mRNA_H-elongata_contig169073.4294.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169073.4294.1
Unique NamemRNA_H-elongata_contig169073.4294.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: D7FVP4_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP4_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.880e-60
Identity = 102/203 (50.25%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 QVLYALKFRCGKRLAREDFALTSEALVMAVR--------DSASPARRSGTS----------GRIIEVVKLTLRQPNGSLPTNWPFPAPWR--------PV----NPVKRWETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYDTLVWIRRLLGMPTMRYQVKQLRFQRPA 519
            ++LY+L+ RCG RL R DF  +S+ALV+AVR         S++P  + G +            ++ VV+LT+R+P+GSLP NWPFPAPWR        P+     P ++W+ YMCNLAV + YRG G  +QLVRLCEHVAKN  GY+RMYLH+DL DPAA  LYSSMGYE I +YD  +W+R+L G PT+RYQVK+ + ++ A
Sbjct:  172 EILYSLRSRCGNRLTRGDFDRSSDALVLAVRGPPSTSGKSSSTPVTQDGDADGGVGXXXXAAELVAVVELTIRKPDGSLPLNWPFPAPWRREARDLIVPLLYIEKPPEQWQPYMCNLAVAEEYRGNGYGKQLVRLCEHVAKNSWGYERMYLHVDLGDPAATGLYSSMGYEGIEKYDAPLWMRKLFGWPTIRYQVKRFKGRKGA 374          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: D7FVP3_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP3_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 2.840e-51
Identity = 93/183 (50.82%), Postives = 114/183 (62.30%), Query Frame = 1
Query:    1 QVLYALKFRCGKRLAREDFALTSEALVMAVRDSASPARRSGTS------------------GRIIEVVKLTLRQPNGSLPTNWPFPAPWRPVNPVKRWETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYDTLVWIRRLLGMPTMRYQVK 495
            ++L ++K RCGKRL R DFALTS+ALV+AVRDS        TS                  G I+ VV+L LRQP+G LP N PF        P+  WE YMCNLAV + YRG G  +QLVRLCE VAK H GY+RMYLH+D   PAA  LYSSMGYE + Q+    W+++LLG+  + YQVK
Sbjct:    5 KILRSIKSRCGKRLTRGDFALTSDALVLAVRDSRPNGSARATSAVPELGGDGAGDGGGGDAGDIVAVVELCLRQPDGWLPINGPFV-------PMTGWEPYMCNLAVTEKYRGNGYGKQLVRLCEGVAKKHWGYERMYLHVDAASPAATSLYSSMGYEIMEQFQPPSWVKKLLGLRDILYQVK 180          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: A0A6H5KVK2_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK2_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 9.130e-49
Identity = 93/183 (50.82%), Postives = 113/183 (61.75%), Query Frame = 1
Query:    1 QVLYALKFRCGKRLAREDFALTSEALVMAVRDSASPARRSGTS------------------GRIIEVVKLTLRQPNGSLPTNWPFPAPWRPVNPVKRWETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYDTLVWIRRLLGMPTMRYQVK 495
            Q+L ++K RCGKRL R DFALTS+ALV+AVRDS        TS                  G I+ VV+L LRQP+G  P N PF        P+  WE YMCNLAV + YRG G  +QLVRLCE VAK H GY+RMYLH+D   PAA  LYSSMGYE + Q+    W+++LLG+  + YQVK
Sbjct:  220 QILRSIKSRCGKRLTRGDFALTSDALVLAVRDSRPNGSARATSAVPELGGDGAGDAGGGDAGDIVAVVELCLRQPDGWFPINGPFV-------PMTGWEPYMCNLAVAEKYRGNGYGKQLVRLCEGVAKKHWGYERMYLHVDAASPAATSLYSSMGYEIMEQFQPPSWVKKLLGLRDILYQVK 395          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: A0A7S3EXG7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EXG7_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 5.870e-14
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   16 LKFRCGKRLAREDFALTSEA-LVMAVRDSASPARRSGTSGRIIEVVKLTLRQPNGSLPTNWPFPAPWRPVNPVKRWETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYD 438
            L++R  +RL R   AL+ EA L++A++D         T+G+++  V+++LR  +G LP  +  P P   ++       Y+ NLAV   YR  G+  +L+  CE + +       +YLH+DL + AA+ELY S+GY  +  YD
