mRNA_H-elongata_contig168734.4278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168734.4278.1
Unique NamemRNA_H-elongata_contig168734.4278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168734.4278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168734contigH-elongata_contig168734:34..1194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1161
Cds size1143
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.2531283-CDS-H-elongata_contig168734:33..11761622929985.2531283-CDS-H-elongata_contig168734:33..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168734 34..1176 -
1691679235.1997488-CDS-H-elongata_contig168734:33..11761691679235.1997488-CDS-H-elongata_contig168734:33..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168734 34..1176 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.2710774-UTR-H-elongata_contig168734:1176..11941622929985.2710774-UTR-H-elongata_contig168734:1176..1194Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig168734 1177..1194 -
1691679235.207743-UTR-H-elongata_contig168734:1176..11941691679235.207743-UTR-H-elongata_contig168734:1176..1194Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig168734 1177..1194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168734.4278.1prot_H-elongata_contig168734.4278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168734 34..1176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168734.4278.1

>prot_H-elongata_contig168734.4278.1 ID=prot_H-elongata_contig168734.4278.1|Name=mRNA_H-elongata_contig168734.4278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=381bp
METAVETVEETEVKPAIEPAVEATDEINGKAVAEPVPEPAIESAVEEVAE
PVVESVAEPAVEPAVEAVTKDDMKPTVESTIESAVENLEPVIKQAPEPAV
ESPMEAAVEIVEETEVKPAIEPAVKAMDEINGEAVVEPVAEPAIESPVEA
TDEINVKAVVEPVAEPAIESAVEKVAEPVVKPAVEPAIETVTEDDMKPTV
ESTAESTIESAVEEVAEPVVEPVAEPAVEPAVEAVTEDDMKPTAESTAES
AIKPAVENLEPVIERAPEPAVEFAMEAVVETVEETEVKPAIEPVIEAMDE
INGEAVAGPVAEPAIVSAVEEVAEPVVEPVVERVTEDDIKPTVESTAEST
IEPAVENLEPVIEPTSKPAPEPAVESAMEAA
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mRNA from alignment at H-elongata_contig168734:34..1194-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168734.4278.1 ID=mRNA_H-elongata_contig168734.4278.1|Name=mRNA_H-elongata_contig168734.4278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1161bp|location=Sequence derived from alignment at H-elongata_contig168734:34..1194- (Himanthalia elongata Himel1 dioecious)
CCGGCAGTTGAGTCTGCAATGGAGACAGCGGTTGAGACAGTAGAAGAAAC
CGAAGTCAAGCCGGCGATCGAGCCCGCGGTCGAGGCGACGGACGAGATCA
ATGGCAAAGCGGTAGCCGAGCCTGTTCCCGAGCCGGCGATCGAGTCTGCG
GTCGAGGAGGTGGCAGAACCCGTGGTCGAGTCGGTGGCCGAGCCTGCAGT
CGAGCCTGCGGTCGAGGCAGTTACCAAGGATGATATGAAGCCCACGGTCG
AGTCGACGATCGAGTCCGCGGTCGAAAATCTTGAACCCGTGATTAAGCAG
GCACCCGAGCCGGCAGTTGAGTCTCCAATGGAGGCAGCGGTTGAGATAGT
AGAAGAAACCGAAGTCAAGCCGGCGATCGAGCCCGCGGTCAAGGCTATGG
ACGAGATCAATGGCGAAGCGGTCGTCGAGCCCGTTGCCGAGCCGGCGATC
GAGTCCCCGGTCGAGGCGACGGACGAGATCAATGTCAAAGCGGTGGTCGA
GCCTGTTGCCGAGCCGGCGATCGAGTCTGCAGTAGAGAAGGTGGCAGAAC
CCGTGGTCAAGCCTGCAGTCGAGCCTGCGATCGAGACAGTTACCGAGGAT
GATATGAAGCCCACCGTCGAGTCGACGGCTGAGTCGACGATCGAGTCTGC
GGTCGAGGAGGTGGCAGAACCTGTGGTCGAGCCGGTGGCCGAGCCTGCAG
TCGAGCCTGCGGTCGAGGCAGTTACCGAGGATGATATGAAGCCCACGGCC
