mRNA_H-elongata_contig167639.4222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167639.4222.1
Unique NamemRNA_H-elongata_contig167639.4222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: D8LQH2_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQH2_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.520e-57
Identity = 91/140 (65.00%), Postives = 110/140 (78.57%), Query Frame = 1
Query:    1 VMIYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAIISKYIHPSQLLSFVGGQSQWLFDPSVYFYNDVASL 420
            +MIY LERAIRLMPR SWQYT+VIDCEG         +GL+ LP ++YMKK+F++LSH+YPMRLG VLF NVGP+VMLCW++VSPLL  RTK KM  IPS+     +KYIHPSQLLSF GG+S W +DP+VYF +D ASL
Sbjct:  287 LMIYNLERAIRLMPRNSWQYTIVIDCEG---------MGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSTWQYDPAVYFSSDAASL 417          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: A0A835ZL56_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL56_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.120e-27
Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    7 IYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAIISKYIHPSQLLSFVGGQSQWLFDPSVYF 399
            +YT+ERA R   RG   YT+V DC G          GL +LP + +++ +F MLS +YPMRLG +L  N   +V LCWR+ SP++  RTK+K++F     RA++++Y+ P++L   +GG S + +D + YF
Sbjct:  101 VYTVERAWRARARGVEAYTIVADCRG---------FGLTHLPPLPFLRAMFGMLSRHYPMRLGHILLCNASASVHLCWRVCSPIVPPRTKDKIVFAREGDRALVARYVAPAELPRALGGASAYEYDAARYF 222          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: A0A7S2XX21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX21_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.470e-19
Identity = 49/125 (39.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 VMIYTLERAIRLMP--RGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAI-ISKYIHPSQLLSFVGGQ 366
            +++YTLERAI+ M   RG  ++ V++DC G G SR          P IS +   F+ L HNYPMRLG V  VN G  + + W++VSP+L++RT++K+ F+   + +  I +Y++P  L    GG+
Sbjct:   54 LLVYTLERAIKSMDSKRGVEKFIVLVDCTGFGLSRA---------PPISLVTGQFKTLMHNYPMRLGKVFVVNAGTPMNMLWKIVSPILNERTRHKVFFLSEKEISQHIPQYVNPDVLEVEFGGK 169          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: UPI000867B36A (CRAL/TRIO domain-containing protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000867B36A)

HSP 1 Score: 66.2 bits (160), Expect = 5.070e-10
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    4 MIYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAIISKYIHPSQLLSFVGGQSQWLFDPSVYF 399
            +++ LERAI +MPRG     ++I+ +G GSS           PS+S  K++  +L  +YP RLG  L +NV   V   ++L++P +   T+ KM+F      A +  ++ PSQL    GG  ++ +    Y+
Sbjct:  193 LVWGLERAIDMMPRGVENLALLINFKGSGSS---------TTPSLSQGKQVMSILQTHYPERLGRALIINVPFFVNGFFKLITPFIDPNTREKMVF-----NADLRNHVPPSQLDRNFGGDCEFEYVHGDYW 310          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: A0A0E9NRI8_SAICN (CRAL-TRIO domain-containing protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NRI8_SAICN)

HSP 1 Score: 66.2 bits (160), Expect = 5.750e-10
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    4 MIYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAIISKYIHPSQLLSFVGGQSQWLFDPSVYF 399
            +++ LERAI +MPRG     ++I+ +G GSS           PS+S  K++  +L  +YP RLG  L +NV   V   ++L++P +   T+ KM+F      A +  ++ PSQL    GG  ++ +    Y+
Sbjct:  193 LVWGLERAIDMMPRGVENLALLINFKGSGSS---------TTPSLSQGKQVMSILQTHYPERLGRALIINVPFFVNGFFKLITPFIDPNTREKMVF-----NADLRNHVPPSQLDRNFGGDCEFEYVHGDYW 310          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: A0A7S2D6C1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6C1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.760e-9
Identity = 37/122 (30.33%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   10 YTLERAI-RLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRA-IISKYIHPSQLLS-FVGGQ 366
            Y LE A+ R    G  QYT ++D    G+           +P +  +K  F +++ +YP+R G+   V+ G  + L WR++ P++ +RT+ K+  +   + A I++  I PSQL   F GG+
Sbjct:    1 YNLETALARGAEAGLDQYTFIVDLHNTGA-----------MPPLKTVKASFEIMARHYPLRQGNTFLVHGGSMISLLWRILEPVIPERTRAKVRIVSEKEEAEILTSLIAPSQLEKRFKGGE 111          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: I2FT99_USTH4 (Related to PDR16-protein involved in lipid biosynthesis and multidrug resistance / PHO13-4-nitrophenylphosphatase n=2 Tax=Ustilago TaxID=5269 RepID=I2FT99_USTH4)

