mRNA_H-elongata_contig167632.4220.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167632.4220.1
Unique NamemRNA_H-elongata_contig167632.4220.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A0A067GWR4_CITSI (Uncharacterized protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067GWR4_CITSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.090e-13
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 CFQEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            C QED+ +++LV++YGPK+WS IA HLPGRIGKQCRE
Sbjct:   11 CNQEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRE 47
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: D8LQY0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.340e-12
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:   13 EDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            EDDSL++LV+QYG KRWSVIA+HLPGRIGKQCRE
Sbjct:  161 EDDSLMRLVEQYGAKRWSVIAMHLPGRIGKQCRE 194
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A0A7J6HJV1_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6HJV1_CANSA)

HSP 1 Score: 63.9 bits (154), Expect = 7.580e-11
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   10 QEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            +EDD +V+LV QYGPK+WS IA HLPGRIGKQCRE
Sbjct:  120 EEDDVIVELVKQYGPKKWSTIANHLPGRIGKQCRE 154
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A0A4S4D924_CAMSI (Uncharacterized protein n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4D924_CAMSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.580e-11
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 QEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            +ED+ +V+LVD+YGPK+WS IA HLPGRIGKQCRE
Sbjct:   95 EEDEIIVELVDKYGPKKWSTIAQHLPGRIGKQCRE 129
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A9UVK9_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UVK9_MONBE)

HSP 1 Score: 62.4 bits (150), Expect = 7.990e-11
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 QEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            +EDD +++LVD+YGPKRWS+IA HL GRIGKQCRE
Sbjct:  100 EEDDLVIQLVDKYGPKRWSLIAGHLKGRIGKQCRE 134
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A0A5C7HZ36_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HZ36_9ROSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.030e-10
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 QEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            +ED+ +++LVD+YGPK+WS IA HLPGRIGKQCRE
Sbjct:  188 EEDEIIIELVDRYGPKKWSTIAQHLPGRIGKQCRE 222
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A0A2I4DX76_JUGRE (transcription factor MYB3R-1-like isoform X1 n=19 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4DX76_JUGRE)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-10
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 QEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            +ED+ +VKLV++YGPK+WS IA HLPGRIGKQCRE
Sbjct:   95 EEDEIIVKLVNKYGPKKWSTIAQHLPGRIGKQCRE 129
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A0A328D0G3_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328D0G3_9ASTE)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-10
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 QEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            +ED+ +++LVD+YGPK+WS IA HLPGRIGKQCRE
Sbjct:   91 EEDEIIIELVDKYGPKKWSTIAQHLPGRIGKQCRE 125
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A0A7C9D7Q2_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9D7Q2_OPUST)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-10
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 QEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            +ED+ +++LV++YGPK+WS IA HLPGRIGKQCRE
Sbjct:   59 EEDEIIIQLVNKYGPKKWSTIAQHLPGRIGKQCRE 93
[Close]
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Match: A0A803LBT6_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LBT6_CHEQI)

HSP 1 Score: 63.2 bits (152), Expect = 1.420e-10
Identity = 25/35 (71.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:   10 QEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE 114
            +ED+ +V+LV++YGPK+WS+IA HLPGRIGKQCRE
Sbjct:  107 EEDEVIVQLVNKYGPKKWSIIAQHLPGRIGKQCRE 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167632.4220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067GWR4_CITSI2.090e-1370.27Uncharacterized protein (Fragment) n=1 Tax=Citrus ... [more]
D8LQY0_ECTSI2.340e-1285.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7J6HJV1_CANSA7.580e-1177.14Uncharacterized protein n=3 Tax=Cannabis sativa Ta... [more]
A0A4S4D924_CAMSI7.580e-1174.29Uncharacterized protein n=3 Tax=Camellia sinensis ... [more]
A9UVK9_MONBE7.990e-1174.29Predicted protein (Fragment) n=1 Tax=Monosiga brev... [more]
A0A5C7HZ36_9ROSI1.030e-1071.43Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A2I4DX76_JUGRE1.040e-1074.29transcription factor MYB3R-1-like isoform X1 n=19 ... [more]
A0A328D0G3_9ASTE1.040e-1071.43Uncharacterized protein n=3 Tax=Cuscuta sect. Clei... [more]
A0A7C9D7Q2_OPUST1.250e-1068.57Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A803LBT6_CHEQI1.420e-1071.43Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167632contigH-elongata_contig167632:1209..1322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7.4e-10
Seed eggNOG ortholog2880.D8LQY0
KEGG koko:K09422,ko:K16599
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.702756-CDS-H-elongata_contig167632:1208..13221622929978.702756-CDS-H-elongata_contig167632:1208..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167632 1209..1322 -
1691679232.5319052-CDS-H-elongata_contig167632:1208..13221691679232.5319052-CDS-H-elongata_contig167632:1208..1322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167632 1209..1322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167632.4220.1prot_H-elongata_contig167632.4220.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167632 1209..1322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167632.4220.1

>prot_H-elongata_contig167632.4220.1 ID=prot_H-elongata_contig167632.4220.1|Name=mRNA_H-elongata_contig167632.4220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
FCFQEDDSLVKLVDQYGPKRWSVIALHLPGRIGKQCRE
back to top

mRNA from alignment at H-elongata_contig167632:1209..1322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167632.4220.1 ID=mRNA_H-elongata_contig167632.4220.1|Name=mRNA_H-elongata_contig167632.4220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig167632:1209..1322- (Himanthalia elongata Himel1 dioecious)
TTCTGTTTCCAGGAGGACGATTCCCTTGTGAAGCTGGTGGATCAGTATGG
TCCGAAGCGGTGGTCGGTGATCGCCCTGCATCTCCCGGGGAGAATAGGAA
AACAGTGCAGGGAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig167632:1209..1322-

>mRNA_H-elongata_contig167632.4220.1 ID=mRNA_H-elongata_contig167632.4220.1|Name=mRNA_H-elongata_contig167632.4220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig167632:1209..1322- (Himanthalia elongata Himel1 dioecious)
TTCTGTTTCCAGGAGGACGATTCCCTTGTGAAGCTGGTGGATCAGTATGG
TCCGAAGCGGTGGTCGGTGATCGCCCTGCATCTCCCGGGGAGAATAGGAA
AACAGTGCAGGGAATTCTGTTTCCAGGAGGACGATTCCCTTGTGAAGCTG
GTGGATCAGTATGGTCCGAAGCGGTGGTCGGTGATCGCCCTGCATCTCCC
GGGGAGAATAGGAAAACAGTGCAGGGAA
back to top