mRNA_H-elongata_contig167889.4233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167889.4233.1
Unique NamemRNA_H-elongata_contig167889.4233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: D8LB49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB49_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.260e-29
Identity = 63/107 (58.88%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:    1 PLYYTFISFEMRV-----CVQVGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL--------------EPVLFATTIADNIAYGSDGATREEV 264
            P    F SF+++V        VG SG+GKSTVINLLLRFYDPE G +L+DG DIR+ N+ WLRGQIGL              EPVLFAT+IADNIAYG +GATREEV
Sbjct: 1130 PNALVFRSFKLKVDAGTTVALVGASGNGKSTVINLLLRFYDPERGAILIDGMDIRSFNVAWLRGQIGLVSQARPYTHILEQEEPVLFATSIADNIAYGCEGATREEV 1236
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: A0A7S0QH60_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QH60_9CRYP)

HSP 1 Score: 102 bits (254), Expect = 2.800e-26
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:   55 TSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEVRAS 273
            +SGSGKSTVI LLLRFYDP+ G + +DG D+R LN+ WLR Q+GL   EPVLF+ +IADN+ YG DGAT+EE+ A+
Sbjct:    1 SSGSGKSTVIQLLLRFYDPQEGAIRLDGRDLRELNVAWLRTQMGLVSQEPVLFSASIADNVRYGKDGATQEEIEAA 76
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: A0A7J8QBY7_GOSRA (ABC transmembrane type-1 domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8QBY7_GOSRA)

HSP 1 Score: 108 bits (270), Expect = 3.260e-26
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    1 PLYYTFISFEMRV-----CVQVGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEVRAS 273
            P    F  F + V        VG SGSGKSTVI+LL RFYDP+ G VL+DG D+R L L W+RG+IGL   EP+LFATTI +NIAYG D AT EE++A+
Sbjct:  270 PDVQIFAGFSLHVPSGTTVALVGQSGSGKSTVISLLERFYDPDSGQVLIDGVDLRELQLQWIRGKIGLVSQEPILFATTIRENIAYGKDNATNEEIKAA 368
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: A0A7J9HQ77_9ROSI (Uncharacterized protein n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9HQ77_9ROSI)

HSP 1 Score: 109 bits (273), Expect = 5.750e-26
Identity = 57/99 (57.58%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    1 PLYYTFISFEMRV-----CVQVGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEVRAS 273
            P    F  F + V        VG SGSGKSTVI+LL RFYDP+ G VL+DG D+R L L W+RG+IGL   EP+LFATTI +NIAYG D AT EE+RA+
Sbjct:  394 PDVQIFAGFSLHVPSGTTVALVGQSGSGKSTVISLLERFYDPDSGQVLIDGVDLRELQLQWIRGKIGLVSQEPILFATTIRENIAYGKDNATNEEIRAA 492
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: A7S211_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S211_NEMVE)

HSP 1 Score: 100 bits (249), Expect = 8.890e-26
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   49 VGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEV 264
            VG SG GKSTVI L+ RFYDPE G V +DG+DIR+LNL WLR +IG+   EP LFATTIA+NI YG DG T+ E+
Sbjct:    2 VGESGCGKSTVIKLIQRFYDPENGSVCLDGTDIRSLNLHWLRQRIGVVSQEPALFATTIAENIRYGQDGVTQAEI 76
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: A0A7S0QIY5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QIY5_9CRYP)

HSP 1 Score: 102 bits (254), Expect = 8.940e-26
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:   55 TSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEVRAS 273
            +SGSGKSTVI LLLRFYDP+ G + +DG D+R LN+ WLR Q+GL   EPVLF+ +IADN+ YG DGAT+EE+ A+
Sbjct:    1 SSGSGKSTVIQLLLRFYDPQEGAIRLDGRDLRELNVAWLRTQMGLVSQEPVLFSASIADNVRYGKDGATQEEIEAA 76
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: A0A6A3C248_HIBSY (ABC transporter B family member 5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C248_HIBSY)