Sbjct:  120 LQWRLAERLQRPTVALSLEASLLLALQDR--------TTGQLVACVEVSLRPIDGKLPGEFAVP-PLFLIHSDSDLGAYLSNLAVLPGYRRRGIASRLLEACEWLVRVEWSLDYLYLHVDLHNAAAVELYGSVGYVQLPSYD 252          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: A0A448ZI05_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI05_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.210e-13
Identity = 57/180 (31.67%), Postives = 84/180 (46.67%), Query Frame = 1
Query:   34 KRLAREDFALTSEALVMAVRDS-----ASPARRSGTSGRIIEVVKLTLRQPNGSLPTNWPFPAPWRPVNPVKR-------------------WETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYDTLVWIRRLLGMPTMRYQVKQL 501
            K L+RE      E +  A RDS       P+  +  S  +I  ++L L+  +  +P    F  PW  ++ V+R                    + Y+ NL V++ +RG+ + R LVR  E++AKN  GY RMYLH+D D+PAA+ LY S GY  +       W     G   + Y VK L
Sbjct:  172 KGLSRE------EQIRKAERDSLVLILGKPSNDASRSIEVIASIELRLQPCDAKIP----FSIPW--LDRVERRIGSLIGLGNNGNGAGTNDMQPYLSNLCVDEKFRGQKIGRGLVRCVENIAKNSWGYNRMYLHVDEDNPAALNLYKSEGYSDVGHRWNPFWSG---GASEIGYYVKSL 336          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: A0A7S4AXY7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXY7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.450e-10
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  241 ETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYDTLVWIRRLLGMPTMRYQVKQL 501
            + Y+ NL V++ +RG+ + R LVR  E+VAKN  GY R+YLH+D D+ AA+ LY S GY  +       W     G   + Y VK L
Sbjct:  282 QPYLSNLCVDEKFRGQKIGRGLVRCIENVAKNSWGYNRIYLHVDEDNIAALNLYKSEGYRDVGHRWNPFWSG---GASEIGYYVKSL 365          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: A0A1Z5JMB9_FISSO (N-acetyltransferase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMB9_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 2.110e-10
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  136 IIEVVKLTLRQPNGSLPTNWPFPAPWRPVNPVKRW--------ETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYDTLVW 450
            II  V+L L+  +  +P    F  PW      + W        + Y+ NL V ++YRG+ + R LV+  E +A    GY ++YLH+D+D+ AA +LY+S GY+ + Q     W
Sbjct:  190 IIGSVELRLQPCDAKIP----FTLPWLDRIERRLWNKQTAVQQQPYLSNLCVAEAYRGQSIGRALVQCVEDIAGTVWGYSKIYLHVDVDNTAAYQLYTSAGYKDVGQRWNPFW 298          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: A0A1Z5KCF6_FISSO (N-acetyltransferase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCF6_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 2.120e-10
Identity = 50/170 (29.41%), Postives = 79/170 (46.47%), Query Frame = 1
Query:    1 QVLYALKFRCGKRLAREDFAL----------TSEALVMAV-RDSASPARRSGTSGRIIEVVKLTLR-QPNGSLPTNWPFPAPWRPVNPVKRW--------ETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYDTLVW 450
            +VL  L+ R   RL + +  L          T  ALV+ + R   +  ++   + RI  +  + LR QP        PF  PW      + W        + Y+ NL V ++YRG+ + R LV+  E +A    GY ++YLH+D+D+ AA +LY+  GY  + Q     W
Sbjct:  133 EVLAGLRSRIRGRLTKNNMGLRGPYPDEEDATETALVLVLARPVQNDTKKMNKNWRIEIIGSVELRIQP---CDAKIPFTLPWLDRLERRLWNKSTKVQQQPYLSNLCVAEAYRGQSIGRALVQCVEEIAGTVWGYSKIYLHVDVDNTAAYQLYTGTGYRDVGQRWNPFW 299          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: B7FSR9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSR9_PHATC)

HSP 1 Score: 67.0 bits (162), Expect = 7.020e-10
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  136 IIEVVKLTLRQPNGSLPTNWPF-------PAPWRPV--NPVKRWETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESI 426
