mRNA_H-elongata_contig168980.4290.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168980.4290.1
Unique NamemRNA_H-elongata_contig168980.4290.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: A0A6H5JZR7_9PHAE (ENTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR7_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 2.050e-40
Identity = 74/85 (87.06%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLGGGG 255
            +AL LLEHL+KNGAERVIEDARDNLHR+R+LSDFNYYEGP+DKGSGVREKSKQ+IELL+DN+MIREEREK RKLRDKYVGLG GG
Sbjct:   90 KALCLLEHLIKNGAERVIEDARDNLHRVRMLSDFNYYEGPIDKGSGVREKSKQVIELLKDNDMIREEREKCRKLRDKYVGLGSGG 174
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BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: A0A6U4DQX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DQX0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.220e-31
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLGGGG 255
            + LSLLEHL+KNG ER++ED+RD++H+IR L+DFNYYEG  D+GSGVREK+KQ+++LL DN  IREER  AR+LRDK+VG+   G
Sbjct:   83 KTLSLLEHLIKNGPERIVEDSRDHMHKIRTLTDFNYYEGTTDRGSGVREKAKQIMDLLSDNTAIREERANARRLRDKFVGISNSG 167
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BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: A0A5D6XR73_9STRA (ENTH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR73_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.440e-30
Identity = 57/85 (67.06%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLGGGG 255
            +ALSLLEHLVKNG ERV+E+ARD++ ++R LSDF+Y++G  DKG+GVREK+KQL++LL DN++IREEREK+R+LRDK++G+G GG
Sbjct:   80 KALSLLEHLVKNGTERVVENARDHMFKLRQLSDFSYHDGSADKGAGVREKAKQLVDLLNDNDLIREEREKSRRLRDKFIGIGSGG 164
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BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: G4ZC50_PHYSP (ENTH domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZC50_PHYSP)

HSP 1 Score: 116 bits (291), Expect = 3.600e-30
Identity = 55/84 (65.48%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLGGG 252
            +ALSLLEHLVKNG ERVIE+ARD++ ++R LS F+Y++G VD+G+GVR+K+KQL+++L DN+MIR EREKA +LR+KYVG+G G
Sbjct:   58 KALSLLEHLVKNGTERVIENARDHMFKLRHLSGFSYHDGSVDRGNGVRDKAKQLVDMLNDNDMIRTEREKAGRLRNKYVGIGSG 141
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BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: A0A7S2RXX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXX9_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.700e-30
Identity = 56/84 (66.67%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLGGG 252
            +ALSL+E LVKNG ER+IEDARD + R+R LS++ +YEG +D+GSGVR+K++ +IELLRDNE IREEREKAR+LRDK+ G  GG
Sbjct:   82 KALSLMEFLVKNGNERIIEDARDRMGRLRGLSEYTFYEGSIDRGSGVRDKAQNMIELLRDNERIREEREKARQLRDKFAGFAGG 165
[Close]
BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: A0A7S1TU31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU31_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.380e-29
Identity = 55/85 (64.71%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLGGGG 255
            + LSLLEHL+KNG ER++ED+RD++H+IR L+DFNYYEG  D+GSGVREK+KQ+++LL DN  IREER  AR+LRDK+VG+   G
Sbjct:   83 KTLSLLEHLIKNGPERIVEDSRDHMHKIRTLTDFNYYEGTTDRGSGVREKAKQIMDLLSDNTAIREERANARRLRDKFVGISNSG 167
[Close]
BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: K3WLF9_GLOUD (ENTH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLF9_GLOUD)

HSP 1 Score: 123 bits (309), Expect = 1.930e-29
Identity = 55/85 (64.71%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLGGGG 255
            +ALSLL+HLVKNG ERV+E+ARD++ ++R LSDF+Y++G  DKG+GVREK+KQ+++LL DN++IREEREK+R+LRDK++G+G GG
Sbjct:   84 KALSLLDHLVKNGTERVVENARDHMFKLRQLSDFSYHDGSADKGAGVREKAKQIVDLLNDNDLIREEREKSRRLRDKFIGIGSGG 168
[Close]
BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: A0A3R6ZEP3_9STRA (ENTH domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZEP3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.810e-29
