mRNA_H-elongata_contig168425.4264.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168425.4264.1
Unique NamemRNA_H-elongata_contig168425.4264.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168425.4264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168425contigH-elongata_contig168425:255..1310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.366984-CDS-H-elongata_contig168425:255..4811622929984.366984-CDS-H-elongata_contig168425:255..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168425 256..481 -
1691679234.8458478-CDS-H-elongata_contig168425:255..4811691679234.8458478-CDS-H-elongata_contig168425:255..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168425 256..481 -
1622929984.3817308-CDS-H-elongata_contig168425:1287..13101622929984.3817308-CDS-H-elongata_contig168425:1287..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168425 1288..1310 -
1691679234.8673007-CDS-H-elongata_contig168425:1287..13101691679234.8673007-CDS-H-elongata_contig168425:1287..1310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168425 1288..1310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168425.4264.1prot_H-elongata_contig168425.4264.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168425 256..1310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168425.4264.1

>prot_H-elongata_contig168425.4264.1 ID=prot_H-elongata_contig168425.4264.1|Name=mRNA_H-elongata_contig168425.4264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
ESSPLSARPTPYLPEESQMLSSGQVVIQANAPSRAALSGLSTSQLHLSTP
STCQTVPPSTSRSRGPRDRSEPSQLLPHHPVKR
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mRNA from alignment at H-elongata_contig168425:255..1310-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168425.4264.1 ID=mRNA_H-elongata_contig168425.4264.1|Name=mRNA_H-elongata_contig168425.4264.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1056bp|location=Sequence derived from alignment at H-elongata_contig168425:255..1310- (Himanthalia elongata Himel1 dioecious)
GAATCATCACCGCTCTCGGCCAGGTCAGCCACCGTAGTTATCCATCAACG
CTAGACTTTGTCGTAGTCTAGCATGCAATCCCGTGGGGGGTGTATCTTAT
TGTGATTAATTATATAACGAGGCGGTGTAGGAGCCGTGATTAGATCCATC
CGTGTGCCCAATGAATCGTTTTACTATGCCCCAAATCATGAGATATATAA
TACTTTAACTGCCTCCACTGGCGCTAGACGTGAACCGGGGAGAGATAACC
TATTTTTTAGAATAACAGGCACGATGGGCAACGGTACAGCAGGGGGTATC
GGTAACCTAGCATACAGAGTGGTATTATACTGTATACACTATACCCCATT
GGCAGAAAGAAGGGCGATACAAAAGATAATGCTTGGGTGTATATTGGTTT
CAATCACTTCTTGTTCACAATCTTTGTCTTCGGCGTTATATTGTGTGCGG
CTCGGTCTCCGTTACTGTATCCATGTGTGCATTTCTTTGCACCTCTAAAG
GGATTATTAGTCTAGTGTTTTGGGGTGCTTAACCCTAGGATGAATCTGAC
GGCCGATTTTACGCCGCCAAACAACTGCAATATTACGTTTTCTAATTGCG
GTATTTCTTCATTAACATATGTGTTTATGCCGACTTCAACCCAAGGCGGT
GATGTTTTAGACATTTTATGCCATATAACAGATCATACTCTCCTGCTTGA
AGAACTTATCCCCCCAACATGTCCCCCCAACACATGATATGCTATCTGTG
ATACACATTAGTAAGACAAATGATTCCGTCAAACATTCACATAATAATGC
GTTCCTGATGCCCGGCGCTTCTTTTGTAGGCCGACGCCGTACCTACCAGA
GGAGTCACAGATGCTCAGCTCGGGTCAGGTGGTCATTCAAGCAAACGCAC
CCTCCAGAGCAGCACTATCCGGTCTTTCGACATCACAGTTACATTTATCA
ACTCCATCAACATGCCAAACGGTACCTCCTTCGACATCACGTTCGAGGGG
TCCTCGGGACCGGTCGGAACCTTCACAGTTATTGCCCCACCATCCGGTCA
AACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig168425:255..1310-

>mRNA_H-elongata_contig168425.4264.1 ID=mRNA_H-elongata_contig168425.4264.1|Name=mRNA_H-elongata_contig168425.4264.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig168425:255..1310- (Himanthalia elongata Himel1 dioecious)
GAATCATCACCGCTCTCGGCCAGGAATCATCACCGCTCTCGGCCAGGCCG
ACGCCGTACCTACCAGAGGAGTCACAGATGCTCAGCTCGGGTCAGGTGGT
CATTCAAGCAAACGCACCCTCCAGAGCAGCACTATCCGGTCTTTCGACAT
CACAGTTACATTTATCAACTCCATCAACATGCCAAACGGTACCTCCTTCG
ACATCACGTTCGAGGGGTCCTCGGGACCGGTCGGAACCTTCACAGTTATT
GCCCCACCATCCGGTCAAACGGGCCGACGCCGTACCTACCAGAGGAGTCA
CAGATGCTCAGCTCGGGTCAGGTGGTCATTCAAGCAAACGCACCCTCCAG
AGCAGCACTATCCGGTCTTTCGACATCACAGTTACATTTATCAACTCCAT
CAACATGCCAAACGGTACCTCCTTCGACATCACGTTCGAGGGGTCCTCGG
GACCGGTCGGAACCTTCACAGTTATTGCCCCACCATCCGGTCAAACGG
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