HSP 1 Score: 106 bits (265), Expect = 2.080e-25
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 PLYYTFISFEMRV-----CVQVGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEVR 267
            P    F  F + V        VG SGSGKSTVI+LL RFYDPE G VL+DG D++ + L W+RG+IGL   EP+LFATTI +NIAYG D AT EE++
Sbjct:  174 PDVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLLERFYDPESGEVLIDGVDLKKIQLQWIRGKIGLVSQEPILFATTIRENIAYGKDNATHEEIK 270
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: A0A1U8L9T5_GOSHI (LOW QUALITY PROTEIN: ABC transporter B family member 9-like n=23 Tax=Gossypium TaxID=3633 RepID=A0A1U8L9T5_GOSHI)

HSP 1 Score: 107 bits (266), Expect = 5.150e-25
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    1 PLYYTFISFEMRV-----CVQVGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEVRAS 273
            P    F  F + V        VG SGSGKSTVI+LL RFYDP+ G VL+DG D+R L   W+RG+IGL   EP+LFATTI +NIAYG D AT EE+RA+
Sbjct:  394 PDVQIFAGFSLHVPSGTTVALVGQSGSGKSTVISLLERFYDPDSGQVLIDGVDLRELQPQWIRGKIGLVSQEPILFATTIRENIAYGKDNATNEEIRAA 492
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: UPI001922CF5C (LOW QUALITY PROTEIN: ABC transporter B family member 9-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001922CF5C)

HSP 1 Score: 106 bits (265), Expect = 7.030e-25
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 PLYYTFISFEMRV-----CVQVGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEVR 267
            P    F  F + V        VG SGSGKSTVI+LL RFYDPE G VL+DG D++ + L W+RG+IGL   EP+LFATTI +NIAYG D AT EE++
Sbjct:  394 PDVQIFAGFSLHVPSGTTAALVGQSGSGKSTVISLLERFYDPESGEVLIDGVDLKKIQLQWIRGKIGLVSQEPILFATTIRENIAYGKDNATHEEIK 490
[Close]
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Match: A0A6D2IDR5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IDR5_9BRAS)

HSP 1 Score: 105 bits (262), Expect = 1.770e-24
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 PLYYTFISFEMRV-----CVQVGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQIGL---EPVLFATTIADNIAYGSDGATREEVRAS 273
            P  + F  F + V        VG SGSGKSTVINL+ RFYDPE G VL+DG+D++ L L W+R +IGL   EP+LFATTI +NI+YG + AT +E+RA+
Sbjct:  333 PDVHVFAGFSLVVRSGTTVALVGKSGSGKSTVINLIERFYDPESGTVLIDGTDLKKLQLRWIRSKIGLVNQEPILFATTIRENISYGKEDATEQEIRAA 431
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167889.4233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB49_ECTSI6.260e-2958.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0QH60_9CRYP2.800e-2663.16Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7J8QBY7_GOSRA3.260e-2656.57ABC transmembrane type-1 domain-containing protein... [more]
A0A7J9HQ77_9ROSI5.750e-2657.58Uncharacterized protein n=1 Tax=Gossypium harkness... [more]
A7S211_NEMVE8.890e-2665.33Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A7S0QIY5_9CRYP8.940e-2663.16Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A6A3C248_HIBSY2.080e-2555.67ABC transporter B family member 5 n=1 Tax=Hibiscus... [more]
A0A1U8L9T5_GOSHI5.150e-2556.57LOW QUALITY PROTEIN: ABC transporter B family memb... [more]
UPI001922CF5C7.030e-2555.67LOW QUALITY PROTEIN: ABC transporter B family memb... [more]
A0A6D2IDR5_9BRAS1.770e-2453.54Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167889contigH-elongata_contig167889:466..1239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D8LB49
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167889.4233.1prot_H-elongata_contig167889.4233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167889 496..1239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929980.963509-UTR-H-elongata_contig167889:465..4951622929980.963509-UTR-H-elongata_contig167889:465..495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167889 466..495 +
1691679233.3967106-UTR-H-elongata_contig167889:465..4951691679233.3967106-UTR-H-elongata_contig167889:465..495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167889 466..495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929980.974477-CDS-H-elongata_contig167889:495..6541622929980.974477-CDS-H-elongata_contig167889:495..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167889 496..654 +
1691679233.4082334-CDS-H-elongata_contig167889:495..6541691679233.4082334-CDS-H-elongata_contig167889:495..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167889 496..654 +
1622929980.9890118-CDS-H-elongata_contig167889:1155..12391622929980.9890118-CDS-H-elongata_contig167889:1155..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167889 1156..1239 +
1691679233.417286-CDS-H-elongata_contig167889:1155..12391691679233.417286-CDS-H-elongata_contig167889:1155..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167889 1156..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167889.4233.1