Identity = 52/85 (61.18%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLGGGG 255
            +AL+LL+HL+KNG ERV+E+ARD++ ++R LSDFNYY+G  DKG+GVREK KQ++++L DN+ IR+ER+KA++LRDKY+G+G  G
Sbjct:  137 KALALLDHLIKNGTERVVENARDHMFKLRTLSDFNYYDGSADKGAGVREKVKQILDMLNDNDRIRDERDKAKRLRDKYIGVGSTG 221
[Close]
BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: A0A1V9Z1T4_9STRA (ENTH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1T4_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.470e-29
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVGLG-----GGGY 258
            +AL+LL+HLVKNG ERV+E+ARD++ ++R LSDFNYY+G  DKG+GVREK KQ++E+L DN+ IR+EREKA++LRDKY G+G     GGGY
Sbjct:   84 KALTLLDHLVKNGTERVVENARDHMFKLRTLSDFNYYDGSADKGAGVREKVKQILEMLNDNDRIRDEREKAKRLRDKYTGVGSSGNIGGGY 174
[Close]
BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Match: A0A7S0BV73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BV73_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.140e-29
Identity = 52/80 (65.00%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREKSKQLIELLRDNEMIREEREKARKLRDKYVG 240
            +AL+LLEHLVKNG+ER ++DAR++ H++R L++FNYYEG VD+G GV+EK+KQ+IE+L DN+ IREEREKA+ LRDK+ G
Sbjct:   21 KALTLLEHLVKNGSERCVDDARNHSHKLRSLNNFNYYEGTVDRGIGVKEKAKQIIEMLSDNDQIREEREKAKNLRDKFGG 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168980.4290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZR7_9PHAE2.050e-4087.06ENTH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U4DQX0_9STRA4.220e-3164.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5D6XR73_9STRA3.440e-3067.06ENTH domain-containing protein n=1 Tax=Pythium bra... [more]
G4ZC50_PHYSP3.600e-3065.48ENTH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2RXX9_9STRA8.700e-3066.67Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1TU31_9STRA1.380e-2964.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
K3WLF9_GLOUD1.930e-2964.71ENTH domain-containing protein n=1 Tax=Globisporan... [more]
A0A3R6ZEP3_9STRA3.810e-2961.18ENTH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1V9Z1T4_9STRA4.470e-2963.74ENTH domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A7S0BV73_9STRA6.140e-2965.00Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168980contigH-elongata_contig168980:215..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue7e-26
Seed eggNOG ortholog65071.PYU1_T005801
Preferred nameENT3
KEGG koko:K12471
KEGG Pathwayko04144,map04144
GOsGO:0000147,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005856,GO:0005884,GO:0005886,GO:0005938,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008289,GO:0009579,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019899,GO:0022607,GO:0030029,GO:0030036,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030276,GO:0030479,GO:0030659,GO:0030662,GO:0030665,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031410,GO:0031982,GO:0032266,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034498,GO:0034613,GO:0035091,GO:0042147,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061645,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080025,GO:0097435,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1901981,GO:1902936
EggNOG free text desc.Source PGD
EggNOG OGs1MGDE@121069,KOG2056@1,KOG2056@2759
COG Functional cat.F
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons3
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168980.4290.1prot_H-elongata_contig168980.4290.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168980 215..917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.0270185-CDS-H-elongata_contig168980:214..3531622929987.0270185-CDS-H-elongata_contig168980:214..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168980 215..353 +
1691679235.7253022-CDS-H-elongata_contig168980:214..3531691679235.7253022-CDS-H-elongata_contig168980:214..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168980 215..353 +
