mRNA_H-elongata_contig1690.4291.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1690.4291.1
Unique NamemRNA_H-elongata_contig1690.4291.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1690.4291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1690contigH-elongata_contig1690:4833..5181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.123771-UTR-H-elongata_contig1690:4832..48451622929987.123771-UTR-H-elongata_contig1690:4832..4845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1690 4833..4845 +
1691679235.7604003-UTR-H-elongata_contig1690:4832..48451691679235.7604003-UTR-H-elongata_contig1690:4832..4845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1690 4833..4845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.1391244-CDS-H-elongata_contig1690:4845..51811622929987.1391244-CDS-H-elongata_contig1690:4845..5181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1690 4846..5181 +
1691679235.7682571-CDS-H-elongata_contig1690:4845..51811691679235.7682571-CDS-H-elongata_contig1690:4845..5181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1690 4846..5181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1690.4291.1prot_H-elongata_contig1690.4291.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1690 4846..5181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1690.4291.1

>prot_H-elongata_contig1690.4291.1 ID=prot_H-elongata_contig1690.4291.1|Name=mRNA_H-elongata_contig1690.4291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MPCAVFCFFATGHAISRKFKTSMHTTPLAHNVDHPFQSMYRAVFRFLAAY
HAITWSLKAHITCATLLPNVDHPCCMHRAVLRFSAAGDSIAREFTASITS
TFLFLDLNNLFQ
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mRNA from alignment at H-elongata_contig1690:4833..5181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1690.4291.1 ID=mRNA_H-elongata_contig1690.4291.1|Name=mRNA_H-elongata_contig1690.4291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=349bp|location=Sequence derived from alignment at H-elongata_contig1690:4833..5181+ (Himanthalia elongata Himel1 dioecious)
TCCCTCCTAAAGCATGCCCTGCGCAGTATTCTGTTTTTTTGCTACCGGCC
ATGCCATATCTCGGAAATTTAAAACATCCATGCATACCACACCTCTTGCT
CACAACGTCGACCATCCCTTCCAAAGCATGTATCGTGCAGTATTCCGGTT
TCTTGCTGCCTACCATGCCATAACTTGGTCGCTTAAAGCACATATCACCT
GCGCAACTCTTCTTCCTAACGTTGATCATCCTTGCTGCATGCATCGCGCA
GTACTCCGGTTTTCTGCTGCCGGGGACTCCATAGCTCGAGAGTTTACAGC
ATCCATCACAAGCACATTTCTTTTTCTTGACCTCAATAATCTCTTTCAA
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Coding sequence (CDS) from alignment at H-elongata_contig1690:4833..5181+

>mRNA_H-elongata_contig1690.4291.1 ID=mRNA_H-elongata_contig1690.4291.1|Name=mRNA_H-elongata_contig1690.4291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig1690:4833..5181+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTGCGCAGTATTCTGTTTTTTTGCTACCGGCCATGCCATATCTCG
GAAATTTAAAACATCCATGCATACCACACCTCTTGCTCACAACGTCGACC
ATCCCTTCCAAAGCATGTATCGTGCAGTATTCCGGTTTCTTGCTGCCTAC
CATGCCATAACTTGGTCGCTTAAAGCACATATCACCTGCGCAACTCTTCT
TCCTAACGTTGATCATCCTTGCTGCATGCATCGCGCAGTACTCCGGTTTT
CTGCTGCCGGGGACTCCATAGCTCGAGAGTTTACAGCATCCATCACAAGC
ACATTTCTTTTTCTTGACCTCAATAATCTCTTTCAAATGCCCTGCGCAGT
ATTCTGTTTTTTTGCTACCGGCCATGCCATATCTCGGAAATTTAAAACAT
CCATGCATACCACACCTCTTGCTCACAACGTCGACCATCCCTTCCAAAGC
ATGTATCGTGCAGTATTCCGGTTTCTTGCTGCCTACCATGCCATAACTTG
GTCGCTTAAAGCACATATCACCTGCGCAACTCTTCTTCCTAACGTTGATC
ATCCTTGCTGCATGCATCGCGCAGTACTCCGGTTTTCTGCTGCCGGGGAC
TCCATAGCTCGAGAGTTTACAGCATCCATCACAAGCACATTTCTTTTTCT
TGACCTCAATAATCTCTTTCAA
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