>prot_H-elongata_contig167889.4233.1 ID=prot_H-elongata_contig167889.4233.1|Name=mRNA_H-elongata_contig167889.4233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MRVCVQVGTSGSGKSTVINLLLRFYDPEMGGVLVDGSDIRTLNLMWLRGQ
IGLEPVLFATTIADNIAYGSDGATREEVRAS
back to top

mRNA from alignment at H-elongata_contig167889:466..1239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167889.4233.1 ID=mRNA_H-elongata_contig167889.4233.1|Name=mRNA_H-elongata_contig167889.4233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at H-elongata_contig167889:466..1239+ (Himanthalia elongata Himel1 dioecious)
CCATTATACTATACCTTCATTTCCTTCGAAATGCGTGTGTGCGTCCAGGT
CGGAACGTCCGGGAGCGGTAAATCTACGGTCATAAATCTTCTCCTGAGGT
TCTACGATCCGGAGATGGGCGGCGTCCTGGTGGACGGATCGGACATACGG
ACGCTCAACTTGATGTGGCTGAGGGGGCAAATCGGCCTGGTGTCGCAGGC
GAGTGGAATCGAATCGAATCGAATCGAGCTGTTTCGGCGCTGTTTTTTGT
TTCCTCTCGGCCGCGCTTTAAGGAGGCACTAGATTCGGCTGAGGCTACTT
GATATAAAAATTATCTTATCTCATATATTTCATAAACATACACACACACA
CACAAAATACCAACATGCGCCTTTTCTTTTCTAAAAAAAGTTCGTTCGTC
AGGAAAAAATACCATGATGGTATGATTCAAGTACTTGTGCGATTACACAC
ACACACACACACGGGGGGTGGGGGGGGGTGTAGTCAAGTGTTTCATGTCT
TTAGCTGTTACCAGTTGACCACGTATCCTCAGGACGGGGGTTGGAGCAGG
CACTGAAACGCCGCTGATATATTTTATCTCGCTGTTGGCAACCGCAGAAG
ATCCTGAGAGTCGTATCACCTAAAGACGTGCCTTTGTTATTGATGATGCT
ATTGCTGCTTACGATCTGGCTCTGGTTCTGGATCTGACAGGAGCCTGTGT
TGTTCGCAACGACCATAGCGGACAACATTGCCTACGGAAGCGATGGAGCT
ACTCGGGAGGAGGTGAGAGCGTCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig167889:466..1239+

>mRNA_H-elongata_contig167889.4233.1 ID=mRNA_H-elongata_contig167889.4233.1|Name=mRNA_H-elongata_contig167889.4233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig167889:466..1239+ (Himanthalia elongata Himel1 dioecious)
ATGCGTGTGTGCGTCCAGGTCGGAACGTCCGGGAGCGGTAAATCTACGGT
CATAAATCTTCTCCTGAGGTTCTACGATCCGGAGATGGGCGGCGTCCTGG
TGGACGGATCGGACATACGGACGCTCAACTTGATGTGGCTGAGGGGGCAA
ATCGGCCTGATGCGTGTGTGCGTCCAGGTCGGAACGTCCGGGAGCGGTAA
ATCTACGGTCATAAATCTTCTCCTGAGGTTCTACGATCCGGAGATGGGCG
GCGTCCTGGTGGACGGATCGGACATACGGACGCTCAACTTGATGTGGCTG
AGGGGGCAAATCGGCCTGGAGCCTGTGTTGTTCGCAACGACCATAGCGGA
CAACATTGCCTACGGAAGCGATGGAGCTACTCGGGAGGAGGTGAGAGCGT
CGGAGCCTGTGTTGTTCGCAACGACCATAGCGGACAACATTGCCTACGGA
AGCGATGGAGCTACTCGGGAGGAGGTGAGAGCGTCG
back to top