mRNA_H-elongata_contig168563.4271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168563.4271.1
Unique NamemRNA_H-elongata_contig168563.4271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: D8LKD0_ECTSI (SsrA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD0_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.050e-15
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   10 GREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHK 132
            G  QAK GQCFLHG+HIAEC  +NR+YQH+P RPRRLLLHK
Sbjct:   40 GFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHK 80
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BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: A0A7S3EVW1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVW1_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 3.590e-7
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 LYPGREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHK 132
            L  G  + KDG+C+L  VHIA+  +T  ++QH+ TRPRRLLLHK
Sbjct:   85 LRDGYCRIKDGECWLMNVHIAKHGTTGAFFQHEETRPRRLLLHK 128
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BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: UPI001FB51A9E (SsrA-binding protein SmpB n=1 Tax=Pseudodesulfovibrio tunisiensis TaxID=463192 RepID=UPI001FB51A9E)

HSP 1 Score: 51.6 bits (122), Expect = 8.840e-7
Identity = 26/41 (63.41%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:   10 GREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHK 132
            G  + KDGQ FL GVHIA    T  Y QH P RPRRLLLHK
Sbjct:   53 GYVRFKDGQAFLVGVHIAPYEKTGIYDQHDPERPRRLLLHK 93
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BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: A0A126QKP6_9DELT (SsrA-binding protein n=3 Tax=Pseudodesulfovibrio TaxID=2035811 RepID=A0A126QKP6_9DELT)

HSP 1 Score: 48.5 bits (114), Expect = 1.340e-5
Identity = 23/36 (63.89%), Postives = 24/36 (66.67%), Query Frame = 1 
Query:   25 KDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHK 132
            +DG  FL GVHIA    T  Y QH P RPRRLLLHK
Sbjct:   59 RDGSAFLLGVHIAPYDKTGAYDQHDPERPRRLLLHK 94
[Close]
BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: K9FEP1_9CYAN (SsrA-binding protein n=8 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9FEP1_9CYAN)

HSP 1 Score: 48.5 bits (114), Expect = 1.380e-5
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 LYPGREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHKV 135
            L  G  Q K+G+ +L  VHI+    TN+ Y H+P RPRRLLLHK 
Sbjct:   54 LRDGYAQVKNGEVWLLNVHISPHDMTNQAYNHEPRRPRRLLLHKA 98
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BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: UPI001E3C48B5 (SsrA-binding protein SmpB n=1 Tax=Pseudodesulfovibrio sp. SF6 TaxID=2810563 RepID=UPI001E3C48B5)

HSP 1 Score: 48.1 bits (113), Expect = 1.910e-5
Identity = 24/42 (57.14%), Postives = 25/42 (59.52%), Query Frame = 1 
Query:   10 GREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHKV 135
            G  Q +D   FL GVHIA    T  Y QH P RPRRLLLHK 
Sbjct:   55 GYVQFRDNSAFLVGVHIAPYDKTGLYDQHDPERPRRLLLHKA 96
[Close]
BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: A0A3M1SUQ7_9BACT (SsrA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1SUQ7_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 3.520e-5
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   19 QAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHK 132
            + ++G+ +LHG+HIA  A  N + QH+PTRPR+LLL K
Sbjct:   54 RVRNGEVWLHGLHIAPYACGNSWSQHEPTRPRKLLLRK 91
[Close]
BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: UPI0003B72AAA (SsrA-binding protein SmpB n=1 Tax=Paucidesulfovibrio longus TaxID=889 RepID=UPI0003B72AAA)

HSP 1 Score: 47.4 bits (111), Expect = 3.790e-5
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:   10 GREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHK 132
            G  + KDG+ +L GVHIA    T  Y QH P RPR+LLLHK
Sbjct:   56 GYVRLKDGEAWLVGVHIAPWDHTGPYDQHDPERPRKLLLHK 96
[Close]
BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: A0A1Z3HG83_9CYAN (SsrA-binding protein n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HG83_9CYAN)

HSP 1 Score: 46.6 bits (109), Expect = 6.990e-5
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 LYPGREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLH 129
            L  G  Q +DG+ +LH VHI+  + TN  Y H+P R R+LLLH
Sbjct:   48 LRDGFAQIRDGEVWLHNVHISPHSGTNPAYNHEPRRSRKLLLH 90
[Close]
BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Match: E6VQR5_PSEA9 (SsrA-binding protein n=2 Tax=Pseudodesulfovibrio TaxID=2035811 RepID=E6VQR5_PSEA9)

