mRNA_H-elongata_contig168933.4287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168933.4287.1
Unique NamemRNA_H-elongata_contig168933.4287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168933.4287.1 vs. uniprot
Match: A0A6H5L057_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L057_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.120e-39
Identity = 77/131 (58.78%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:    4 VKSKEADRLARLKRVQTEQRKSKPSGASAYSWTYFQVYTKAQYKAFALCKLCLEQQEFCRAEIKYAQSPSNLMRHLNTEFPGHRAAFDDCTRRKTG-NSSFTSSGAGAASGVTSDSTGLTGIKTYFGKDTS 393
            V  KEA+RL +LK+VQT  RKSKPSGASAY+W YF+ Y K  +KAFA+CKLC+EQ+EF R +IKY+QSPSN++ HL+T+F GH+AAF+DCT  +T    S   S AGAASG  S      GI +YF KDT+
Sbjct:  243 VSVKEAERLLKLKKVQTGVRKSKPSGASAYAWRYFEGYVKGNFKAFAVCKLCMEQKEFGREKIKYSQSPSNMLSHLHTDFAGHQAAFEDCTSSRTAAGRSLPVSAAGAASGAISGPKASAGIDSYFIKDTA 373
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168933.4287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L057_9PHAE1.120e-3958.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168933contigH-elongata_contig168933:265..711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929986.813881-CDS-H-elongata_contig168933:264..7111622929986.813881-CDS-H-elongata_contig168933:264..711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168933 265..711 +
1691679235.614977-CDS-H-elongata_contig168933:264..7111691679235.614977-CDS-H-elongata_contig168933:264..711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168933 265..711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168933.4287.1prot_H-elongata_contig168933.4287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168933 265..711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168933.4287.1

>prot_H-elongata_contig168933.4287.1 ID=prot_H-elongata_contig168933.4287.1|Name=mRNA_H-elongata_contig168933.4287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
QVKSKEADRLARLKRVQTEQRKSKPSGASAYSWTYFQVYTKAQYKAFALC
KLCLEQQEFCRAEIKYAQSPSNLMRHLNTEFPGHRAAFDDCTRRKTGNSS
FTSSGAGAASGVTSDSTGLTGIKTYFGKDTSTWHQCLVRWMVMNAIPFS
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mRNA from alignment at H-elongata_contig168933:265..711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168933.4287.1 ID=mRNA_H-elongata_contig168933.4287.1|Name=mRNA_H-elongata_contig168933.4287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig168933:265..711+ (Himanthalia elongata Himel1 dioecious)
CAGGTGAAATCGAAGGAGGCTGACCGCCTCGCGAGGTTGAAGAGGGTGCA
GACCGAGCAGCGGAAGTCGAAGCCATCTGGGGCTTCTGCGTACAGCTGGA
CATACTTCCAGGTCTACACTAAAGCGCAGTACAAAGCGTTTGCCCTGTGT
AAGCTGTGCTTGGAGCAGCAAGAGTTTTGCCGAGCAGAGATCAAGTACGC
CCAGTCGCCATCAAACCTGATGAGGCACCTCAACACCGAATTTCCCGGCC
ACCGAGCTGCCTTCGACGACTGTACAAGACGCAAGACGGGGAACTCATCT
TTCACGTCTTCCGGAGCGGGGGCGGCGTCGGGGGTGACCAGCGACTCCAC
GGGTTTGACGGGGATCAAGACCTACTTCGGCAAAGACACCTCGACCTGGC
ACCAATGTCTGGTGCGATGGATGGTGATGAACGCTATCCCCTTCTCG
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Coding sequence (CDS) from alignment at H-elongata_contig168933:265..711+

>mRNA_H-elongata_contig168933.4287.1 ID=mRNA_H-elongata_contig168933.4287.1|Name=mRNA_H-elongata_contig168933.4287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig168933:265..711+ (Himanthalia elongata Himel1 dioecious)
CAGGTGAAATCGAAGGAGGCTGACCGCCTCGCGAGGTTGAAGAGGGTGCA
GACCGAGCAGCGGAAGTCGAAGCCATCTGGGGCTTCTGCGTACAGCTGGA
CATACTTCCAGGTCTACACTAAAGCGCAGTACAAAGCGTTTGCCCTGTGT
AAGCTGTGCTTGGAGCAGCAAGAGTTTTGCCGAGCAGAGATCAAGTACGC
CCAGTCGCCATCAAACCTGATGAGGCACCTCAACACCGAATTTCCCGGCC
ACCGAGCTGCCTTCGACGACTGTACAAGACGCAAGACGGGGAACTCATCT
TTCACGTCTTCCGGAGCGGGGGCGGCGTCGGGGGTGACCAGCGACTCCAC
GGGTTTGACGGGGATCAAGACCTACTTCGGCAAAGACACCTCGACCTGGC
ACCAATGTCTGGTGCGATGGATGGTGATGAACGCTATCCCCTTCTCGCAG
GTGAAATCGAAGGAGGCTGACCGCCTCGCGAGGTTGAAGAGGGTGCAGAC
CGAGCAGCGGAAGTCGAAGCCATCTGGGGCTTCTGCGTACAGCTGGACAT
ACTTCCAGGTCTACACTAAAGCGCAGTACAAAGCGTTTGCCCTGTGTAAG
CTGTGCTTGGAGCAGCAAGAGTTTTGCCGAGCAGAGATCAAGTACGCCCA
GTCGCCATCAAACCTGATGAGGCACCTCAACACCGAATTTCCCGGCCACC
GAGCTGCCTTCGACGACTGTACAAGACGCAAGACGGGGAACTCATCTTTC
ACGTCTTCCGGAGCGGGGGCGGCGTCGGGGGTGACCAGCGACTCCACGGG
TTTGACGGGGATCAAGACCTACTTCGGCAAAGACACCTCGACCTGGCACC
AATGTCTGGTGCGATGGATGGTGATGAACGCTATCCCCTTCTCG
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