mRNA_H-elongata_contig167634.4221.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167634.4221.1
Unique NamemRNA_H-elongata_contig167634.4221.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A6H5J845_9PHAE (Cysteine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J845_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.960e-34
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 AKLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            AKLESMEPC+SVKDRIGLSMIDEAEKRGQIKPGVT LVEPTSGNTGIA AMVAAARGYD+VLTMPDSM
Sbjct:   92 AKLESMEPCNSVKDRIGLSMIDEAEKRGQIKPGVTTLVEPTSGNTGIACAMVAAARGYDIVLTMPDSM 159
[Close]
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A7S1GXT5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GXT5_HEMAN)

HSP 1 Score: 115 bits (288), Expect = 1.560e-30
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    4 KLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            KLESMEPC+SVKDRIG SMI+EAEKRG I PG T LVEPTSGNTGIALAMVAAA+GYDL+LTMP+SM
Sbjct:   98 KLESMEPCNSVKDRIGFSMINEAEKRGDITPGKTVLVEPTSGNTGIALAMVAAAKGYDLILTMPESM 164
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BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A7S0NV34_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NV34_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 1.770e-30
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    4 KLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            KLES EPC+SVKDRIG SMI EAEKRG IKPG T LVEPTSGNTGIALAMVAAA+GYDL+LTMP+SM
Sbjct:   89 KLESFEPCNSVKDRIGYSMITEAEKRGDIKPGETTLVEPTSGNTGIALAMVAAAKGYDLILTMPESM 155
[Close]
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A7S1TZA3_9STRA (Cysteine synthase n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZA3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.800e-30
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 AKLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            AKLESMEPC+SVKDRIGLSMI EAE+RG I PG T LVEPTSGNTGIALAMVAAA+GYDL+LTMP+SM
Sbjct:   47 AKLESMEPCNSVKDRIGLSMIKEAEERGMISPGKTTLVEPTSGNTGIALAMVAAAKGYDLILTMPESM 114
[Close]
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A7S3YES4_HETAK (Cysteine synthase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YES4_HETAK)

HSP 1 Score: 118 bits (295), Expect = 4.010e-30
Identity = 60/67 (89.55%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    4 KLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            KLESMEPC SVKDRIG SMID AEKRG I PG T LVEPTSGNTGIALAMVAAARGYDLVLTMPDSM
Sbjct:  102 KLESMEPCKSVKDRIGFSMIDRAEKRGAITPGKTTLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 168
[Close]
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A6S9FF26_HETAK (Cysteine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FF26_HETAK)

HSP 1 Score: 117 bits (293), Expect = 4.180e-30
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    4 KLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            KLESMEPCSSVKDRIG SMIDEA+KRG I PG + LVEPTSGNTGI LAMVAAARGYDL+LTMPDSM
Sbjct:   73 KLESMEPCSSVKDRIGFSMIDEAQKRGDITPGKSTLVEPTSGNTGIGLAMVAAARGYDLILTMPDSM 139
[Close]
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A7S0QXB0_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QXB0_9CRYP)

