mRNA_H-elongata_contig1677.4226.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: A0A6H5JB60_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB60_9PHAE) HSP 1 Score: 513 bits (1321), Expect = 2.970e-170 Identity = 323/602 (53.65%), Postives = 378/602 (62.79%), Query Frame = 2
Query: 2 GELETAMGRLDEEKRLRKQCEAERVRLAIENESLKDRLARLTLREDATIAAGQSTDGRRSRQTPAA-------SCCLTLGRPLQPTSS---------------TPPPG---PTPRVMQGRRSSAVPSLPAAGTINNTSSGNGHGSGN------ECGENAFGEADTTTRLRFELTLSKGLRSGRVAEFAGGEAGALLVSQEFRAAAGARGLMRHGVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAANQQQPVHSVCHTVDDELLCATMGGVWALRGATKGAEPRTSASGDRQESVAEQLQIQAGPCCSLSESRGS--SRESDVSMRRFLVSTRGSSASHTIFGLEESRTSPNMAALAEYTRVEDRASN---LEATHEARRGNGGYSLVPENNNSMAE-----RRLPVS---GIS-----------AWASRWKAVPFVAQGHQSRHALSRSLLWAPTTGDNLFIAGGDEGTNQPWIWDAMTGQVCRRLASHASPVLDVALLEGRSWGVGLLAAVSQGEMKMYQT 1642
GELETA L+EEKRLRKQCEAERVR++IEN SLKDRL+RL + A + + + S TP S T GR SS TP P P P R + P P I N G G GSG E G A +T +RFE LS+ + SGRVA FAGG AGAL+VSQE A G+RG +RHGVTKFSLAD R+ K+I LHREQ+RDVKFSA+ G GY+LSTSFD+TLKVCDLRTDSVV++Y +EG+GWSCQWS+T QMFCG+VD +R+SAV LFDLRSTAGAVRKLRAAA+Q+QP+HS+CHT DD L CATMGGVWA G TK E S + D +E AE+LQIQAG CCSLS+S G+ S SDV + FLVSTRGSSASH +F L + S AA A R A + E E RR GGY + E+ + E R P S G S +WA RW P VAQGHQS+H LSRSLLW P+ GD L IAGGDE T QPW+WDA+TG VC RLASH SPVLD A L+ S G GLL+AVSQ E+K+YQT
Sbjct: 188 GELETARTLLEEEKRLRKQCEAERVRVSIENASLKDRLSRLN-QGGAGVVSSSVARSQESVSTPGCPKPIRTLSQFATPGRAGPGVSSVAYSSSVDIGSSSFMTPCPKISHPGPAAAYSRFKTPPPRRP----IGNLDVGAGGGSGGRGLAATESGSEGAA-AGSTVAVRFEQLLSRDVLSGRVAAFAGGAAGALVVSQELGIAGGSRGSLRHGVTKFSLADLRHNKSIHLHREQLRDVKFSADGGSVGYILSTSFDKTLKVCDLRTDSVVVQYELEGSGWSCQWSSTTPTQMFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK--EGGGSEAWDPEELAAEKLQIQAGACCSLSQSHGTAASSSSDVDQQPFLVSTRGSSASHAVFRLASASASSRQAATAAGVRENPTAESHKDQEVAVEGRRDAGGYVAMEEDQSERFECEHATERQPSSFGFGSSLARLSAMVARRSWADRWTRSPRVAQGHQSQHTLSRSLLWDPSPGDGLLIAGGDERTKQPWMWDALTGDVCNRLASHRSPVLDFACLQDYSSGKGLLSAVSQSEIKVYQT 781
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: D8LKW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW0_ECTSI) HSP 1 Score: 433 bits (1113), Expect = 9.930e-141 Identity = 281/554 (50.72%), Postives = 336/554 (60.65%), Query Frame = 2
