mRNA_H-elongata_contig168735.4279.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168735.4279.1
Unique NamemRNA_H-elongata_contig168735.4279.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168735.4279.1 vs. uniprot
Match: A0A6H5LE27_9PHAE (FK protein ( GFPPprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE27_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.950e-15
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   13 GPTTVFCVAPLDPTPSSTTTQGAEWDGPLAMNALLVVAERYSALKRARFGSETSAAALRGMRVLLCLE 216
            G    FCV P  P P  T  +  + DGPL +NALLVVAERYSALKRARFGS+TSA ALRGM VLLC+E
Sbjct:  743 GAMAAFCVPP--PRPCDTPDRRMDRDGPLVLNALLVVAERYSALKRARFGSDTSAEALRGMCVLLCVE 808
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BLAST of mRNA_H-elongata_contig168735.4279.1 vs. uniprot
Match: D7FJB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB0_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.830e-15
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   28 FCVAPLDPTPSSTTTQGAEWDGPLAMNALLVVAERYSALKRARFGSETSAAALRGMRVLLCL 213
            FCV P  P P  T  +  + DGP+ +NALLVVAERYSALKRARFGS+TSA ALRGM VLLCL
Sbjct:    4 FCVPP--PRPCDTPDRQLDRDGPIVLNALLVVAERYSALKRARFGSDTSAEALRGMCVLLCL 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168735.4279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LE27_9PHAE4.950e-1566.18FK protein ( GFPPprotein ) n=1 Tax=Ectocarpus sp. ... [more]
D7FJB0_ECTSI5.830e-1569.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168735contigH-elongata_contig168735:158..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size343
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.327327-CDS-H-elongata_contig168735:157..4991622929985.327327-CDS-H-elongata_contig168735:157..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168735 158..499 +
1691679235.218924-CDS-H-elongata_contig168735:157..4991691679235.218924-CDS-H-elongata_contig168735:157..499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168735 158..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168735.4279.1prot_H-elongata_contig168735.4279.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168735 158..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168735.4279.1

>prot_H-elongata_contig168735.4279.1 ID=prot_H-elongata_contig168735.4279.1|Name=mRNA_H-elongata_contig168735.4279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
DINEGPTTVFCVAPLDPTPSSTTTQGAEWDGPLAMNALLVVAERYSALKR
ARFGSETSAAALRGMRVLLCLERENCIDRLFVEDLCGQKLPLPGREDSGE
TRELDAVTLRRFSC
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mRNA from alignment at H-elongata_contig168735:158..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168735.4279.1 ID=mRNA_H-elongata_contig168735.4279.1|Name=mRNA_H-elongata_contig168735.4279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=343bp|location=Sequence derived from alignment at H-elongata_contig168735:158..500+ (Himanthalia elongata Himel1 dioecious)
GATATCAACGAGGGACCGACGACGGTCTTCTGCGTGGCCCCGCTGGACCC
GACTCCGTCGTCCACAACGACCCAGGGGGCGGAATGGGACGGTCCCCTGG
CGATGAACGCCCTTTTGGTGGTGGCGGAGCGTTACAGCGCACTCAAGAGG
GCTCGGTTCGGGTCGGAAACAAGTGCTGCGGCCTTGCGAGGCATGCGTGT
CTTGTTGTGCCTGGAGAGGGAAAATTGCATCGATCGATTGTTCGTCGAAG
ATCTTTGTGGACAAAAGCTGCCCTTGCCCGGGAGGGAAGACTCCGGTGAG
ACGAGGGAGTTAGACGCTGTAACGTTGCGACGTTTTTCCTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig168735:158..500+

>mRNA_H-elongata_contig168735.4279.1 ID=mRNA_H-elongata_contig168735.4279.1|Name=mRNA_H-elongata_contig168735.4279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig168735:158..500+ (Himanthalia elongata Himel1 dioecious)
GATATCAACGAGGGACCGACGACGGTCTTCTGCGTGGCCCCGCTGGACCC
GACTCCGTCGTCCACAACGACCCAGGGGGCGGAATGGGACGGTCCCCTGG
CGATGAACGCCCTTTTGGTGGTGGCGGAGCGTTACAGCGCACTCAAGAGG
GCTCGGTTCGGGTCGGAAACAAGTGCTGCGGCCTTGCGAGGCATGCGTGT
CTTGTTGTGCCTGGAGAGGGAAAATTGCATCGATCGATTGTTCGTCGAAG
ATCTTTGTGGACAAAAGCTGCCCTTGCCCGGGAGGGAAGACTCCGGTGAG
ACGAGGGAGTTAGACGCTGTAACGTTGCGACGTTTTTCCTGCGATATCAA
CGAGGGACCGACGACGGTCTTCTGCGTGGCCCCGCTGGACCCGACTCCGT
CGTCCACAACGACCCAGGGGGCGGAATGGGACGGTCCCCTGGCGATGAAC
GCCCTTTTGGTGGTGGCGGAGCGTTACAGCGCACTCAAGAGGGCTCGGTT
CGGGTCGGAAACAAGTGCTGCGGCCTTGCGAGGCATGCGTGTCTTGTTGT
GCCTGGAGAGGGAAAATTGCATCGATCGATTGTTCGTCGAAGATCTTTGT
GGACAAAAGCTGCCCTTGCCCGGGAGGGAAGACTCCGGTGAGACGAGGGA
GTTAGACGCTGTAACGTTGCGACGTTTTTCCTGC
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