HSP 1 Score: 62.4 bits (150), Expect = 1.340e-8
Identity = 42/133 (31.58%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    4 MIYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAIISKYIHPSQL-LSFVGGQSQWLFDPSVYF 399
            ++YTLERAI +MP+G   Y +VID +   S            PS+S  + +  +L ++Y  RLG    VNV   +   +  V+P L   TK K+ F      A +++Y+   QL   F GG+  + +D   Y+
Sbjct:  178 LVYTLERAIDMMPQGVENYAIVIDYKSATSQSN---------PSLSTARTVANILQNHYVERLGKAFIVNVPWFINAFFSAVTPFLDPVTKEKIKF-----NANLTEYVPKEQLDAEFAGGRYNYEWDFKTYW 296          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: A0A1Y1XZ57_9FUNG (CRAL/TRIO domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XZ57_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 2.060e-8
Identity = 35/131 (26.72%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    7 IYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAIISKYIHPSQLLSFVGGQSQWLFDPSVYF 399
            I+T+E+AI+L+P G+ Q+ ++ID +G   ++          P +S   ++  +L  +YP RLG    ++        ++LVSP +   T+NK+ F+   K   + + +    +   +GG+  + +D SVY+
Sbjct:  142 IFTIEKAIQLLPPGAEQFCLLIDYKGASMAKN---------PPLSQAAELLSILHAHYPERLGLAYLIDTPWYFSGFFKLVSPFIDPVTRNKINFVDRKKAEQMGEKLDMDYVEQHIGGKFDFEYDHSVYW 263          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: G0SHD5_CHATD (Putative phosphatidylinositol transporter protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0SHD5_CHATD)

HSP 1 Score: 61.6 bits (148), Expect = 2.180e-8
Identity = 36/133 (27.07%), Postives = 70/133 (52.63%), Query Frame = 1
Query:    4 MIYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAIISKYIHPSQLLS-FVGGQSQWLFDPSVYF 399
            ++Y +ER I LMP G     ++I+ +   +   T        P +S  +++  +L H+YP RLG  L +N+   V   ++L++P +  RT+ K+ F        +S+Y+ P Q+ + F  G  ++ ++ +VY+
Sbjct:  146 LVYMVERVIDLMPAGQETLALLINFKQSKTRSNTT-------PGMSLAREVLHILQHHYPERLGRALIINMPWFVTTFFKLITPFIDPRTREKLKFNED-----MSQYVPPEQMWNEFSTGMLEFEYEHAVYW 266          
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Match: W3VUR6_PSEA5 (CRAL-TRIO domain-containing protein n=3 Tax=Moesziomyces TaxID=63261 RepID=W3VUR6_PSEA5)