Query: 2 GELETAMGRLDEEKRLRKQCEAERVRLAIENESLKDRLARLTLREDATIAAGQSTDGRRSRQTPAASCCLTLGRPLQPTSSTPPPG------------------------PTPRVMQGRRSSAVPSL---PAAGTINNTSSGNGHGSGN------ECGENAFGEADTTTRLRFELTLSKGLRSGRVAEFAGGEAGALLVSQEFRAAAGARGLMRHGVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAANQQQPVHSVCHTVDDELLCATMGGVWALRGATKGAEPRTSASGDRQESVAEQLQIQAGPCCSLSESRGSSR--ESDVSMRRFLVSTRGSSASHTIFGLEESRTSPNMAALAEYTRVEDRASN---LEATHEARRGNGGYSLVPENNNSM------AERRLP-----------VSGISA---WASRWKAVPFVAQGHQSRHALSRSLLWAPTTGDNLFIAGGDEGTNQ 1489
GELETA L+EEKRLRKQCEAERVR++IEN SLKDRL+RL D A S+ RS+ + + C R L ++ PG P P++ + A P P I N G G GSG E G +T +RFE LS+ + SGRVA FAGG AGAL+VSQE A G+RG +RHGVTKFSLAD R+ K+I LHREQVRDVKFSA+ G GY+LSTSFD+TLKVCDLRTDSVV++Y +EG+GWSCQWS+T QMFCG+VD +R+SAV LFDLRSTAGAVRKLRAAA+Q+QP+HS+CHT DD L CATMGGVWA G TK E S + DR+E AE+LQIQAG CCSLS+S G++ SDV + FLVSTRGSSASHT+F L + AA A A + E E +R GG + E+ + A R P +S + A WA RW P VAQGHQS+H LSRSLLW P+ GD L IAGGDE T Q
Sbjct: 113 GELETARTLLEEEKRLRKQCEAERVRVSIENASLKDRLSRL----DQGGAGVVSSIVARSQGSVSTPGCPKPKRTLSQLAT---PGGAGPGVSSVAYSSSVDIGSNSFMTPCPKISHSGPAVAYPQFKTPPPRRPIGNLDVGAGGGSGGWGLAATESGSEGAA-VGSTVAVRFEQLLSRDVLSGRVAAFAGGAAGALVVSQELGIAGGSRGSLRHGVTKFSLADLRHNKSIHLHREQVRDVKFSADGGSVGYILSTSFDKTLKVCDLRTDSVVVQYELEGSGWSCQWSSTAPTQMFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK--EGGVSEAWDREEQAAEKLQIQAGACCSLSQSHGTAAASSSDVDQQPFLVSTRGSSASHTVFRLAPASACSRQAAAAAGVGENPTAESHKDQEVAVEGQRDAGGNVAMEEDQSEEKFECEHAVERQPSSLGFDTSLARLSAVVARRSWADRWTRSPRVAQGHQSQHTLSRSLLWDPSPGDGLLIAGGDERTKQ 656
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: A0A6P8J5H9_ACTTE (E3 ubiquitin-protein ligase RFWD3-like n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J5H9_ACTTE) HSP 1 Score: 98.6 bits (244), Expect = 8.060e-18 Identity = 94/375 (25.07%), Postives = 158/375 (42.13%), Query Frame = 2
Query: 548 GVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAANQQQPVHSVCHTVDD--------ELLCATMGGVWALRGATKGAE--PRTSASGDRQESVAEQLQIQAGPCCSLSESRGSSRESDVSMRRFLVSTRGSSASHTIFGLEESRTSPNMAALAEYTRVEDRASNLEATHEARRGNGGYSLVPENNNSMAERRLPVSGISAWASRWKAVPFVAQGHQSRHALSRSLLW-APTTGDNLFIAGGDEGTNQPWIWDAMTGQVCRRLASHASPVLDVALLEGRSWGVGLLAAVSQGEMKMYQ 1639
GV K S D ++ + + +H++ +RD FS + G G +L+ D+T+K+ + +++VV YS WSC W +DSN M+CG+++ S ++FD+R+T ++ L+ + PV S+ H D LL +GG +T G + P T L + G C SLS F TR H +F L S+ P + E + + + + + S P + A V + S+ + V G + LSRS L+ +P ++L +A DE +WD TG ++L VLDV L G L +++ ++ +Y+
