGCT TCGTGTCACCGTCCCCCGTTGCACGCCGCGAAGCTCAACGAGGGCCACAA ACATTTTTCAGAGACCGCTATCGTTGCGATTGCCAGGGGCGTGATCGCTG GTTCGATGCTAACGGTGCCGTACAATGTTCTGGCAGTTTGGTAGCATAAG GAGGATCGCCTCGACCTATAAAACGAGACGTTTCTCCGCGGTGGGGGACG TGGGATGGGATGGGATGAGCAGGTTCCCGAAGTGTACTGGAACCTGACGT CGGAGCGCGTGGTGACCATGGAATACGTCCCGGGCGTGAAGATCAATAAT CTGGAGGAGATTGAGCGCCGCGGGATCGATCGCAAGATACTAGCCAGGCG CTCCGCCGAGGCGTACCTCACCCAGCTCTGTCGCCATGGCTTCTTCCATT GCGACCCCCATCCT
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Coding sequence (CDS) from alignment at H-elongata_contig169105:139..1002+

>mRNA_H-elongata_contig169105.4295.1 ID=mRNA_H-elongata_contig169105.4295.1|Name=mRNA_H-elongata_contig169105.4295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig169105:139..1002+ (Himanthalia elongata Himel1 dioecious)
CAGAACCTGAAGCTGCTGGTGAAGGTGCTGGACAAGCTGGACCCGAAGTT
CGACGGAGCTGACAGCAGAACCTGAAGCTGCTGGTGAAGGTGCTGGACAA
GCTGGACCCGAAGTTCGACGGAGCTGACAGGAATTGGGTTTCCATCTACG
AAGAGAGCGCGAAGCTTCTGTACAAGGAGATCGACTACCTGAACGAGGCA
GACAACGCCGTCCGCTTCAGGGAAAACTTCCGGGAAACCCCTTGGGTCAA
GGAATTGGGTTTCCATCTACGAAGAGAGCGCGAAGCTTCTGTACAAGGAG
ATCGACTACCTGAACGAGGCAGACAACGCCGTCCGCTTCAGGGAAAACTT
CCGGGAAACCCCTTGGGTCAAGGTTCCCGAAGTGTACTGGAACCTGACGT
CGGAGCGCGTGGTGACCATGGAATACGTCCCGGGCGTGAAGATCAATAAT
CTGGAGGAGATTGAGCGCCGCGGGATCGATCGCAAGATACTAGCCAGGCG
CTCCGCCGAGGCGTACCTCACCCAGCTCTGTCGCCATGGCTTCTTCCATT
GCGACCCCCATCCTGTTCCCGAAGTGTACTGGAACCTGACGTCGGAGCGC
GTGGTGACCATGGAATACGTCCCGGGCGTGAAGATCAATAATCTGGAGGA
GATTGAGCGCCGCGGGATCGATCGCAAGATACTAGCCAGGCGCTCCGCCG
AGGCGTACCTCACCCAGCTCTGTCGCCATGGCTTCTTCCATTGCGACCCC
CATCCT
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