mRNA_H-elongata_contig168496.4268.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168496.4268.1
Unique NamemRNA_H-elongata_contig168496.4268.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: A0A6H5K0V5_9PHAE (Carn_acyltransf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0V5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.330e-10
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGGL 126
            LP+P+LEETFARYL++++PLA   EY+ T  A+REFLRPGGL
Sbjct:   39 LPLPTLEETFARYLVSIEPLADEEEYKATATAAREFLRPGGL 80
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: A0A0L0SP92_ALLM3 (Carn_acyltransf domain-containing protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SP92_ALLM3)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGG 123
            LPVP+L+ET A+YLLTV+PL + A+Y RT AA REF +PGG
Sbjct:   95 LPVPTLDETLAKYLLTVRPLLSDADYARTEAAVREFAKPGG 135
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: U4L2R3_PYROM (Similar to Carnitine O-acetyltransferase, mitochondrial acc. no. Q00614 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4L2R3_PYROM)

HSP 1 Score: 56.2 bits (134), Expect = 4.750e-8
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGGL 126
            LPVP+LEET ARYL +V+P+ T AE+ +T AA  EF+RPGG+
Sbjct:   66 LPVPTLEETAARYLKSVEPITTPAEFAKTKAAVEEFVRPGGV 107
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: A0A1E3B5B5_9EURO (Carn_acyltransf domain-containing protein n=4 Tax=Aspergillus TaxID=5052 RepID=A0A1E3B5B5_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGG 123
            LPVPSLEET  RYL +V P+ T AEY+RT  A   F+RPGG
Sbjct:   65 LPVPSLEETAKRYLKSVHPIVTDAEYERTKKAVEAFIRPGG 105
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: A0A197KGM9_9FUNG (Acyltransferase ChoActase/COT/CPT n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KGM9_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGGL 126
            LPVP+LEET A+YL T++PL T+ E +R+   +++FL+PGGL
Sbjct:   14 LPVPTLEETIAKYLKTIEPLTTSEELERSKELAKDFLKPGGL 55
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: A0A225ALU6_9EURO (Carn_acyltransf domain-containing protein n=1 Tax=Talaromyces atroroseus TaxID=1441469 RepID=A0A225ALU6_9EURO)

HSP 1 Score: 53.5 bits (127), Expect = 4.250e-7
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGG 123
            LPVPSLEET  RYL +V PL +AAE++RT  A  +F++PGG
Sbjct:   34 LPVPSLEETGRRYLKSVHPLLSAAEFERTSKAVHDFIKPGG 74
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: A0A0J9XIN1_GEOCN (Similar to Saccharomyces cerevisiae YML042W CAT2 Carnitine acetyl-CoA transferase present in both mitochondria and peroxisomes n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XIN1_GEOCN)

HSP 1 Score: 53.5 bits (127), Expect = 4.250e-7
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGG 123
            LPVPSLEET A+YL +V PL T  E+ RT AA ++F+RPGG
Sbjct:   34 LPVPSLEETAAKYLRSVIPLVTPDEFARTEAAVKDFIRPGG 74
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: A0A2T3BC11_AMORE (Carn_acyltransf domain-containing protein n=1 Tax=Amorphotheca resinae ATCC 22711 TaxID=857342 RepID=A0A2T3BC11_AMORE)

HSP 1 Score: 53.5 bits (127), Expect = 4.250e-7
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGGL 126
            LPVP+LEET ARYL +V PL + +E+Q T  A +EF++PGG+
Sbjct:   37 LPVPTLEETAARYLKSVHPLVSPSEFQSTTEAVKEFIKPGGV 78
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: A0A5E8BUM9_9ASCO (Carn_acyltransf domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BUM9_9ASCO)

HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGG 123
            LPVP+LEET A+YL +V PL T  EY RT AA ++F++PGG
Sbjct:   56 LPVPTLEETAAKYLRSVVPLTTPDEYARTEAAVKDFIKPGG 96
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BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Match: G8Y0W5_PICSO (Piso0_004958 protein n=2 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) TaxID=559304 RepID=G8Y0W5_PICSO)

HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGG 123
            LPVP+L+ET ARYL +VQP  +A++Y++T A   EF+RPGG
Sbjct:   44 LPVPTLQETSARYLKSVQPYLSASQYEQTRAKVEEFIRPGG 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168496.4268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0V5_9PHAE2.330e-1066.67Carn_acyltransf domain-containing protein n=2 Tax=... [more]
A0A0L0SP92_ALLM31.360e-865.85Carn_acyltransf domain-containing protein n=1 Tax=... [more]
U4L2R3_PYROM4.750e-861.90Similar to Carnitine O-acetyltransferase, mitochon... [more]
A0A1E3B5B5_9EURO3.110e-763.41Carn_acyltransf domain-containing protein n=4 Tax=... [more]
A0A197KGM9_9FUNG3.110e-754.76Acyltransferase ChoActase/COT/CPT n=1 Tax=Linneman... [more]
A0A225ALU6_9EURO4.250e-760.98Carn_acyltransf domain-containing protein n=1 Tax=... [more]
A0A0J9XIN1_GEOCN4.250e-763.41Similar to Saccharomyces cerevisiae YML042W CAT2 C... [more]
A0A2T3BC11_AMORE4.250e-757.14Carn_acyltransf domain-containing protein n=1 Tax=... [more]
A0A5E8BUM9_9ASCO5.820e-760.98Carn_acyltransf domain-containing protein n=1 Tax=... [more]
G8Y0W5_PICSO5.820e-758.54Piso0_004958 protein n=2 Tax=Pichia sorbitophila (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168496contigH-elongata_contig168496:1051..1176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D8LEZ7
Preferred nameCAT2
KEGG rclassRC00004,RC00037
KEGG koko:K00624
KEGG ReactionR02396
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0003824,GO:0004092,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0006575,GO:0006577,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0009437,GO:0009987,GO:0016406,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0034641,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564
EggNOG free text desc.choline O-acetyltransferase activity
EggNOG OGsKOG3717@1,KOG3717@2759
EC2.3.1.7
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.6761496-CDS-H-elongata_contig168496:1050..11761622929984.6761496-CDS-H-elongata_contig168496:1050..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168496 1051..1176 +
1691679234.9590192-CDS-H-elongata_contig168496:1050..11761691679234.9590192-CDS-H-elongata_contig168496:1050..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168496 1051..1176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168496.4268.1prot_H-elongata_contig168496.4268.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168496 1051..1176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168496.4268.1

>prot_H-elongata_contig168496.4268.1 ID=prot_H-elongata_contig168496.4268.1|Name=mRNA_H-elongata_contig168496.4268.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
LPVPSLEETFARYLLTVQPLATAAEYQRTIAASREFLRPGGL
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mRNA from alignment at H-elongata_contig168496:1051..1176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168496.4268.1 ID=mRNA_H-elongata_contig168496.4268.1|Name=mRNA_H-elongata_contig168496.4268.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig168496:1051..1176+ (Himanthalia elongata Himel1 dioecious)
TTGCCGGTGCCTTCCTTGGAGGAAACATTCGCGAGATACCTTCTGACAGT
CCAGCCTCTGGCGACCGCGGCGGAGTATCAGCGGACGATTGCTGCTTCTC
GGGAGTTTCTACGCCCCGGAGGGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig168496:1051..1176+

>mRNA_H-elongata_contig168496.4268.1 ID=mRNA_H-elongata_contig168496.4268.1|Name=mRNA_H-elongata_contig168496.4268.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig168496:1051..1176+ (Himanthalia elongata Himel1 dioecious)
TTGCCGGTGCCTTCCTTGGAGGAAACATTCGCGAGATACCTTCTGACAGT
CCAGCCTCTGGCGACCGCGGCGGAGTATCAGCGGACGATTGCTGCTTCTC
GGGAGTTTCTACGCCCCGGAGGGTTGTTGCCGGTGCCTTCCTTGGAGGAA
ACATTCGCGAGATACCTTCTGACAGTCCAGCCTCTGGCGACCGCGGCGGA
GTATCAGCGGACGATTGCTGCTTCTCGGGAGTTTCTACGCCCCGGAGGGT
TG
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