mRNA_H-elongata_contig1679.4234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1679.4234.1
Unique NamemRNA_H-elongata_contig1679.4234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: F6GWB2_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=F6GWB2_VITVI)

HSP 1 Score: 79.0 bits (193), Expect = 1.530e-17
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 VARRRTFMWGCLLVVGSGLFFVTSIYAIVFSKLMPPTGHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRH 234
            VA +    WG + ++   +FF+  +YA V SKL+PP+G++++ AI++D +YC+LVPL I     A+Y  W+S+K+F+H
Sbjct:   10 VASKDRVFWGWIFLIFGSIFFLGFLYAAVISKLLPPSGNVIISAIQKDRYYCFLVPLTIPILIVAVYFHWLSMKLFKH 87          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: W4FKI4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4FKI4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.160e-17
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   22 MWGCLLVVGSGLFFVTSIYAIVFSKLMPPT----GHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRHN 237
            +WG ++V  S +FF+T +Y IV +K++PP        ++DAIR D HYCYLVPL I  +  A+Y+SWVSLK FR N
Sbjct:   14 IWGYVIVSLSAIFFITFMYLIVVAKVLPPPTPGRSFPMMDAIRGDQHYCYLVPLTIPVAFIAMYVSWVSLKYFRQN 89          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: A0A8J4PUN0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PUN0_9MYCE)

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-16
Identity = 33/75 (44.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   13 RTFMWGCLLVVGSGLFFVTSIYAIVFSKLMPPTGHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRHN 237
            RT  +G +++  + +FF++S Y + FSKL+P TG+ +LD I+ D++YC+LVP++I  +   +Y +W+SLK FRHN
Sbjct:  175 RTAFYGWIILFCTFIFFISSTYCLFFSKLLPDTGNKVLDFIKYDWYYCFLVPVLIPVTIITVYFNWLSLKFFRHN 249          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: A0A1Y2GU76_9FUNG (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-domain-containing protein n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A1Y2GU76_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 1.190e-15
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   16 TFMWGCLLVVGSGLFFVTSIYAIVFSKLMPPTGHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRHN 237
            T++WG LL   + + F TS+YA+V S  MP TG+  LD I++D HYC L+P+ I  +  A+  +W+ +K+FRHN
Sbjct:   48 TYLWGYLLFFSTMIGFTTSMYALVASNYMPMTGNKTLDWIKQDSHYCMLLPVTIPVTVLAVLFNWLGMKLFRHN 121          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: A0A067BPD6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BPD6_SAPPC)

HSP 1 Score: 74.3 bits (181), Expect = 1.360e-15
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   22 MWGCLLVVGSGLFFVTSIYAIVFSKLMPPTGHI----LLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRHN 237
            +WG ++V  S  FF+T +Y IV +KL+PP+       +++ IR+D  YCYL+PL I     A+Y++WVSLK FRHN
Sbjct:   24 IWGYVIVGLSFAFFMTFLYLIVVAKLLPPSDDPARFPMMETIRQDHFYCYLIPLTIPAGFIAMYINWVSLKYFRHN 99          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: A0A482SEM9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEM9_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 1.030e-14
Identity = 31/70 (44.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   28 GCLLVVGSGLFFVTSIYAIVFSKLMPPTGHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRHN 237
            G +L+V S L  V S+Y I+ SKLMP TG + LD +++D ++CYL+PL+I P+ + +YL+W+++  F+ N
Sbjct:   41 GLVLIVLSVLVLVISLYTILISKLMPYTGIVALDFVKDDEYFCYLLPLLILPTFSVVYLNWLAMNHFQQN 110          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: A0A6A4ZJ79_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZJ79_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.210e-14
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   22 MWGCLLVVGSGLFFVTSI-----------YAIVFSKLMPPT----GHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRHN 237
            +WG ++V  S +FF+T +           Y IV +K++PP        ++DAIR D HYCYLVPL I  +  A+Y+SWVSLK FR N
Sbjct:   14 IWGYVIVSLSAIFFITFMQVHLSSDVVIEYLIVVAKVLPPPTPGRSFPMMDAIRGDQHYCYLVPLTIPVAFIAMYVSWVSLKYFRQN 100          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: A0A1Y3MPZ7_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MPZ7_PIRSE)