HSP 1 Score: 112 bits (280), Expect = 5.780e-30
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    4 KLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            KLESMEPCSSVKDRIG  MIDEAEKRG I PG T LVEPTSGNTG+ALAMVAAA+GY L+L MPDSM
Sbjct:   53 KLESMEPCSSVKDRIGKYMIDEAEKRGDITPGKTVLVEPTSGNTGVALAMVAAAKGYSLILVMPDSM 119
[Close]
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A7S3NI97_9STRA (Cysteine synthase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI97_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.100e-30
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 AKLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            AKLESMEPC+SVKDRIGLSMI EAEKRG+I+PG T LVEPTSGNTGIALAMVAAA+GY ++LTMP+SM
Sbjct:   48 AKLESMEPCNSVKDRIGLSMIAEAEKRGEIRPGETTLVEPTSGNTGIALAMVAAAKGYKIILTMPESM 115
[Close]
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A7S2Y141_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y141_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.790e-30
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 AKLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            AKLESMEPCSSVKDRIG SMI EAEKRG I PG T LVEPTSGNTGIALAMVAAA+GY+L+LTMP+SM
Sbjct:   76 AKLESMEPCSSVKDRIGKSMIVEAEKRGDIVPGKTILVEPTSGNTGIALAMVAAAKGYELILTMPESM 143
[Close]
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Match: A0A0M0JL59_9EUKA (Cysteine synthase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JL59_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 9.150e-30
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 AKLESMEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAARGYDLVLTMPDSM 204
            AKLESMEPCSSVKDRIG SMI EAE+RG I PGVT LVEPTSGNTGIALAMVAAA+GY+L+LTMP+SM
Sbjct:   78 AKLESMEPCSSVKDRIGYSMITEAEQRGDITPGVTTLVEPTSGNTGIALAMVAAAKGYELILTMPESM 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167634.4221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J845_9PHAE5.960e-3494.12Cysteine synthase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S1GXT5_HEMAN1.560e-3085.07Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0NV34_9EUKA1.770e-3085.07Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1TZA3_9STRA3.800e-3085.29Cysteine synthase n=3 Tax=Phaeomonas parva TaxID=1... [more]
A0A7S3YES4_HETAK4.010e-3089.55Cysteine synthase (Fragment) n=1 Tax=Heterosigma a... [more]
A0A6S9FF26_HETAK4.180e-3086.57Cysteine synthase n=1 Tax=Heterosigma akashiwo Tax... [more]
A0A7S0QXB0_9CRYP5.780e-3083.58Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]
A0A7S3NI97_9STRA7.100e-3083.82Cysteine synthase n=1 Tax=Aureoumbra lagunensis Ta... [more]
A0A7S2Y141_9STRA7.790e-3085.29Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0M0JL59_9EUKA9.150e-3085.29Cysteine synthase n=1 Tax=Chrysochromulina tobinii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167634contigH-elongata_contig167634:2..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue8.2e-22
Seed eggNOG ortholog44056.XP_009039224.1
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738,ko:K20553
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04016,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230,map04016
KEGG ModuleM00021
EggNOG free text desc.cysteine biosynthetic process from serine
EggNOG OGsCOG0031@1,KOG1252@2759
EC2.5.1.47
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167634.4221.1prot_H-elongata_contig167634.4221.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167634 2..1380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.741329-CDS-H-elongata_contig167634:1..1491622929978.741329-CDS-H-elongata_contig167634:1..149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167634 2..149 -
1691679232.5583308-CDS-H-elongata_contig167634:1..1491691679232.5583308-CDS-H-elongata_contig167634:1..149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167634 2..149 -
1622929978.7553084-CDS-H-elongata_contig167634:1339..13801622929978.7553084-CDS-H-elongata_contig167634:1339..1380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167634 1340..1380 -
1691679232.5808704-CDS-H-elongata_contig167634:1339..13801691679232.5808704-CDS-H-elongata_contig167634:1339..1380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167634 1340..1380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.768973-UTR-H-elongata_contig167634:1380..13951622929978.768973-UTR-H-elongata_contig167634:1380..1395Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167634 1381..1395 -
1691679232.5916364-UTR-H-elongata_contig167634:1380..13951691679232.5916364-UTR-H-elongata_contig167634:1380..1395Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167634 1381..1395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167634.4221.1

