mRNA_H-elongata_contig16890.4286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16890.4286.1
Unique NamemRNA_H-elongata_contig16890.4286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16890.4286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16890contigH-elongata_contig16890:46..399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929986.7715294-CDS-H-elongata_contig16890:45..3991622929986.7715294-CDS-H-elongata_contig16890:45..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16890 46..399 -
1691679235.607327-CDS-H-elongata_contig16890:45..3991691679235.607327-CDS-H-elongata_contig16890:45..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16890 46..399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16890.4286.1prot_H-elongata_contig16890.4286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16890 46..399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16890.4286.1

>prot_H-elongata_contig16890.4286.1 ID=prot_H-elongata_contig16890.4286.1|Name=mRNA_H-elongata_contig16890.4286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
YSSYLEDYWSSAGGRSVVNAIGTLLRGLMKSGLARWRWTVEMGAVAENDM
IKRIPGARATFSLGEEYEQTDARRDSRIRFARPSSQARTGTGKNIFPVQL
TTSKIDDNHTHSLEGLA*
back to top

mRNA from alignment at H-elongata_contig16890:46..399-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16890.4286.1 ID=mRNA_H-elongata_contig16890.4286.1|Name=mRNA_H-elongata_contig16890.4286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig16890:46..399- (Himanthalia elongata Himel1 dioecious)
TACTCAAGCTACCTTGAGGACTACTGGTCTAGTGCCGGTGGACGCTCGGT
GGTAAACGCCATCGGTACGCTACTGCGTGGCCTGATGAAATCGGGATTGG
CCCGATGGCGGTGGACGGTAGAGATGGGCGCCGTCGCGGAAAACGATATG
ATCAAGAGGATCCCGGGAGCACGCGCCACATTCAGCCTGGGCGAGGAGTA
TGAGCAGACTGACGCGAGACGAGACAGCCGAATCCGTTTCGCGAGACCAA
GTTCTCAGGCGCGAACTGGGACAGGAAAAAACATTTTCCCCGTTCAACTA
ACCACAAGCAAAATTGATGATAACCATACACACAGCCTAGAAGGACTAGC
ATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig16890:46..399-

>mRNA_H-elongata_contig16890.4286.1 ID=mRNA_H-elongata_contig16890.4286.1|Name=mRNA_H-elongata_contig16890.4286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig16890:46..399- (Himanthalia elongata Himel1 dioecious)
TACTCAAGCTACCTTGAGGACTACTGGTCTAGTGCCGGTGGACGCTCGGT
GGTAAACGCCATCGGTACGCTACTGCGTGGCCTGATGAAATCGGGATTGG
CCCGATGGCGGTGGACGGTAGAGATGGGCGCCGTCGCGGAAAACGATATG
ATCAAGAGGATCCCGGGAGCACGCGCCACATTCAGCCTGGGCGAGGAGTA
TGAGCAGACTGACGCGAGACGAGACAGCCGAATCCGTTTCGCGAGACCAA
GTTCTCAGGCGCGAACTGGGACAGGAAAAAACATTTTCCCCGTTCAACTA
ACCACAAGCAAAATTGATGATAACCATACACACAGCCTAGAAGGACTAGC
ATGATACTCAAGCTACCTTGAGGACTACTGGTCTAGTGCCGGTGGACGCT
CGGTGGTAAACGCCATCGGTACGCTACTGCGTGGCCTGATGAAATCGGGA
TTGGCCCGATGGCGGTGGACGGTAGAGATGGGCGCCGTCGCGGAAAACGA
TATGATCAAGAGGATCCCGGGAGCACGCGCCACATTCAGCCTGGGCGAGG
AGTATGAGCAGACTGACGCGAGACGAGACAGCCGAATCCGTTTCGCGAGA
CCAAGTTCTCAGGCGCGAACTGGGACAGGAAAAAACATTTTCCCCGTTCA
ACTAACCACAAGCAAAATTGATGATAACCATACACACAGCCTAGAAGGAC
TAGCATGA
back to top