mRNA_H-elongata_contig168863.4285.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168863.4285.1
Unique NamemRNA_H-elongata_contig168863.4285.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig168863.4285.1 vs. uniprot
Match: A0A6H5KIJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.700e-11
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 GDEPEHCDPSSVEFYVARVAYQVYCEYQVQLLRDIDGEILDTAL 132
            GD PEH D S+VEFYVA+V YQ YCEYQ+QLLRD+D  + DT +
Sbjct:   18 GDNPEHSDTSTVEFYVAKVGYQAYCEYQMQLLRDVD--VQDTRV 59
[Close]
BLAST of mRNA_H-elongata_contig168863.4285.1 vs. uniprot
Match: D8LTV8_ECTSI (PhoD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.100e-11
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 GDEPEHCDPSSVEFYVARVAYQVYCEYQVQLLRDIDGEILDTAL 132
            GD PEH D S+VEFYVA+V YQ YCEYQ+QLLRD+D  + DT +
Sbjct:  234 GDNPEHSDTSTVEFYVAKVGYQAYCEYQMQLLRDVD--VQDTRV 275
[Close]
BLAST of mRNA_H-elongata_contig168863.4285.1 vs. uniprot
Match: D8LTV9_ECTSI (PhoD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTV9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 GDEPEHCDPSSVEFYVARVAYQVYCEYQVQLLRDID 108
            GDEPEH + ++ +FYVARV YQVYCEYQ QLL +ID
Sbjct:  288 GDEPEHSNHTTPDFYVARVGYQVYCEYQKQLLNEID 323
[Close]
BLAST of mRNA_H-elongata_contig168863.4285.1 vs. uniprot
Match: A0A6H5JSS6_9PHAE (PhoD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSS6_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.740e-7
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 GDEPEHCDPSSVEFYVARVAYQVYCEYQVQLLRDID 108
            GDEP+H +PS++ FYVA +AYQVY EYQ QLL D D
Sbjct:  182 GDEPDHHNPSTLAFYVATLAYQVYNEYQHQLLEDCD 217
[Close]
BLAST of mRNA_H-elongata_contig168863.4285.1 vs. uniprot
Match: D7FMC9_ECTSI (PhoD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 GDEPEHCDPSSVEFYVARVAYQVYCEYQVQLLRDID 108
            GDEPEH +PS++ FYVA +AYQVY EYQ QL  D D
Sbjct:  182 GDEPEHHNPSTLAFYVATLAYQVYNEYQHQLHEDCD 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168863.4285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KIJ5_9PHAE3.700e-1165.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTV8_ECTSI4.100e-1165.91PhoD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LTV9_ECTSI1.140e-869.44PhoD domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JSS6_9PHAE4.740e-766.67PhoD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FMC9_ECTSI1.710e-666.67PhoD domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168863contigH-elongata_contig168863:233..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929986.7256486-CDS-H-elongata_contig168863:232..3671622929986.7256486-CDS-H-elongata_contig168863:232..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168863 233..367 -
1691679235.5993307-CDS-H-elongata_contig168863:232..3671691679235.5993307-CDS-H-elongata_contig168863:232..367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168863 233..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168863.4285.1prot_H-elongata_contig168863.4285.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168863 233..367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168863.4285.1

>prot_H-elongata_contig168863.4285.1 ID=prot_H-elongata_contig168863.4285.1|Name=mRNA_H-elongata_contig168863.4285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
GDEPEHCDPSSVEFYVARVAYQVYCEYQVQLLRDIDGEILDTAL*
back to top

mRNA from alignment at H-elongata_contig168863:233..367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168863.4285.1 ID=mRNA_H-elongata_contig168863.4285.1|Name=mRNA_H-elongata_contig168863.4285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig168863:233..367- (Himanthalia elongata Himel1 dioecious)
GGTGACGAACCGGAACACTGTGATCCATCTTCCGTGGAGTTCTACGTGGC
AAGGGTAGCCTACCAGGTGTACTGCGAGTACCAAGTTCAGCTCTTGAGAG
ACATTGACGGTGAGATACTCGATACAGCTTTATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig168863:233..367-

>mRNA_H-elongata_contig168863.4285.1 ID=mRNA_H-elongata_contig168863.4285.1|Name=mRNA_H-elongata_contig168863.4285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig168863:233..367- (Himanthalia elongata Himel1 dioecious)
GGTGACGAACCGGAACACTGTGATCCATCTTCCGTGGAGTTCTACGTGGC
AAGGGTAGCCTACCAGGTGTACTGCGAGTACCAAGTTCAGCTCTTGAGAG
ACATTGACGGTGAGATACTCGATACAGCTTTATAAGGTGACGAACCGGAA
CACTGTGATCCATCTTCCGTGGAGTTCTACGTGGCAAGGGTAGCCTACCA
GGTGTACTGCGAGTACCAAGTTCAGCTCTTGAGAGACATTGACGGTGAGA
TACTCGATACAGCTTTATAA
back to top