HSP 1 Score: 46.6 bits (109), Expect = 7.160e-5
Identity = 23/41 (56.10%), Postives = 25/41 (60.98%), Query Frame = 1 
Query:   10 GREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHK 132
            G  Q +D   FL GVHIA    T  Y QH P RPR+LLLHK
Sbjct:   53 GYVQFRDHSAFLVGVHIAPYEKTGEYDQHDPERPRQLLLHK 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168563.4271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LKD0_ECTSI3.050e-1575.61SsrA-binding protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S3EVW1_9EUKA3.590e-754.55Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
UPI001FB51A9E8.840e-763.41SsrA-binding protein SmpB n=1 Tax=Pseudodesulfovib... [more]
A0A126QKP6_9DELT1.340e-563.89SsrA-binding protein n=3 Tax=Pseudodesulfovibrio T... [more]
K9FEP1_9CYAN1.380e-551.11SsrA-binding protein n=8 Tax=Leptolyngbyaceae TaxI... [more]
UPI001E3C48B51.910e-557.14SsrA-binding protein SmpB n=1 Tax=Pseudodesulfovib... [more]
A0A3M1SUQ7_9BACT3.520e-552.63SsrA-binding protein n=1 Tax=Planctomycetes bacter... [more]
UPI0003B72AAA3.790e-556.10SsrA-binding protein SmpB n=1 Tax=Paucidesulfovibr... [more]
A0A1Z3HG83_9CYAN6.990e-548.84SsrA-binding protein n=1 Tax=Halomicronema hongdec... [more]
E6VQR5_PSEA97.160e-556.10SsrA-binding protein n=2 Tax=Pseudodesulfovibrio T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168563contigH-elongata_contig168563:1158..1295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog2880.D8LKD0
EggNOG free text desc.SmpB protein
EggNOG OGs2S5AD@2759,COG0691@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.8174102-CDS-H-elongata_contig168563:1157..12951622929984.8174102-CDS-H-elongata_contig168563:1157..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168563 1158..1295 +
1691679235.029346-CDS-H-elongata_contig168563:1157..12951691679235.029346-CDS-H-elongata_contig168563:1157..1295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168563 1158..1295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168563.4271.1prot_H-elongata_contig168563.4271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168563 1158..1295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168563.4271.1

>prot_H-elongata_contig168563.4271.1 ID=prot_H-elongata_contig168563.4271.1|Name=mRNA_H-elongata_contig168563.4271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
LYPGREQAKDGQCFLHGVHIAECASTNRYYQHQPTRPRRLLLHKV*
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mRNA from alignment at H-elongata_contig168563:1158..1295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168563.4271.1 ID=mRNA_H-elongata_contig168563.4271.1|Name=mRNA_H-elongata_contig168563.4271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig168563:1158..1295+ (Himanthalia elongata Himel1 dioecious)
CTGTATCCCGGTCGTGAGCAGGCAAAGGACGGCCAGTGCTTCCTGCACGG
CGTCCACATCGCGGAATGTGCCTCGACGAACCGTTATTACCAGCACCAGC
CGACCCGACCTCGGAGACTTCTTCTGCACAAGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig168563:1158..1295+

>mRNA_H-elongata_contig168563.4271.1 ID=mRNA_H-elongata_contig168563.4271.1|Name=mRNA_H-elongata_contig168563.4271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig168563:1158..1295+ (Himanthalia elongata Himel1 dioecious)
CTGTATCCCGGTCGTGAGCAGGCAAAGGACGGCCAGTGCTTCCTGCACGG
CGTCCACATCGCGGAATGTGCCTCGACGAACCGTTATTACCAGCACCAGC
CGACCCGACCTCGGAGACTTCTTCTGCACAAGGTATGACTGTATCCCGGT
CGTGAGCAGGCAAAGGACGGCCAGTGCTTCCTGCACGGCGTCCACATCGC
GGAATGTGCCTCGACGAACCGTTATTACCAGCACCAGCCGACCCGACCTC
GGAGACTTCTTCTGCACAAGGTATGA
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