HSP 1 Score: 60.5 bits (145), Expect = 6.260e-8
Identity = 41/132 (31.06%), Postives = 65/132 (49.24%), Query Frame = 1
Query:    4 MIYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKKIFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSSKRAIISKYIHPSQLLSFVGGQSQWLFDPSVYF 399
            ++YTLERAI LMP G   Y +VID  G  S            PS+S  + +  +L ++Y  RLG    +NV   +   +  ++P L   TK K+ F      A +++++   QL    GG+  + +D  VY+
Sbjct:  173 LVYTLERAIDLMPEGVENYAIVIDYRGATSQSN---------PSLSTARAVANILQNHYVERLGRAFVMNVPWFLNAFFTAITPFLDPITKEKIRF-----NANLAEFVPAEQLDVEFGGRYNYEWDFDVYW 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167639.4222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQH2_ECTSI1.520e-5765.00CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A835ZL56_9STRA1.120e-2740.46CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2XX21_9STRA5.470e-1939.20Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
UPI000867B36A5.070e-1031.82CRAL/TRIO domain-containing protein n=1 Tax=Saitoe... [more]
A0A0E9NRI8_SAICN5.750e-1031.82CRAL-TRIO domain-containing protein n=1 Tax=Saitoe... [more]
A0A7S2D6C1_9STRA2.760e-930.33Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
I2FT99_USTH41.340e-831.58Related to PDR16-protein involved in lipid biosynt... [more]
A0A1Y1XZ57_9FUNG2.060e-826.72CRAL/TRIO domain-containing protein n=1 Tax=Basidi... [more]
G0SHD5_CHATD2.180e-827.07Putative phosphatidylinositol transporter protein ... [more]
W3VUR6_PSEA56.260e-831.06CRAL-TRIO domain-containing protein n=3 Tax=Moeszi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167639contigH-elongata_contig167639:5..1051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog2880.D8LQH2
EggNOG free text desc.intermembrane phospholipid transfer
EggNOG OGsKOG1470@1,KOG1470@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-10_005630.1
Exons3
Model size423
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167639.4222.1prot_H-elongata_contig167639.4222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167639 8..1051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.8105974-UTR-H-elongata_contig167639:4..71622929978.8105974-UTR-H-elongata_contig167639:4..7Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167639 5..7 +
1691679232.6093256-UTR-H-elongata_contig167639:4..71691679232.6093256-UTR-H-elongata_contig167639:4..7Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167639 5..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.953344-CDS-H-elongata_contig167639:7..1131622929978.953344-CDS-H-elongata_contig167639:7..113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167639 8..113 +
1691679232.6303306-CDS-H-elongata_contig167639:7..1131691679232.6303306-CDS-H-elongata_contig167639:7..113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167639 8..113 +
1622929979.0851197-CDS-H-elongata_contig167639:352..5451622929979.0851197-CDS-H-elongata_contig167639:352..545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167639 353..545 +
1691679232.6415706-CDS-H-elongata_contig167639:352..5451691679232.6415706-CDS-H-elongata_contig167639:352..545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167639 353..545 +
1622929979.0958095-CDS-H-elongata_contig167639:930..10511622929979.0958095-CDS-H-elongata_contig167639:930..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167639 931..1051 +
1691679232.6513073-CDS-H-elongata_contig167639:930..10511691679232.6513073-CDS-H-elongata_contig167639:930..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167639 931..1051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167639.4222.1