Sbjct: 335 GVLKVSSLDVKHSEFVQIHQKPLRDACFSCQ--GDGLLLTAGMDKTVKITSMISNTVVQSYSTPVPAWSCAWDNSDSNYMYCGLMNGS----CLMFDVRNTNTFLKNLKTEGDSSCPVISLAHVKPDINSKLRPGGLLVCKLGGACFWE-STFGVDYLPHT-------------LMLPEGSCTSLS---------------FEPKTR-----HCMFSLRPSKNLPK----TRHVVCELQGNGIGVSTARAQSEDDPSTAPNEADGSASN---VGSLITCNSKMQCV-----GGPIQKLLSRSSLFTSPDNSESLIVAAPDEAAKATLLWDGFTGNKLQKLPYQGETVLDV--LPFTVNGHSFLTTITEQKLDVYR 655
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: A0A433CZA3_9FUNG (RING-type domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CZA3_9FUNG) HSP 1 Score: 78.6 bits (192), Expect = 1.650e-11 Identity = 64/232 (27.59%), Postives = 114/232 (49.14%), Query Frame = 2
Query: 545 HGVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCD-LRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAANQQ-QPVHSVCHTVDDE------LLCATMGGVWALRGATKGAEPRTSASGDRQES--VAEQLQIQAGPCCSLSESRGSSRESDVSMRRFLVSTRGSS-ASHTIFGLEESRTSPNMAAL 1207
HG+ K SL + ++ +H + +RD + + G+G +L+TSFDRTLK+ +R++S V +++E GWSC W+ + MFCG+ + + V++FD+R T V +L+ +P+HS+ + + LL A V+ + G + G+ +++ +QI A C S+S D ++ L S RG+S H + L + P + A+
Sbjct: 330 HGLLKISLRELSSQEYATIHCKPIRDAQCCPD--GSGLLLTTSFDRTLKLTSTVRSNSTVQCFNLENPGWSCCWNNDNPQYMFCGLANDT----VLMFDIRQTKAPVTRLQDHDKTGGKPLHSLIYIPRSDKSNASGLLAANFDHVFLWESNSNGESFSSGLQGNAEKARCTVFDMQIPAATCYSVSH--------DPMTQQVLGSFRGTSFTKHVVSALNITDGLPTLHAM 547
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: A0A556THP3_BAGYA (E3 ubiquitin-protein ligase RFWD3 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556THP3_BAGYA) HSP 1 Score: 69.3 bits (168), Expect = 1.360e-8 Identity = 81/344 (23.55%), Postives = 140/344 (40.70%), Query Frame = 2
Query: 548 GVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAANQQQPVHSVCHTVDDELLCATMGGVWALRGATKGAEPRTSASGDRQESVAEQLQIQAGPCCSLSESRGSSRESDVSMRRFLVSTRGSSASHTIFGLEESRTSPNM-AALAEYTRVEDRASNLEATHEARRGNGGYSLVPENNNSMAERRLPVSGISAWASRWKAVPFVAQGHQSRHALSRSLLWAPTTGDNLFIAGGDEGTNQPWIWDAMTGQVCRRLASHASPVLDVALLE 1576
GV K S + + + +H +Q+R + F+ + G +LS SFD T+K+ L T++VV Y+ WSC W ++N ++ G+ + S V ++D R T+ V++L A PV S+ + GG+ + G+ +G G L +++G C + + + R LV+ R RT+P++ L E R P +++ A PV S V G S+ ++ +P T D + GDEG+N +WDA +G + ++L + PV+D+ E
Sbjct: 381 GVKKISTVNLKASHYVPIHVKQIRGLAFNRQHDGL--LLSASFDNTIKLTSLFTNTVVQAYNTGKPVWSCCWCHDNNNYIYAGLSNGS----VRVYDTRDTSTHVQEL-APLRSSSPVVSLSYLPRAASNLFPCGGL--IAGSLEGGCFWEQVDGSTYRQHV--LPLESGGCTDI--------QVEPESRHCLVTYR------------PGRTNPSLRCVLMELNRS-----------------------PHQDSAQA----PVCSCSP-------VQTFTAGSSSKLLTKNAVFKSPAT-DATLVCAGDEGSNSTMVWDASSGALLQKLPADI-PVMDICPFE 657
