mRNA_H-elongata_contig16852.4269.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 182 bits (461), Expect = 1.040e-55 Identity = 85/162 (52.47%), Postives = 113/162 (69.75%), Query Frame = 1
Query: 1 FDDYEHVASLINGTCTFNTFMCCWTKNN-GEGMEDNTDVCRYVDPSGVSLDFPGESEGSTHCHGFGWPDGSDYINHILPLYFFVRNFDHFQSRG-YYGNVEGAPECGCIESMPVVSRADCSTFSRGGLTACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDNA 480
+D+ VA L++GTC ++T+MCC+T ++ GEG+ NTDVC PS L+ PG+SEG +CHGF WP+G+D NHILPLY +V+N + G YYGNVEGAPECGCIE MP VS A+CS FS G+ C + L YN +L +P G+++ NLV +CDNA
Sbjct: 24 YDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV--PS-EGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDNA 182
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 183 bits (464), Expect = 2.460e-53 Identity = 85/162 (52.47%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 1 FDDYEHVASLINGTCTFNTFMCCWTKNNG-EGMEDNTDVCRYVD--PSGVSLDFPGESEGSTHCHGFGWPDGSDYINHILPLYFFVRNFDHFQSRGYYGNVEGAPECGCIESMPVVSRADCSTFSRGGLTACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDN 477
+D+ HVA L+ C +NT+MCCWT N+G +GM NTDVCR D G SL+FP +SEGS +CHGFGW DG+D +ILPLY V N + GYYGNVEGAP+CGC+E MPVVS ++CS F G+T C ++ L +Y +++ P G L+ NLV CDN
Sbjct: 98 YDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDN 259
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 183 bits (464), Expect = 7.750e-53 Identity = 82/162 (50.62%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 1 FDDYEHVASLINGTCTFNTFMCCWTKNNG-EGMEDNTDVCRYVD--PSGVSLDFPGESEGSTHCHGFGWPDGSDYINHILPLYFFVRNFDHFQSRGYYGNVEGAPECGCIESMPVVSRADCSTFSRGGLTACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDN 477
+D+ VA L++ TC ++T+MCCWT ++G +GM N+DVCR +D G S + P +SEGS +CHGF W +G+D HILPLY +V+N + G+YGNVEGAPECGCIE MP VS ++CS +S G+ C +N L Y +LG P G +D NLV TCDN
Sbjct: 150 YDEDVEVAKLLDSTCEWDTYMCCWTGSDGADGMTANSDVCRVLDYPEEGDSFEMPRDSEGSVYCHGFAWVEGADVDTHILPLYHYVKNVGRTEEGGFYGNVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRGRLGEPYGPMDDNLVRTCDN 311
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 180 bits (457), Expect = 1.130e-51 Identity = 91/166 (54.82%), Postives = 110/166 (66.27%), Query Frame = 1
Query: 7 DYEHVASLINGTCTFNTFMCCWTKNNGEGMEDNTDVCRYVD-PS-GVSLDFPGESEGSTHCHGFGWP-DGSDYINHILPLYFFVRNFDHFQSRGYYGNVEGAPECGCIESMPVVSRADCSTFSR-----GGLTACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDNA 480
D E V TC NT+MCCWT+N+G+GM DNTDVCR +D PS G + ++PGESEG HCHGF WP D +D H+L FV++FDH RGY+GN+EGAP CGCIE MP VS ADC+T+ G TAC +NDL Y + P G+LD NLVG CDNA
Sbjct: 324 DNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQ--FVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEY--PMGELD-NLVGECDNA 484
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 170 bits (430), Expect = 4.960e-51 Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 1
Query: 1 FDDYEHVASLINGTCTFNTFMCCWTKNN-GEGMEDNTDVCRYVDPSGVSLDFPGESEGSTHCHGFGWPDGSDYINHILPLYFFVRNFDHFQSRG-YYGNVEGAPECGCIESMPVVSRADCSTFSRGGLTACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDNA 480
+D+ VA L++ TC ++T+MCC+T ++ GEG+ NTDVC +EGS +CHGF WPDG+D NHILPLY +V+N + G YYG+VEGAPECGCIE MP VS A+CS F G+ C + L YN +LG+P G+++ NLV +CDNA
Sbjct: 31 YDEDLEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVP------------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDNA 180
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 178 bits (451), Expect = 3.080e-49 Identity = 90/165 (54.55%), Postives = 108/165 (65.45%), Query Frame = 1
Query: 7 DYEHVASLINGTCTFNTFMCCWTKNNGEGMEDNTDVCRYVD-PS-GVSLDFPGESEGSTHCHGFGWP-DGSDYINHILPLYFFVRNFDHFQSRGYYGNVEGAPECGCIESMPVVSRADCSTFSR-----GGLTACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDN 477
D E V TC NT+MCCWT+N+G+GM DNTDVCR +D PS G + ++PGESEG HCHGF WP D +D H+L FV++FDH RGY+GN+EGAP CGCIE MP VS ADC+T+ G TAC NDL Y + P G+LD NLVG CDN