>prot_H-elongata_contig167639.4222.1 ID=prot_H-elongata_contig167639.4222.1|Name=mRNA_H-elongata_contig167639.4222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MIYTLERAIRLMPRGSWQYTVVIDCEGEGSSRETAWLGLRNLPSISYMKK
IFRMLSHNYPMRLGDVLFVNVGPTVMLCWRLVSPLLHQRTKNKMMFIPSS
KRAIISKYIHPSQLLSFVGGQSQWLFDPSVYFYNDVASL*
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mRNA from alignment at H-elongata_contig167639:5..1051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167639.4222.1 ID=mRNA_H-elongata_contig167639.4222.1|Name=mRNA_H-elongata_contig167639.4222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1047bp|location=Sequence derived from alignment at H-elongata_contig167639:5..1051+ (Himanthalia elongata Himel1 dioecious)
GTGATGATCTACACGTTGGAGAGGGCGATTCGACTCATGCCACGCGGTAG CTGGCAGTACACCGTCGTCATCGACTGCGAAGGCGAGGGGAGCTCACGGG AGACAGCCTGTAACAGTCGAGTCCGTGGAGTTCCACGGGCAACGCTTATC CCGCTTTGATCATTCCTCTCTCTGCCGTAGCTGCTGCCTTTTGTAAAGGC TTTGGTGACGCCCTGCAATATTTGGTACGGCCAGTGGTGACAGTGACAGT GACAGAGAGGGTGTCATTTCGTATCTTGTCCCACGAGATGCGCCGTGCTT ATCGAATACCCGCACTCAATGCGTTATACTCGTGTCCAACGATTGTAGGG TTGGGTCTGAGGAATCTTCCTTCGATCTCCTACATGAAGAAAATATTCAG GATGTTAAGTCACAACTACCCCATGCGACTGGGAGACGTTCTTTTCGTCA ACGTTGGACCGACCGTGATGCTCTGCTGGAGGCTTGTGTCGCCTTTGCTG CACCAGAGAACCAAGAACAAGATGATGTTCATCCCCAGCTCGTGGGTGAT CGTCTCTGACAGTTTATTGCCCCCTCTTATCTTTACTAATAATACATTCC CGCGTCCTTCAATGCATAATTTGGCCCAAAGCGTTATTTTCTCTGTAAGC ATCACGCATTCAAAGCGCGAGTTCTACAAAGGCTGACTTCGGCGGTTAGA GTTACTCTTGGTGGGATAGAGTAACACCATATCCCTGTCGGGGGACAGAC TCGCTTCGAACCCTCTTCAAAGGTTGCCGCATATCGCACTTTATTACATG TTCTACCATTTAGCATATCGCACTTCAGCAGCGTTGAGCCTTCAGCAGCG TTGAAGGTTGACTGACTCAGTTTGTGGACTTTTTTCGCTCCCTTTCGCCG GATGCCCGTCGTCCCCAACAAATCAGGAAGCGAGCGATAATTTCCAAGTA CATCCACCCGAGTCAGCTCCTTAGTTTCGTCGGTGGCCAGTCGCAATGGC TCTTTGATCCATCCGTTTATTTCTACAACGACGTGGCCAGCCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig167639:5..1051+

>mRNA_H-elongata_contig167639.4222.1 ID=mRNA_H-elongata_contig167639.4222.1|Name=mRNA_H-elongata_contig167639.4222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig167639:5..1051+ (Himanthalia elongata Himel1 dioecious)
ATGATCTACACGTTGGAGAGGGCGATTCGACTCATGCCACGCGGTAGCTG
GCAGTACACCGTCGTCATCGACTGCGAAGGCGAGGGGAGCTCACGGGAGA
CAGCCTATGATCTACACGTTGGAGAGGGCGATTCGACTCATGCCACGCGG
TAGCTGGCAGTACACCGTCGTCATCGACTGCGAAGGCGAGGGGAGCTCAC
GGGAGACAGCCTGGTTGGGTCTGAGGAATCTTCCTTCGATCTCCTACATG
AAGAAAATATTCAGGATGTTAAGTCACAACTACCCCATGCGACTGGGAGA
CGTTCTTTTCGTCAACGTTGGACCGACCGTGATGCTCTGCTGGAGGCTTG
TGTCGCCTTTGCTGCACCAGAGAACCAAGAACAAGATGATGTTCATCCCC
AGCTCGGTTGGGTCTGAGGAATCTTCCTTCGATCTCCTACATGAAGAAAA
TATTCAGGATGTTAAGTCACAACTACCCCATGCGACTGGGAGACGTTCTT
TTCGTCAACGTTGGACCGACCGTGATGCTCTGCTGGAGGCTTGTGTCGCC
TTTGCTGCACCAGAGAACCAAGAACAAGATGATGTTCATCCCCAGCTCGA
AGCGAGCGATAATTTCCAAGTACATCCACCCGAGTCAGCTCCTTAGTTTC
GTCGGTGGCCAGTCGCAATGGCTCTTTGATCCATCCGTTTATTTCTACAA
CGACGTGGCCAGCCTGTAGGAAGCGAGCGATAATTTCCAAGTACATCCAC
CCGAGTCAGCTCCTTAGTTTCGTCGGTGGCCAGTCGCAATGGCTCTTTGA
TCCATCCGTTTATTTCTACAACGACGTGGCCAGCCTGTAG
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