            +I  V+L L+  +  +P + P+        A W  +  N  +  + Y+ NL V + YRG G+ R LVR  E ++K   GY R+YLH+D D+ AA+ LY   GY  +
Sbjct:  212 VIASVELRLQLCDAKIPFSLPWLDRIERTAASWIGLGKNHARDLQPYLGNLCVAERYRGRGIGRALVRCVEDISKTKWGYSRIYLHVDKDNAAALNLYQEEGYRDV 317          
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Match: A0A7S2EB23_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EB23_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.820e-9
Identity = 36/113 (31.86%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  136 IIEVVKLTLRQPNGSLPTNWPFPAPWRPVNPVKR----------------WETYMCNLAVEKSYRGEGLRRQLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESI 426
            ++  V+L L+  +  +P    F  PW  V+ V+R                 + Y+CNL V +  RG  L + LVR  E +     GY ++YLH+DLD+ AA+ LY S G++ +
Sbjct:  217 VVATVELRLQPTDAKIP----FSQPW--VDAVERKIAKATGFDARTVDKTLQPYLCNLCVSEQMRGRKLGKALVRCVEKITTETWGYSKLYLHVDLDNVAALNLYRSEGFKDV 323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169073.4294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FVP4_ECTSI2.880e-6050.25N-acetyltransferase domain-containing protein n=2 ... [more]
D7FVP3_ECTSI2.840e-5150.82N-acetyltransferase domain-containing protein n=1 ... [more]
A0A6H5KVK2_9PHAE9.130e-4950.82N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S3EXG7_9EUKA5.870e-1433.80Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A448ZI05_9STRA8.210e-1331.67N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S4AXY7_9STRA1.450e-1041.38Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1Z5JMB9_FISSO2.110e-1033.63N-acetyltransferase domain-containing protein n=1 ... [more]
A0A1Z5KCF6_FISSO2.120e-1029.41N-acetyltransferase domain-containing protein n=1 ... [more]
B7FSR9_PHATC7.020e-1034.91Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2EB23_9STRA7.820e-931.86Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169073contigH-elongata_contig169073:261..1294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue4.4e-49
Seed eggNOG ortholog2880.D7FVP4
EggNOG free text desc.Acetyltransferase (GNAT) family
EggNOG OGs2CZCN@1,2S9Q8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size525
Cds size525
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169073.4294.1prot_H-elongata_contig169073.4294.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169073 261..1294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.3714688-CDS-H-elongata_contig169073:260..4411622929987.3714688-CDS-H-elongata_contig169073:260..441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169073 261..441 -
1691679235.8350167-CDS-H-elongata_contig169073:260..4411691679235.8350167-CDS-H-elongata_contig169073:260..441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169073 261..441 -
1622929987.3905478-CDS-H-elongata_contig169073:669..7911622929987.3905478-CDS-H-elongata_contig169073:669..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169073 670..791 -
1691679235.846863-CDS-H-elongata_contig169073:669..7911691679235.846863-CDS-H-elongata_contig169073:669..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169073 670..791 -
1622929987.4080522-CDS-H-elongata_contig169073:1072..12941622929987.4080522-CDS-H-elongata_contig169073:1072..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169073 1073..1294 -