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: A0A1U8BV69_MESAU (E3 ubiquitin-protein ligase RFWD3 isoform X1 n=8 Tax=Cricetinae TaxID=10026 RepID=A0A1U8BV69_MESAU) HSP 1 Score: 69.3 bits (168), Expect = 1.450e-8 Identity = 41/139 (29.50%), Postives = 75/139 (53.96%), Query Frame = 2
Query: 548 GVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAANQQQPVHSVCHTVDDELLCATMGGVWA 964
GV S A+ + + I +H +Q+R + FS+ + G +LS SFD T+K+ L T++VV Y+ WSC W ++N ++ G+ + S ++++DLR+T +++L + P+ S+ + + GGV A
Sbjct: 463 GVKMLSTANMKSSQYIPMHSKQIRGLAFSSRS--KGLLLSASFDNTIKLTSLETNTVVQTYNTGRPAWSCCWCLDENNYIYAGLANGS----ILMYDLRNTNAYIQEL-VPQKARCPLVSLSYLPRAAVAAFPYGGVLA 594
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: UPI000C6DBBDA (E3 ubiquitin-protein ligase RFWD3-like isoform X1 n=6 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DBBDA) HSP 1 Score: 67.8 bits (164), Expect = 3.930e-8 Identity = 84/342 (24.56%), Postives = 139/342 (40.64%), Query Frame = 2
Query: 548 GVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAANQQQPVHSVCHTVDDELLCATMGGVWALRGATKGAEPRTSASGDRQESVAEQLQIQAGPCCSLSESRGSSRESDVSMRRFLVSTRGSSASHTIFGLEESRTSPNMAALAEYTRVEDRASNLEA--THEARRGNGGYSLVPENNNSMAERRLPVSGISAWASRWKAVPFVAQGHQSRHALSRSLLWAPTTGDNLFIA-GGDEGTNQPWIWDAMTGQVCRRLASHASPVLDV 1564
G+ K S DFR + + +H++ ++D+ F VL+ S DR++K+ ++ ++S+V Y++ WSC WS D NQ F G+ ++ ++ FD R T + +L A + PV + + + + +L G G Q CC L E + RESD + H + LE S TS + + V R S A TH ++ E + R V I + + + G S+ +S+S L+ ++ +A GDE IWDA G+ ++L + PVLDV
Sbjct: 338 GIKKISTMDFRVSEFVSIHQKPIKDIAFHRSDT---LVLTASMDRSIKLTNVLSNSIVQSYTLPLEAWSCVWSKDDPNQFFVGL----KNGSIFQFDTRMTNSHIFQL-PAVGMKSPVIGL------QYIQKQLNSGSSLNGLLSG---------------------QLSTCC-LYEMK---RESDYKL-------------HPL-PLEGSFTSLSYEPGTGHVLVSCRPSGKHASVTH----------MLCELAIDESSRDSDVGNICSCS-----IIQSFSGGDSQVQISKSNLFLHPKNESCILACAGDERAQAALIWDACNGERLQQLKVNDPPVLDV 611
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: A0A1A6HTS8_NEOLE (RING-type domain-containing protein n=9 Tax=Neotominae TaxID=337963 RepID=A0A1A6HTS8_NEOLE) HSP 1 Score: 67.4 bits (163), Expect = 5.100e-8 Identity = 41/139 (29.50%), Postives = 75/139 (53.96%), Query Frame = 2
Query: 548 GVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAANQQQPVHSVCHTVDDELLCATMGGVWA 964
GV S A+ + + I +H +Q+R + FS+ + G +LS SFD T+K+ L T++VV Y+ WSC W ++N ++ G+ + S ++++DLR+T +++L + P+ S+ + + GGV A