HSP 1 Score: 68.9 bits (167), Expect = 1.030e-13
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   16 TFMWGCLLVVGSGLFFVTSIYAIVFSKLMPPTGHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRHN 237
            T M G +L+  +   FV  +Y++VFS+ M  TG+ +LD I+ D +YCYL+PL+I      ++++W S+K FRHN
Sbjct:    4 THMAGWVLLFITYCVFVMGMYSVVFSRFMADTGNPVLDGIKNDNYYCYLIPLLIVIIYLFIFVNWFSMKFFRHN 77          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: A0A2P6NM70_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NM70_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 1.180e-13
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   58 FFVTSIYAIVFSKLMPPTGHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRH 234
            FF  S++ I  SK++P TG+ LLD IRED HYCYL+PL +  +    + +W+++K FRH
Sbjct:   37 FFGASVFTIYISKVLPETGNPLLDTIREDHHYCYLIPLSLMTTYLFFFNNWLAMKFFRH 95          
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Match: A0A022PQH2_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022PQH2_ERYGU)

HSP 1 Score: 68.2 bits (165), Expect = 2.610e-13
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   25 WGCLLVVGSGLFFVTSIYAIVFSKLMPPTGHILLDAIREDFHYCYLVPLMIYPSCTALYLSWVSLKIFRH 234
            WG   ++     FV  +YA V SKL+PP+ + ++ AI+ D++YC+LVPL +     A+Y  W+S+K+F+H
Sbjct:   16 WGWFFLIFGSFSFVFFLYAAVVSKLLPPSDNSVIQAIQNDWYYCFLVPLTLPILFVAVYFHWLSMKLFKH 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1679.4234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6GWB2_VITVI1.530e-1741.03Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
W4FKI4_9STRA3.160e-1750.00Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A8J4PUN0_9MYCE2.600e-1644.00Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A1Y2GU76_9FUNG1.190e-1544.59Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A067BPD6_SAPPC1.360e-1546.05Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A482SEM9_9ARCH1.030e-1444.29Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6A4ZJ79_9STRA9.210e-1443.68Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1Y3MPZ7_PIRSE1.030e-1341.89Uncharacterized protein (Fragment) n=1 Tax=Piromyc... [more]
A0A2P6NM70_9EUKA1.180e-1347.46Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A022PQH2_ERYGU2.610e-1340.00Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1679contigH-elongata_contig1679:10486..11251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.3
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog29760.VIT_06s0061g00160.t01
KEGG koko:K11001
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
EggNOG free text desc.Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
EggNOG OGs2CZD8@1,2S9T7@2759,37WNX@33090,3GKY5@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPhosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Ec32 orthologEc-04_005970.1
Exons2
Model size240
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1679.4234.1prot_H-elongata_contig1679.4234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1679 10507..11251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.02855-UTR-H-elongata_contig1679:10485..105061622929981.02855-UTR-H-elongata_contig1679:10485..10506Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1679 10486..10506 +
1691679233.4307628-UTR-H-elongata_contig1679:10485..105061691679233.4307628-UTR-H-elongata_contig1679:10485..10506Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1679 10486..10506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.0463047-CDS-H-elongata_contig1679:10506..105591622929981.0463047-CDS-H-elongata_contig1679:10506..10559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1679 10507..10559 +
1691679233.4431472-CDS-H-elongata_contig1679:10506..105591691679233.4431472-CDS-H-elongata_contig1679:10506..10559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1679 10507..10559 +
1622929981.0634508-CDS-H-elongata_contig1679:11085..112511622929981.0634508-CDS-H-elongata_contig1679:11085..11251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1679 11086..11251 +
1691679233.451915-CDS-H-elongata_contig1679:11085..112511691679233.451915-CDS-H-elongata_contig1679:11085..11251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1679 11086..11251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1679.4234.1