>prot_H-elongata_contig167634.4221.1 ID=prot_H-elongata_contig167634.4221.1|Name=mRNA_H-elongata_contig167634.4221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MEPCSSVKDRIGLSMIDEAEKRGQIKPGVTKLVEPTSGNTGIALAMVAAA
RGYDLVLTMPDSM
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mRNA from alignment at H-elongata_contig167634:2..1395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167634.4221.1 ID=mRNA_H-elongata_contig167634.4221.1|Name=mRNA_H-elongata_contig167634.4221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-elongata_contig167634:2..1395- (Himanthalia elongata Himel1 dioecious)
GCGAAGCTCGAGTCTATGGAGCCCTGCAGCTCTGTCAAGGATCGCATCGG
CCTCAGGTGTGTGCATGTCGTGTGTGGTGTGTATGGCAAGCCCATGGGGC
CGTGTTGACCACCGACCGAATCCTTGTCTTGATGCTGCGCAATCGTTAGG
TTTGGTAGTAGGTAACCTGGGTGATGTCTTATCTCTCGTGAATGATTGGT
CAGGATAGGCGTAGGTAATGAATGTTCTAGGAATTTTATGCTATTAACAT
TAATATAATATATTGCAAGGTGGTGCTGTTAAGAGGGTTTTGTACTATAA
TATTCATATAATAATCAATATTGATATAATAATATCCACCACTTAATGCT
TCAGCCTTTTGGTGGATACTACATTGAAATTGCCAAGACCCCACAGCACC
ATCTTTTCTCTCTTTTTATCCACCTCTTGATGTTTCAGTTGATGTTTCAG
GTGATGTTTCAGGTGCCTCATTTATCTTCATCGCCCTGTGTACGTGTTTG
TATTTATGAAATTGCACATAAGCGCGCAATCCGACCCTGTCATGCTAGTC
TTCTCGGCTACTCTTCTAGTATTGATCTAGTATTGATACACCTCTTCCTC
TTATGTATCTAATTTTAATTTCAACCTCTCATTGTTTTCCTCGCCTTATT
GACATCCGCCTCAGACTGCCCCCCGTCCCCCGTCTCCACACCCTGATTTT
TTTTTGTTCACCTCGAAGTTATTTATTGTGCCTTCTTATTTACCTTGATT
CGGTTAGGCCTTGAACCGAAAAAAGCATCCGAAAGAAGTCTAGCCGAAAA
AAAACTCTTAGTGATCCATGGTATACTGTTAACTCTATACTTTTGATGTG
TCGTCGCCAATCCCGTTTGTGGTCAGATGAGAAACGCAAAAAATATTGAA
TCCCACCCGAAATTATCTACATAGCACACAGAATGCGTACAACACTCAGA
TCTAGAAATACCACAGCTCTTGGGGAGGTTACCACACAGAGCAGCGAACC
AGCAAGGGTTCGTGTGCACAAGTCGGCGATGGAGGGTGATGGAGGTGACC
CCCCGGAAAATGCATTTCATGACATGCTAAGCTTAAACCATAGGAAACCC
CGTCATGGAGGAACGTGTCACGTTCAACATGTAATGCGTATGCCAATCTA
TACGTATAACATATAGGCCACTCTATACGAGTATCCTTATCTATTTATGA
TGTCTATTGTGCTCTCTCTCTATTTTTTCGTTCTTGTTAAAATCAGCATG
ATCGATGAGGCGGAGAAGCGAGGCCAGATCAAGCCAGGGGTGACGAAGCT
TGTCGAGCCTACCAGCGGAAACACAGGCATCGCTTTGGCCATGGTTGCTG
CTGCGCGAGGCTACGATTTGGTTCTCACAATGCCGGACAGCATG
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Coding sequence (CDS) from alignment at H-elongata_contig167634:2..1395-

>mRNA_H-elongata_contig167634.4221.1 ID=mRNA_H-elongata_contig167634.4221.1|Name=mRNA_H-elongata_contig167634.4221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig167634:2..1395- (Himanthalia elongata Himel1 dioecious)
ATGGAGCCCTGCAGCTCTGTCAAGGATCGCATCGGCCTCAGATGGAGCCC
TGCAGCTCTGTCAAGGATCGCATCGGCCTCAGCATGATCGATGAGGCGGA
GAAGCGAGGCCAGATCAAGCCAGGGGTGACGAAGCTTGTCGAGCCTACCA
GCGGAAACACAGGCATCGCTTTGGCCATGGTTGCTGCTGCGCGAGGCTAC
GATTTGGTTCTCACAATGCCGGACAGCATGCATGATCGATGAGGCGGAGA
AGCGAGGCCAGATCAAGCCAGGGGTGACGAAGCTTGTCGAGCCTACCAGC
GGAAACACAGGCATCGCTTTGGCCATGGTTGCTGCTGCGCGAGGCTACGA
TTTGGTTCTCACAATGCCGGACAGCATG
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