Sbjct: 375 GVKMLSTANMKSSQYIPMHGKQIRGLAFSSXS--KGLLLSASFDNTIKLTSLETNTVVQTYNTGRPVWSCCWCLDENNYIYAGLANGS----ILIYDLRNTNAYIQEL-VPQKARCPLVSLSYLPRAAVAAFPYGGVLA 506
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: UPI0020209E5E (E3 ubiquitin-protein ligase RFWD3 isoform X2 n=8 Tax=Arvicolinae TaxID=39087 RepID=UPI0020209E5E) HSP 1 Score: 67.4 bits (163), Expect = 5.830e-8 Identity = 35/108 (32.41%), Postives = 64/108 (59.26%), Query Frame = 2
Query: 548 GVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKL 871
GV S A+ + + I +H +Q+R + FS+ + G +LS SFD T+K+ L T++VV Y+ WSC W ++N ++ G+ + S ++++DLR+T +++L
Sbjct: 478 GVKMLSTANMKSSQYIPMHSKQIRGLAFSSRS--KGLLLSASFDNTIKLTSLETNTVVQTYNTGRPVWSCCWCLDENNYIYAGLANGS----ILIYDLRNTNAYIQEL 579
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Match: A0A087T1N0_STEMI (E3 ubiquitin-protein ligase RFWD3 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1N0_STEMI) HSP 1 Score: 65.5 bits (158), Expect = 1.870e-7 Identity = 36/113 (31.86%), Postives = 62/113 (54.87%), Query Frame = 2
Query: 548 GVTKFSLADFRYEKNIFLHREQVRDVKFSAEAGGAGYVLSTSFDRTLKVCDLRTDSVVIEYSVEGNGWSCQWSATDSNQMFCGIVDSSRSSAVILFDLRSTAGAVRKLRAAAN 886
G K S D + + +++H++ +RD+ F G VL+ S D+++++ ++ T++VV Y V+ + WSC W A D F G+ +S V LFD+R T+ V +L N
Sbjct: 279 GFRKLSTMDMKPSEFVWVHQKPIRDMAFHVHDG---LVLTGSLDKSVRITNILTNTVVQTYVVDSDVWSCAWDADDPVYFFAGL----KSGGVYLFDIRVTSRYVHELPRFGN 384 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1677.4226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1677.4226.1 >prot_H-elongata_contig1677.4226.1 ID=prot_H-elongata_contig1677.4226.1|Name=mRNA_H-elongata_contig1677.4226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=544bp MGRLDEEKRLRKQCEAERVRLAIENESLKDRLARLTLREDATIAAGQSTDback to top mRNA from alignment at H-elongata_contig1677:6269..10796+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1677.4226.1 ID=mRNA_H-elongata_contig1677.4226.1|Name=mRNA_H-elongata_contig1677.4226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4528bp|location=Sequence derived from alignment at H-elongata_contig1677:6269..10796+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1677:6269..10796+ >mRNA_H-elongata_contig1677.4226.1 ID=mRNA_H-elongata_contig1677.4226.1|Name=mRNA_H-elongata_contig1677.4226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3264bp|location=Sequence derived from alignment at H-elongata_contig1677:6269..10796+ (Himanthalia elongata Himel1 dioecious)back to top |