mRNA_H-elongata_contig16799.4241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16799.4241.1
Unique NamemRNA_H-elongata_contig16799.4241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16799.4241.1 vs. uniprot
Match: A0A4Q5MAS5_9GAMM (Transcriptional regulator n=2 Tax=Shewanellaceae TaxID=267890 RepID=A0A4Q5MAS5_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 1.050e-5
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 QVVVVSEKFEGKSLVTRHRMVNELFAAEMRSSSVHGENVHPY 135
            +VV+VS+ F+GK L+ RHRMVNE+ A E+ +S +H  ++H Y
Sbjct:   46 KVVIVSDSFDGKRLIARHRMVNEVLADELENS-IHALSIHTY 86
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BLAST of mRNA_H-elongata_contig16799.4241.1 vs. uniprot
Match: UPI00200CE2B0 (BolA family transcriptional regulator n=2 Tax=Shewanella TaxID=22 RepID=UPI00200CE2B0)

HSP 1 Score: 46.2 bits (108), Expect = 3.740e-5
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   10 QVVVVSEKFEGKSLVTRHRMVNELFAAEMRSSSVHGENVHPY 135
            +VVVVS +FEGK L+ RHR+VNEL A E+ ++ VH   +H Y
Sbjct:   40 KVVVVSGEFEGKRLIARHRLVNELLADEL-AAGVHALTMHTY 80
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BLAST of mRNA_H-elongata_contig16799.4241.1 vs. uniprot
Match: UPI001FE9B202 (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Parashewanella tropica TaxID=2547970 RepID=UPI001FE9B202)

HSP 1 Score: 45.4 bits (106), Expect = 9.210e-5
Identity = 20/42 (47.62%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 QVVVVSEKFEGKSLVTRHRMVNELFAAEMRSSSVHGENVHPY 135
            +VVVVS++F+GK L+ RHR+VN++ A E+ S  +H  ++H Y
Sbjct:   51 KVVVVSDEFDGKRLIGRHRLVNQVLAEELESE-IHALSIHTY 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16799.4241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4Q5MAS5_9GAMM1.050e-550.00Transcriptional regulator n=2 Tax=Shewanellaceae T... [more]
UPI00200CE2B03.740e-554.76BolA family transcriptional regulator n=2 Tax=Shew... [more]
UPI001FE9B2029.210e-547.62BolA/IbaG family iron-sulfur metabolism protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16799contigH-elongata_contig16799:1661..1795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.844685-CDS-H-elongata_contig16799:1660..17951622929981.844685-CDS-H-elongata_contig16799:1660..1795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 1661..1795 +
1691679233.8361285-CDS-H-elongata_contig16799:1660..17951691679233.8361285-CDS-H-elongata_contig16799:1660..1795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16799 1661..1795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16799.4241.1prot_H-elongata_contig16799.4241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16799 1661..1795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16799.4241.1

>prot_H-elongata_contig16799.4241.1 ID=prot_H-elongata_contig16799.4241.1|Name=mRNA_H-elongata_contig16799.4241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
DGQQVVVVSEKFEGKSLVTRHRMVNELFAAEMRSSSVHGENVHPY
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mRNA from alignment at H-elongata_contig16799:1661..1795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16799.4241.1 ID=mRNA_H-elongata_contig16799.4241.1|Name=mRNA_H-elongata_contig16799.4241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig16799:1661..1795+ (Himanthalia elongata Himel1 dioecious)
GACGGCCAGCAGGTGGTAGTCGTGTCGGAGAAGTTCGAGGGGAAATCTCT
AGTGACCCGGCACCGCATGGTCAATGAGCTGTTTGCCGCGGAGATGAGGA
GCAGCTCCGTGCACGGTGAGAACGTCCATCCGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig16799:1661..1795+

>mRNA_H-elongata_contig16799.4241.1 ID=mRNA_H-elongata_contig16799.4241.1|Name=mRNA_H-elongata_contig16799.4241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig16799:1661..1795+ (Himanthalia elongata Himel1 dioecious)
GACGGCCAGCAGGTGGTAGTCGTGTCGGAGAAGTTCGAGGGGAAATCTCT
AGTGACCCGGCACCGCATGGTCAATGAGCTGTTTGCCGCGGAGATGAGGA
GCAGCTCCGTGCACGGTGAGAACGTCCATCCGTACGACGGCCAGCAGGTG
GTAGTCGTGTCGGAGAAGTTCGAGGGGAAATCTCTAGTGACCCGGCACCG
CATGGTCAATGAGCTGTTTGCCGCGGAGATGAGGAGCAGCTCCGTGCACG
GTGAGAACGTCCATCCGTAC
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