1622929987.0463722-CDS-H-elongata_contig168980:488..7521622929987.0463722-CDS-H-elongata_contig168980:488..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168980 489..752 +
1691679235.738579-CDS-H-elongata_contig168980:488..7521691679235.738579-CDS-H-elongata_contig168980:488..752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168980 489..752 +
1622929987.0644815-CDS-H-elongata_contig168980:780..9171622929987.0644815-CDS-H-elongata_contig168980:780..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168980 781..917 +
1691679235.749949-CDS-H-elongata_contig168980:780..9171691679235.749949-CDS-H-elongata_contig168980:780..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168980 781..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168980.4290.1

>prot_H-elongata_contig168980.4290.1 ID=prot_H-elongata_contig168980.4290.1|Name=mRNA_H-elongata_contig168980.4290.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
QALSLLEHLVKNGAERVIEDARDNLHRIRVLSDFNYYEGPVDKGSGVREK
SKQLIELLRDNEMIREEREKARKLRDKYVGLGGGGYSGGGGGYSAGGGYG
FSGGGGGGGGGSSYSSGGGGYGGDRYGNGASRYGGDRCKEGRGGRGGGGG
GGEKERKRETTGKRVXXXXGGGGGGGGGGR
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mRNA from alignment at H-elongata_contig168980:215..917+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168980.4290.1 ID=mRNA_H-elongata_contig168980.4290.1|Name=mRNA_H-elongata_contig168980.4290.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=703bp|location=Sequence derived from alignment at H-elongata_contig168980:215..917+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCTGTCTCTCTTGGAGCACCTGGTTAAGAACGGCGCGGAACGAGT
CATCGAGGACGCCCGAGACAACCTCCATCGAATCCGCGTGCTCTCCGACT
TCAACTACTATGAGGGCCCGGTAGATAAGGGCAGCGGAGGTGGGTAGTGG
TCAGTGTGTGTCCGCGCGCCTTTGCATATTTTCGTTTAGCGCAGCAGTAA
ACGTTCATTCTCTCCCGCTTCGATGCCGACTTTTTTTTTCTTCTTTTTTT
TCTTCCCTTTTTTTCTTCGATCAGTGCGGGAAAAATCAAAGCAGCTGATC
GAGCTGCTGAGGGACAATGAGATGATCCGTGAAGAGCGTGAGAAGGCTCG
GAAGCTGAGGGACAAGTACGTCGGCCTTGGAGGAGGCGGTTACAGCGGAG
GAGGCGGTGGTTACAGCGCCGGCGGTGGTTACGGATTCAGCGGAGGAGGA
GGTGGTGGTGGCGGCGGTAGTAGCTACAGCAGCGGCGGAGGAGGCTATGG
TGGCGACCGCTACGGTAATGGGGCGTCTAGATATGGAGGTACGTAAGTAT
AAAATTATAGGGAGAGGGGATAGATGTAAGGAGGGGAGGGGAGGGAGGGG
GGGGGGGGGGGGGGGGGGAGAGAAGGAGAGGAAAAGAGAAACAACAGGAA
AAAGAGTATNNNNNNNNNNGGGAGGTGGGGGGGGGGGGGGGGGTGGGGGG
AGG
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Coding sequence (CDS) from alignment at H-elongata_contig168980:215..917+

>mRNA_H-elongata_contig168980.4290.1 ID=mRNA_H-elongata_contig168980.4290.1|Name=mRNA_H-elongata_contig168980.4290.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig168980:215..917+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCTGTCTCTCTTGGAGCACCTGGTTAAGAACGGCGCGGAACGAGT
CATCGAGGACGCCCGAGACAACCTCCATCGAATCCGCGTGCTCTCCGACT
TCAACTACTATGAGGGCCCGGTAGATAAGGGCAGCGGAGCAGGCCCTGTC
TCTCTTGGAGCACCTGGTTAAGAACGGCGCGGAACGAGTCATCGAGGACG
CCCGAGACAACCTCCATCGAATCCGCGTGCTCTCCGACTTCAACTACTAT
GAGGGCCCGGTAGATAAGGGCAGCGGAGTGCGGGAAAAATCAAAGCAGCT
GATCGAGCTGCTGAGGGACAATGAGATGATCCGTGAAGAGCGTGAGAAGG
CTCGGAAGCTGAGGGACAAGTACGTCGGCCTTGGAGGAGGCGGTTACAGC
GGAGGAGGCGGTGGTTACAGCGCCGGCGGTGGTTACGGATTCAGCGGAGG
AGGAGGTGGTGGTGGCGGCGGTAGTAGCTACAGCAGCGGCGGAGGAGGCT
ATGGTGGCGACCGCTACGGTAATGGGGCGTCTAGATATGGAGTGCGGGAA
AAATCAAAGCAGCTGATCGAGCTGCTGAGGGACAATGAGATGATCCGTGA
AGAGCGTGAGAAGGCTCGGAAGCTGAGGGACAAGTACGTCGGCCTTGGAG
GAGGCGGTTACAGCGGAGGAGGCGGTGGTTACAGCGCCGGCGGTGGTTAC
GGATTCAGCGGAGGAGGAGGTGGTGGTGGCGGCGGTAGTAGCTACAGCAG
CGGCGGAGGAGGCTATGGTGGCGACCGCTACGGTAATGGGGCGTCTAGAT
ATGGAGGGGATAGATGTAAGGAGGGGAGGGGAGGGAGGGGGGGGGGGGGG
GGGGGGGGAGAGAAGGAGAGGAAAAGAGAAACAACAGGAAAAAGAGTATN
NNNNNNNNNGGGAGGTGGGGGGGGGGGGGGGGGTGGGGGGAGGGGGATAG
ATGTAAGGAGGGGAGGGGAGGGAGGGGGGGGGGGGGGGGGGGGGGAGAGA
AGGAGAGGAAAAGAGAAACAACAGGAAAAAGAGTATNNNNNNNNNNGGGA
GGTGGGGGGGGGGGGGGGGGTGGGGGGAGG
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