1691679235.8666515-CDS-H-elongata_contig169073:1072..12941691679235.8666515-CDS-H-elongata_contig169073:1072..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169073 1073..1294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169073.4294.1

>prot_H-elongata_contig169073.4294.1 ID=prot_H-elongata_contig169073.4294.1|Name=mRNA_H-elongata_contig169073.4294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
QVLYALKFRCGKRLAREDFALTSEALVMAVRDSASPARRSGTSGRIIEVV
KLTLRQPNGSLPTNWPFPAPWRPVNPVKRWETYMCNLAVEKSYRGEGLRR
QLVRLCEHVAKNHCGYKRMYLHIDLDDPAAMELYSSMGYESITQYDTLVW
IRRLLGMPTMRYQVKQLRFQRPAT*
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mRNA from alignment at H-elongata_contig169073:261..1294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169073.4294.1 ID=mRNA_H-elongata_contig169073.4294.1|Name=mRNA_H-elongata_contig169073.4294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig169073:261..1294- (Himanthalia elongata Himel1 dioecious)
CAGGTTCTATACGCCCTGAAGTTTCGATGCGGCAAACGCTTGGCAAGAGA AGACTTCGCTCTTACAAGTGAAGCATTAGTTATGGCGGTGAGAGACTCTG CGTCCCCGGCAAGACGGAGTGGTACATCTGGACGAATCATCGAGGTGGTC AAATTGACGCTGCGGCAGCCGAATGGGTCGCTCCCCACGAACTGGCCTTT CCCAGCGCCCTGGCGACCAGTGGTGAGTACGAGGTTATGCCACGACATCG GAACGCGCACTTGGAGGCTCACGAAACGTTCCTGACAGCGATACCTGATA ACGCCGTGAATACACGGCCCCTAAACATTTTGAATGCACCAAATATTGCC CAATGTCGACACGGGGGGGTGGGGGTATGGTCATCACATATTGCAAAGTA TGGACCAACCGGGTGTGGTTGACAATCCTTCTCGTGGTTTAGCTGAACAG GGCAAATTGATTTTCCCTGTCCCCGTTCCCGCCTGAGAATTTGGTCGGAT CAGAATCCAGTCAAAAGATGGGAGACCTACATGTGTAATCTCGCTGTCGA GAAGAGCTACAGAGGGGAAGGACTTAGGAGGCAGCTGGTGCGGCTTTGCG AGCACGTGGCGAAGAATCATTGCGGGTGAGAGTGTTGCCTCACCGATATC TAGCCTGGAATTGTGCCTGCTCGGGGAACTTCAAGCGAGTCACGACCGTG TAACGACGTTGGTCGTTATTTTTCGGCGGTACTTTAATGGGTGGGCGGCA CTACTCCTTTGGACAGCCAATGATGCTGCGCCTCTATCGCTCTCACACCA ACCCGTCCCTCCTTATGAACTCGATATGAAAGCCACTCGGAGTTGCCCAC CAGGTACAAACGCATGTATCTGCACATTGACCTCGACGACCCCGCTGCGA TGGAACTGTACTCCTCCATGGGGTACGAGAGCATTACGCAGTATGACACT CTCGTCTGGATAAGGAGACTCCTCGGTATGCCTACGATGAGATATCAAGT CAAACAACTCCGATTTCAACGGCCCGCAACTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig169073:261..1294-

>mRNA_H-elongata_contig169073.4294.1 ID=mRNA_H-elongata_contig169073.4294.1|Name=mRNA_H-elongata_contig169073.4294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig169073:261..1294- (Himanthalia elongata Himel1 dioecious)
CAGGTTCTATACGCCCTGAAGTTTCGATGCGGCAAACGCTTGGCAAGAGA
AGACTTCGCTCTTACAAGTGAAGCATTAGTTATGGCGGTGAGAGACTCTG
CGTCCCCGGCAAGACGGAGTGGTACATCTGGACGAATCATCGAGGTGGTC
AAATTGACGCTGCGGCAGCCGAATGGGTCGCTCCCCACGAACTGGCCTTT
CCCAGCGCCCTGGCGACCAGTGCAGGTTCTATACGCCCTGAAGTTTCGAT
GCGGCAAACGCTTGGCAAGAGAAGACTTCGCTCTTACAAGTGAAGCATTA
GTTATGGCGGTGAGAGACTCTGCGTCCCCGGCAAGACGGAGTGGTACATC
TGGACGAATCATCGAGGTGGTCAAATTGACGCTGCGGCAGCCGAATGGGT
CGCTCCCCACGAACTGGCCTTTCCCAGCGCCCTGGCGACCAGTGAATCCA
GTCAAAAGATGGGAGACCTACATGTGTAATCTCGCTGTCGAGAAGAGCTA
CAGAGGGGAAGGACTTAGGAGGCAGCTGGTGCGGCTTTGCGAGCACGTGG
CGAAGAATCATTGCGGAATCCAGTCAAAAGATGGGAGACCTACATGTGTA
ATCTCGCTGTCGAGAAGAGCTACAGAGGGGAAGGACTTAGGAGGCAGCTG
GTGCGGCTTTGCGAGCACGTGGCGAAGAATCATTGCGGGTACAAACGCAT
GTATCTGCACATTGACCTCGACGACCCCGCTGCGATGGAACTGTACTCCT
CCATGGGGTACGAGAGCATTACGCAGTATGACACTCTCGTCTGGATAAGG
AGACTCCTCGGTATGCCTACGATGAGATATCAAGTCAAACAACTCCGATT
TCAACGGCCCGCAACTTAGGTACAAACGCATGTATCTGCACATTGACCTC
GACGACCCCGCTGCGATGGAACTGTACTCCTCCATGGGGTACGAGAGCAT
TACGCAGTATGACACTCTCGTCTGGATAAGGAGACTCCTCGGTATGCCTA
CGATGAGATATCAAGTCAAACAACTCCGATTTCAACGGCCCGCAACTTAG
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