>prot_H-elongata_contig1679.4234.1 ID=prot_H-elongata_contig1679.4234.1|Name=mRNA_H-elongata_contig1679.4234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MWGCLLVVGSGLFFVTSIYAIVFSKLMPPTGHILLDAIREDFHYCYLVPL
MIYPSCTALYLSWVSLKIFRHN*
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mRNA from alignment at H-elongata_contig1679:10486..11251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1679.4234.1 ID=mRNA_H-elongata_contig1679.4234.1|Name=mRNA_H-elongata_contig1679.4234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=766bp|location=Sequence derived from alignment at H-elongata_contig1679:10486..11251+ (Himanthalia elongata Himel1 dioecious)
GTAGCACGTCGCCGAACGTTCATGTGGGGATGCTTGCTTGTCGTAGGAAG CGGTCTCTTCTTCGTTACTTCAATGTGAGCTCGTCTGCCTAGAATGGTAC AGTGTTGGATGTGTGTAGATCATGGGGAAAACGATTCCACCTTACGGTAA GCGAATAAAGTACATATTCGTGTCTTTTTTTTGTGTAGCCGAATGAGCAT TTCGCTAGGTGAAAGATTGGCCCTCGGTCTCCATTTTGAAGAGTGGTCGT ATTATTAATAGTGGCGATTGTGTTGTGTGCCCACTGAAAGCTAACATACT AAACACTACCGAGATGTAGGTCGTATCTCCATGTATCCTCGCCTTGGCGT GTCTTAGTCTGGAACGCTTTCCAGATGACGATAAGATTGGAAATTTGGGC ATCACATTTATTCACATATTTCTCTGAACGTTTCCAAAGTCATTACATTC TTGTCCTGTGTCACGATACGTCTTATTGATAGATTGGACTCATCAATCTC ACATCAAAATATCGTATGTGATGACCACATTGTCCTTGAAAACCGAACGT TCACAATCCAAACCGCTGTCCCTGCCTTTCCGCGACATGGTGACGCACAG ATACGCCATCGTGTTCTCCAAGCTGATGCCCCCCACAGGTCATATACTCC TTGATGCGATACGCGAAGACTTCCACTACTGTTACCTCGTGCCGCTGATG ATATACCCATCATGTACAGCGCTGTACTTGAGCTGGGTCAGCCTCAAGAT CTTTCGACATAATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1679:10486..11251+

>mRNA_H-elongata_contig1679.4234.1 ID=mRNA_H-elongata_contig1679.4234.1|Name=mRNA_H-elongata_contig1679.4234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig1679:10486..11251+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGGATGCTTGCTTGTCGTAGGAAGCGGTCTCTTCTTCGTTACTTC
AATATGTGGGGATGCTTGCTTGTCGTAGGAAGCGGTCTCTTCTTCGTTAC
TTCAATATACGCCATCGTGTTCTCCAAGCTGATGCCCCCCACAGGTCATA
TACTCCTTGATGCGATACGCGAAGACTTCCACTACTGTTACCTCGTGCCG
CTGATGATATACCCATCATGTACAGCGCTGTACTTGAGCTGGGTCAGCCT
CAAGATCTTTCGACATAATTGAATACGCCATCGTGTTCTCCAAGCTGATG
CCCCCCACAGGTCATATACTCCTTGATGCGATACGCGAAGACTTCCACTA
CTGTTACCTCGTGCCGCTGATGATATACCCATCATGTACAGCGCTGTACT
TGAGCTGGGTCAGCCTCAAGATCTTTCGACATAATTGA
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