GAGTCAACGGCTGAGTCGGCGATCAAGCCCGCGGTCGAAAATCTCGAACC
CGTGATTGAGCGGGCACCCGAGCCGGCAGTTGAGTTTGCAATGGAAGCAG
TGGTTGAGACAGTAGAAGAAACCGAAGTCAAGCCGGCGATCGAGCCCGTC
ATTGAGGCGATGGATGAGATCAATGGTGAAGCGGTGGCTGGGCCCGTTGC
CGAGCCGGCGATCGTGTCTGCAGTCGAGGAGGTAGCAGAACCCGTGGTCG
AGCCGGTGGTCGAGAGAGTTACAGAGGATGATATTAAGCCCACGGTCGAG
TCGACAGCTGAGTCGACGATCGAGCCCGCGGTCGAAAATCTCGAACCCGT
GATTGAGCCGACATCCAAGCCGGCACCCGAGCCGGCAGTTGAGTCTGCAA
TGGAGGCAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig168734:34..1194-

>mRNA_H-elongata_contig168734.4278.1 ID=mRNA_H-elongata_contig168734.4278.1|Name=mRNA_H-elongata_contig168734.4278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2286bp|location=Sequence derived from alignment at H-elongata_contig168734:34..1194- (Himanthalia elongata Himel1 dioecious)
ATGGAGACAGCGGTTGAGACAGTAGAAGAAACCGAAGTCAAGCCGGCGAT
CGAGCCCGCGGTCGAGGCGACGGACGAGATCAATGGCAAAGCGGTAGCCG
AGCCTGTTCCCGAGCCGGCGATCGAGTCTGCGGTCGAGGAGGTGGCAGAA
CCCGTGGTCGAGTCGGTGGCCGAGCCTGCAGTCGAGCCTGCGGTCGAGGC
AGTTACCAAGGATGATATGAAGCCCACGGTCGAGTCGACGATCGAGTCCG
CGGTCGAAAATCTTGAACCCGTGATTAAGCAGGCACCCGAGCCGGCAGTT
GAGTCTCCAATGGAGGCAGCGGTTGAGATAGTAGAAGAAACCGAAGTCAA
GCCGGCGATCGAGCCCGCGGTCAAGGCTATGGACGAGATCAATGGCGAAG
CGGTCGTCGAGCCCGTTGCCGAGCCGGCGATCGAGTCCCCGGTCGAGGCG
ACGGACGAGATCAATGTCAAAGCGGTGGTCGAGCCTGTTGCCGAGCCGGC
GATCGAGTCTGCAGTAGAGAAGGTGGCAGAACCCGTGGTCAAGCCTGCAG
TCGAGCCTGCGATCGAGACAGTTACCGAGGATGATATGAAGCCCACCGTC
GAGTCGACGGCTGAGTCGACGATCGAGTCTGCGGTCGAGGAGGTGGCAGA
ACCTGTGGTCGAGCCGGTGGCCGAGCCTGCAGTCGAGCCTGCGGTCGAGG
CAGTTACCGAGGATGATATGAAGCCCACGGCCGAGTCAACGGCTGAGTCG
GCGATCAAGCCCGCGGTCGAAAATCTCGAACCCGTGATTGAGCGGGCACC
CGAGCCGGCAGTTGAGTTTGCAATGGAAGCAGTGGTTGAGACAGTAGAAG
AAACCGAAGTCAAGCCGGCGATCGAGCCCGTCATTGAGGCGATGGATGAG
ATCAATGGTGAAGCGGTGGCTGGGCCCGTTGCCGAGCCGGCGATCGTGTC
TGCAGTCGAGGAGGTAGCAGAACCCGTGGTCGAGCCGGTGGTCGAGAGAG
TTACAGAGGATGATATTAAGCCCACGGTCGAGTCGACAGCTGAGTCGACG
ATCGAGCCCGCGGTCGAAAATCTCGAACCCGTGATTGAGCCGACATCCAA
GCCGGCACCCGAGCCGGCAGTTGAGTCTGCAATGGAGGCAGCAATGGAGA
CAGCGGTTGAGACAGTAGAAGAAACCGAAGTCAAGCCGGCGATCGAGCCC
GCGGTCGAGGCGACGGACGAGATCAATGGCAAAGCGGTAGCCGAGCCTGT
TCCCGAGCCGGCGATCGAGTCTGCGGTCGAGGAGGTGGCAGAACCCGTGG
TCGAGTCGGTGGCCGAGCCTGCAGTCGAGCCTGCGGTCGAGGCAGTTACC
AAGGATGATATGAAGCCCACGGTCGAGTCGACGATCGAGTCCGCGGTCGA
AAATCTTGAACCCGTGATTAAGCAGGCACCCGAGCCGGCAGTTGAGTCTC
CAATGGAGGCAGCGGTTGAGATAGTAGAAGAAACCGAAGTCAAGCCGGCG
ATCGAGCCCGCGGTCAAGGCTATGGACGAGATCAATGGCGAAGCGGTCGT
CGAGCCCGTTGCCGAGCCGGCGATCGAGTCCCCGGTCGAGGCGACGGACG
AGATCAATGTCAAAGCGGTGGTCGAGCCTGTTGCCGAGCCGGCGATCGAG
TCTGCAGTAGAGAAGGTGGCAGAACCCGTGGTCAAGCCTGCAGTCGAGCC
TGCGATCGAGACAGTTACCGAGGATGATATGAAGCCCACCGTCGAGTCGA
CGGCTGAGTCGACGATCGAGTCTGCGGTCGAGGAGGTGGCAGAACCTGTG
GTCGAGCCGGTGGCCGAGCCTGCAGTCGAGCCTGCGGTCGAGGCAGTTAC
CGAGGATGATATGAAGCCCACGGCCGAGTCAACGGCTGAGTCGGCGATCA
AGCCCGCGGTCGAAAATCTCGAACCCGTGATTGAGCGGGCACCCGAGCCG
GCAGTTGAGTTTGCAATGGAAGCAGTGGTTGAGACAGTAGAAGAAACCGA
AGTCAAGCCGGCGATCGAGCCCGTCATTGAGGCGATGGATGAGATCAATG
GTGAAGCGGTGGCTGGGCCCGTTGCCGAGCCGGCGATCGTGTCTGCAGTC
GAGGAGGTAGCAGAACCCGTGGTCGAGCCGGTGGTCGAGAGAGTTACAGA
GGATGATATTAAGCCCACGGTCGAGTCGACAGCTGAGTCGACGATCGAGC
CCGCGGTCGAAAATCTCGAACCCGTGATTGAGCCGACATCCAAGCCGGCA
CCCGAGCCGGCAGTTGAGTCTGCAATGGAGGCAGCA
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