mRNA_H-elongata_contig168206.4255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168206.4255.1
Unique NamemRNA_H-elongata_contig168206.4255.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168206.4255.1 vs. uniprot
Match: D8LQ04_ECTSI (USP7_ICP0_bdg domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ04_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 6.890e-52
Identity = 85/109 (77.98%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 GFVRMSVKIMDVREAYFRVATDTDLARNITGQSGGGDFADWRTCLPAKAFKHDQLLYVIQKVAELTGVPLVSCRPWLCLPHAG-----GAIRPVAALLPQHLPMTICEV 312
            GFVR+SVKI+DVREAYFRVATD DLAR++TG+ GGGDFADWRTCLPAK+FKHDQLLYVIQKV+ELTGVPLVSCRPWLC+P        G +RP AALLPQHL M+ICE+
Sbjct:   12 GFVRISVKIIDVREAYFRVATDVDLARSVTGRGGGGDFADWRTCLPAKSFKHDQLLYVIQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEI 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168206.4255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ04_ECTSI6.890e-5277.98USP7_ICP0_bdg domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168206contigH-elongata_contig168206:651..1294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionICP0-binding domain of Ubiquitin-specific protease 7
Ec32 orthologEc-15_001430.1
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168206.4255.1prot_H-elongata_contig168206.4255.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168206 663..1294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.306839-UTR-H-elongata_contig168206:650..6621622929983.306839-UTR-H-elongata_contig168206:650..662Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig168206 651..662 +
1691679234.4066076-UTR-H-elongata_contig168206:650..6621691679234.4066076-UTR-H-elongata_contig168206:650..662Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig168206 651..662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.3259258-CDS-H-elongata_contig168206:662..8241622929983.3259258-CDS-H-elongata_contig168206:662..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168206 663..824 +
1691679234.4175227-CDS-H-elongata_contig168206:662..8241691679234.4175227-CDS-H-elongata_contig168206:662..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168206 663..824 +
1622929983.3445368-CDS-H-elongata_contig168206:1156..12941622929983.3445368-CDS-H-elongata_contig168206:1156..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168206 1157..1294 +
1691679234.425928-CDS-H-elongata_contig168206:1156..12941691679234.425928-CDS-H-elongata_contig168206:1156..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168206 1157..1294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168206.4255.1

>prot_H-elongata_contig168206.4255.1 ID=prot_H-elongata_contig168206.4255.1|Name=mRNA_H-elongata_contig168206.4255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MSVKIMDVREAYFRVATDTDLARNITGQSGGGDFADWRTCLPAKAFKHDQ
LLYVIQKVAELTGVPLVSCRPWLCLPHAGGAIRPVAALLPQHLPMTICEV
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mRNA from alignment at H-elongata_contig168206:651..1294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168206.4255.1 ID=mRNA_H-elongata_contig168206.4255.1|Name=mRNA_H-elongata_contig168206.4255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=644bp|location=Sequence derived from alignment at H-elongata_contig168206:651..1294+ (Himanthalia elongata Himel1 dioecious)
GGTTTTGTCCGCATGAGCGTGAAAATCATGGACGTTCGGGAGGCGTATTT
TAGAGTGGCAACTGACACCGACCTCGCCCGCAACATTACCGGACAATCCG
GGGGAGGCGACTTCGCAGACTGGCGCACGTGCCTGCCCGCCAAGGCTTTC
AAGCACGATCAGCTGCTCTACGTGGTGCGTGGTCACGTCGAGGATCCGCT
CAGTCGAGGGAGATGAGATGATCGGGAAGGATTCTTACCATTATTGTAGT
TTAAAAAACAAACAAACATGAAGTCATCCCGACCCTCCGAACATCCATAT
CCACACCGCCGTGGGAGGTGAAATTCAGGGGGCCAACTATCGTTAGGTTC
AAATGTGGACATTATTACTACCTTTGAGCACAAATGTATTTACACTTAAA
CACACAAACGTCCTTGGATCACCCCTTAAAAAAAGCGCGCCCCTTCTCCA
TGAAACCCCCTAGCCGACCCACGACCAAACAACTTAAATCACAACCGTCG
TCGCAGATCCAGAAGGTGGCCGAGCTCACGGGCGTGCCTCTAGTCAGTTG
CCGGCCGTGGTTATGCTTGCCTCATGCTGGAGGCGCCATTCGTCCGGTGG
CGGCTCTATTGCCACAACACCTTCCGATGACCATCTGCGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig168206:651..1294+

>mRNA_H-elongata_contig168206.4255.1 ID=mRNA_H-elongata_contig168206.4255.1|Name=mRNA_H-elongata_contig168206.4255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig168206:651..1294+ (Himanthalia elongata Himel1 dioecious)
ATGAGCGTGAAAATCATGGACGTTCGGGAGGCGTATTTTAGAGTGGCAAC
TGACACCGACCTCGCCCGCAACATTACCGGACAATCCGGGGGAGGCGACT
TCGCAGACTGGCGCACGTGCCTGCCCGCCAAGGCTTTCAAGCACGATCAG
CTGCTCTACGTGATGAGCGTGAAAATCATGGACGTTCGGGAGGCGTATTT
TAGAGTGGCAACTGACACCGACCTCGCCCGCAACATTACCGGACAATCCG
GGGGAGGCGACTTCGCAGACTGGCGCACGTGCCTGCCCGCCAAGGCTTTC
AAGCACGATCAGCTGCTCTACGTGATCCAGAAGGTGGCCGAGCTCACGGG
CGTGCCTCTAGTCAGTTGCCGGCCGTGGTTATGCTTGCCTCATGCTGGAG
GCGCCATTCGTCCGGTGGCGGCTCTATTGCCACAACACCTTCCGATGACC
ATCTGCGAGGTGATCCAGAAGGTGGCCGAGCTCACGGGCGTGCCTCTAGT
CAGTTGCCGGCCGTGGTTATGCTTGCCTCATGCTGGAGGCGCCATTCGTC
CGGTGGCGGCTCTATTGCCACAACACCTTCCGATGACCATCTGCGAGGTG
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