mRNA_H-elongata_contig168695.4277.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168695.4277.1
Unique NamemRNA_H-elongata_contig168695.4277.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: A0A226NTF9_COLVI (Selenoprotein O n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226NTF9_COLVI)

HSP 1 Score: 86.7 bits (213), Expect = 5.830e-20
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GN+LLPG++P AHCYCGHQFGSFAGQLGDGAA+YLGEVRGP G
Sbjct:  120 SGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVRGPSG 163
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: A0A6H5JV32_9PHAE (Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV32_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.250e-19
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GNKL+PGAQPHAH YCGHQFGSFAGQLGDGAAMYLGEV GP G
Sbjct:  176 SGNKLMPGAQPHAHAYCGHQFGSFAGQLGDGAAMYLGEVEGPSG 219
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: A0A8C9LFE9_PAVCR (Selenoprotein O n=1 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9LFE9_PAVCR)

HSP 1 Score: 86.7 bits (213), Expect = 1.800e-19
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GN+LLPG++P AHCYCGHQFGSFAGQLGDGAA+YLGEVRGP G
Sbjct:  110 SGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVRGPRG 153
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: U3I5P4_ANAPP (Selenoprotein O n=13 Tax=Neognathae TaxID=8825 RepID=U3I5P4_ANAPP)

HSP 1 Score: 87.0 bits (214), Expect = 8.100e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEGG 135
            +GN+LLPG++P AHCYCGHQFGSFAGQLGDGAAMYLGEV GP GG
Sbjct:  225 SGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPRGG 269
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: A0A1D5PL85_CHICK (Selenoprotein O n=1 Tax=Gallus gallus TaxID=9031 RepID=A0A1D5PL85_CHICK)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-18
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GN+LLPG++P AHCYCGHQFGSFAGQLGDGAA+YLGEVRGP G
Sbjct:  308 SGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVRGPRG 351
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: A0A669P4B4_PHACC (Selenoprotein O n=12 Tax=Neognathae TaxID=8825 RepID=A0A669P4B4_PHACC)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-18
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GN+LLPG++P AHCYCGHQFGSFAGQLGDGAA+YLGEVRGP G
Sbjct:  117 SGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVRGPRG 160
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: A0A8C9FZU1_PAVCR (Selenoprotein O n=1 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9FZU1_PAVCR)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-18
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GN+LLPG++P AHCYCGHQFGSFAGQLGDGAA+YLGEVRGP G
Sbjct:  309 SGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVRGPRG 352
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: A0A8J6FNZ4_ELECQ (Selenoprotein O n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FNZ4_ELECQ)

HSP 1 Score: 85.9 bits (211), Expect = 2.060e-18
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GN+LLPG+QP AHCYCGHQFGSFAGQLGDGAAMYLGEV  PEG
Sbjct:  116 SGNRLLPGSQPAAHCYCGHQFGSFAGQLGDGAAMYLGEVINPEG 159
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BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: UPI001301CA12 (protein adenylyltransferase SelO, mitochondrial n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=UPI001301CA12)

HSP 1 Score: 85.1 bits (209), Expect = 3.850e-18
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GN LLPG++P AHCYCGHQFGSFAGQLGDGAAMYLGEV GP+G
Sbjct:  162 SGNALLPGSEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPDG 205
[Close]
BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Match: A0A7K7W461_9AVES (Selenoprotein O (Fragment) n=7 Tax=Aves TaxID=8782 RepID=A0A7K7W461_9AVES)

HSP 1 Score: 84.7 bits (208), Expect = 5.220e-18
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEG 132
            +GN+LLPG++P AHCYCGHQFGSFAGQLGDGAAMYLGEV GP G
Sbjct:   11 SGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPGG 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168695.4277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A226NTF9_COLVI5.830e-2084.09Selenoprotein O n=1 Tax=Colinus virginianus TaxID=... [more]
A0A6H5JV32_9PHAE1.250e-1988.64Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A8C9LFE9_PAVCR1.800e-1984.09Selenoprotein O n=1 Tax=Pavo cristatus TaxID=9049 ... [more]
U3I5P4_ANAPP8.100e-1984.44Selenoprotein O n=13 Tax=Neognathae TaxID=8825 Rep... [more]
A0A1D5PL85_CHICK1.110e-1884.09Selenoprotein O n=1 Tax=Gallus gallus TaxID=9031 R... [more]
A0A669P4B4_PHACC1.110e-1884.09Selenoprotein O n=12 Tax=Neognathae TaxID=8825 Rep... [more]
A0A8C9FZU1_PAVCR1.110e-1884.09Selenoprotein O n=1 Tax=Pavo cristatus TaxID=9049 ... [more]
A0A8J6FNZ4_ELECQ2.060e-1886.36Selenoprotein O n=1 Tax=Eleutherodactylus coqui Ta... [more]
UPI001301CA123.850e-1884.09protein adenylyltransferase SelO, mitochondrial n=... [more]
A0A7K7W461_9AVES5.220e-1884.09Selenoprotein O (Fragment) n=7 Tax=Aves TaxID=8782... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168695contigH-elongata_contig168695:625..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog2880.D8LIY8
Preferred nameSELENOO
KEGG koko:K20865
KEGG Pathwayko04621,map04621
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Uncharacterized ACR, YdiU/UPF0061 family
EggNOG OGsCOG0397@1,KOG2542@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.202103-CDS-H-elongata_contig168695:624..7621622929985.202103-CDS-H-elongata_contig168695:624..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168695 625..762 -
1691679235.188652-CDS-H-elongata_contig168695:624..7621691679235.188652-CDS-H-elongata_contig168695:624..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168695 625..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168695.4277.1prot_H-elongata_contig168695.4277.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168695 625..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168695.4277.1

>prot_H-elongata_contig168695.4277.1 ID=prot_H-elongata_contig168695.4277.1|Name=mRNA_H-elongata_contig168695.4277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
AGNKLLPGAQPHAHCYCGHQFGSFAGQLGDGAAMYLGEVRGPEGG*
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mRNA from alignment at H-elongata_contig168695:625..762-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168695.4277.1 ID=mRNA_H-elongata_contig168695.4277.1|Name=mRNA_H-elongata_contig168695.4277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig168695:625..762- (Himanthalia elongata Himel1 dioecious)
GCAGGAAACAAGCTTCTCCCTGGTGCCCAGCCTCACGCTCACTGCTACTG
CGGTCACCAGTTCGGGTCGTTCGCCGGGCAGCTCGGTGATGGAGCCGCGA
TGTATCTGGGAGAAGTCCGGGGACCCGAGGGAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig168695:625..762-

>mRNA_H-elongata_contig168695.4277.1 ID=mRNA_H-elongata_contig168695.4277.1|Name=mRNA_H-elongata_contig168695.4277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig168695:625..762- (Himanthalia elongata Himel1 dioecious)
GCAGGAAACAAGCTTCTCCCTGGTGCCCAGCCTCACGCTCACTGCTACTG
CGGTCACCAGTTCGGGTCGTTCGCCGGGCAGCTCGGTGATGGAGCCGCGA
TGTATCTGGGAGAAGTCCGGGGACCCGAGGGAGGGTGAGCAGGAAACAAG
CTTCTCCCTGGTGCCCAGCCTCACGCTCACTGCTACTGCGGTCACCAGTT
CGGGTCGTTCGCCGGGCAGCTCGGTGATGGAGCCGCGATGTATCTGGGAG
AAGTCCGGGGACCCGAGGGAGGGTGA
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