Sbjct: 281 DNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQ--FVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEY--PMGELD-NLVGECDN 440
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 164 bits (416), Expect = 5.430e-46 Identity = 77/167 (46.11%), Postives = 105/167 (62.87%), Query Frame = 1
Query: 1 FDDYEHVASLINGTCTFNTFMCCWTKNNG-EGMEDNTDVCRYVD--PSGVSLDFPGESEGSTHCHGFGWPDGSDYINHILPLYFFVRNFDHFQSRGYY-----GNVEGAPECGCIESMPVVSRADCSTFSRGGLTACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDN 477
++++ VA L++ TC ++ +MCCWT N+G +GM N+DVCR +D G S + P ESEG CHGF W +G+D HILPLY +V+N + G+Y +VEG PECGCIE +P VS ++CS +S G+ C +N L Y LG P G +D NLV TCDN
Sbjct: 32 YEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDN 198
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 130 bits (328), Expect = 2.690e-35 Identity = 68/165 (41.21%), Postives = 92/165 (55.76%), Query Frame = 1
Query: 4 DDYEHVASLINGTCTFNTFMCCWTKNNGEGMEDNTDVCRYVDPSGVSLDFPGESEGSTHCHGFGWPDGS--DYINHILPLYFFVRNFDHFQSRGYYGNVEGAPECGCIESMPVVSRADCSTFSRGGLT-----ACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDN 477
D++E V + C +NT+MCCW NG ++DNTDVC Y +FPG+SEG HCHGF WP+ + D+I ++ F+ H + Y GN+ GAP C C+E MP VSRADC+ + + L AC+ NDL + Y +L G D LV CDN
Sbjct: 46 DEFELVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYR-----GEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFIN---HVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYK-ELYPTGRGRDL-LVKKCDN 200
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 132 bits (331), Expect = 5.010e-35 Identity = 68/165 (41.21%), Postives = 92/165 (55.76%), Query Frame = 1
Query: 4 DDYEHVASLINGTCTFNTFMCCWTKNNGEGMEDNTDVCRYVDPSGVSLDFPGESEGSTHCHGFGWPDGS--DYINHILPLYFFVRNFDHFQSRGYYGNVEGAPECGCIESMPVVSRADCSTFSRGGLT-----ACNDNDLNKHYNNKLGSPGGDLDFNLVGTCDN 477
D++E V + C +NT+MCCW NG ++DNTDVC Y +FPG+SEG HCHGF WP+ + D+I ++ F+ H + Y GN+ GAP C C+E MP VSRADC+ + + L AC+ NDL + Y +L G D LV CDN
Sbjct: 110 DEFERVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYR-----GEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFIN---HVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYK-ELYPTGRGRDL-LVKKCDN 264
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Match: A0A7S1VY93_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VY93_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.020e-22 Identity = 65/154 (42.21%), Postives = 76/154 (49.35%), Query Frame = 1
Query: 43 CTFNTFMCCWTK------NNGE------------GMEDNTDVCRYVDPS----------GVSLDFPGESEGSTHCHGFGWP-DGSD----YINHILPLYFFVRNFDHFQSRGYYGNVEGAPECGCIESMPVVSRADCSTFSRGGLTACNDNDLN 405
CT N MCCW + NNG DNTD+C YVD S G SL F GE EG +HCHGF W D SD + + L F+V +DH Q RGY NV GAP CGC+E M VV+RADC+ S + ND N
Sbjct: 112 CTLNAAMCCWVQDRQAGDNNGNCATPYDENCVDADPADNTDIC-YVDMSRAPASSRTSDGFSL-FEGEEEGDSHCHGFAWDKDPSDESALFKGNNL---FYVSFYDHLQQRGYVRNVPGAPMCGCVEQMAVVTRADCTEISTSETVEFSFNDQN 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16852.4269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16852.4269.1 >prot_H-elongata_contig16852.4269.1 ID=prot_H-elongata_contig16852.4269.1|Name=mRNA_H-elongata_contig16852.4269.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp FDDYEHVASLINGTCTFNTFMCCWTKNNGEGMEDNTDVCRYVDPSGVSLDback to top mRNA from alignment at H-elongata_contig16852:4096..6474- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16852.4269.1 ID=mRNA_H-elongata_contig16852.4269.1|Name=mRNA_H-elongata_contig16852.4269.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2379bp|location=Sequence derived from alignment at H-elongata_contig16852:4096..6474- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16852:4096..6474- >mRNA_H-elongata_contig16852.4269.1 ID=mRNA_H-elongata_contig16852.4269.1|Name=mRNA_H-elongata_contig16852.4269.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig16852:4096..6474- (Himanthalia elongata Himel1 dioecious)back to top |