mRNA_H-elongata_contig167628.4219.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167628.4219.1
Unique NamemRNA_H-elongata_contig167628.4219.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.570e-33
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   28 SAWATEPAVDYESTAFYLEGDTLDACGGHATTEGWYHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEMRV 285
            SAWA +  V+YE TAFYLE DT D CGGHAT  G YHYHGT GCL+EQ     G    +HSP LGWSYDGFP+YG LGP G+EM++
Sbjct:  140 SAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQA----GAVKGEHSPVLGWSYDGFPIYGQLGPGGVEMKM 221          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.780e-31
Identity = 54/86 (62.79%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   28 SAWATEPAVDYESTAFYLEGDTLDACGGHATTEGWYHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEMRV 285
            SAWA +   +YE TAFYLE DTLD CGGHAT  G YHYH T GCL+EQ     G    +HSP LGWSYDGFP+YG LGP G+EM++
Sbjct:  155 SAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQA----GAVAGEHSPLLGWSYDGFPIYGQLGPGGVEMKM 236          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.290e-29
Identity = 50/88 (56.82%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   16 APYNSAWATEPAVDYESTAFYLEGDTLDACGGHATTEGWYHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEM 279
            A Y+S      A  Y + A  L GDT D CGG  T +G YHYH  PGCL+EQ MK + LT  DHSP LGW+YDGFP+YG LGP G+EM
Sbjct:    7 AVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEM 94          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: R1DZX8_EMIHU (EF-hand domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZX8_EMIHU)

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-14
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   64 STAFYLEGDTLDACGGHAT--TEGW-YHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEM 279
            S A   EG+T D CGGH++  + G+ YHYH  P CL  Q+    G  +  HSP +GW YDGFP+YG  GPDG++M
Sbjct:  467 SNAVTAEGETFDRCGGHSSGSSAGFQYHYHIPPTCLLAQL----GQYIGQHSPQVGWMYDGFPVYGPFGPDGVQM 537          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.540e-13
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   91 TLDACGGHATTEGWYHYHGTPGCLEEQVMKGE--GLTMSD-HSPFLGWSYDGFPMYGHLGPDGIEMR 282
            + D C GH+T  G YHYH  P CL  Q       G T+++ HSP +GW+ DGFP+YG LGP G+E+R
Sbjct:  162 SFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEIR 228          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: R1DKM5_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKM5_EMIHU)

HSP 1 Score: 72.4 bits (176), Expect = 8.790e-13
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   82 EGDTLDACGGHATT-----EGWYHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEMRVSS 291
            E  + D CGGHA        G YHYH  P CLE Q+    G     HSP +GWS DGFP+YG LGP G+ M  ++
Sbjct:  129 EWTSFDFCGGHARCLAFECNGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTMEHTA 199          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: A0A7S3ZWN8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWN8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.960e-12
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   91 TLDACGGHATTEGWYHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEMR 282
            + D C GH++  G YHYH  P CL  Q  K E      HS  +GW+ DGFP+YG LGP G+E+R
Sbjct:  209 SFDCCSGHSSGTGGYHYHFPPSCLIAQANK-EAPIAGGHSAQIGWAQDGFPIYGPLGPGGVEIR 271          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: A0A8J2X2K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2K6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.030e-12
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   46 PAVD-YESTAFYLEGDTLDACGGHATTEGWYHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEMR 282
            P +D Y+ TA ++   + D C GH++  G YHYH  P CL  Q      ++   HS  +GW+ DGFP+YG LGP G+E+R
Sbjct:  165 PQLDIYDDTAEWI---SFDCCSGHSSGTGGYHYHFPPSCLIAQANADAPIS-DGHSSQIGWAQDGFPIYGPLGPGGVEIR 240          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: A0A7S3JW52_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW52_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.740e-12
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   55 DYESTAFYLEGDTLDACGGHA--TTEGWYHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEMR 282
            DY ++A Y EG + D C  HA  +T   YH H  P CL +Q+    G T ++HSP +G+ +DGFP+YG  GP+GI M+
Sbjct:  151 DYYNSAPYAEGYSFDMCNQHAALSTAASYHSHVPPSCLLDQL----GQTDNEHSPQIGFLFDGFPVYGPRGPNGIMMK 224          
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Match: A0A8J2X5K3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5K3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.080e-11
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   91 TLDACGGHATTEGWYHYHGTPGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEMR 282
            + D C GH+  +  YHYH  P CL  Q  K   ++   HS  +GW+ DGFP+YG LGP G+E+R
Sbjct:  149 SFDCCTGHSDYDAAYHYHFPPSCLLAQANKAAPIS-DGHSAQVGWAEDGFPIYGPLGPGGVEIR 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167628.4219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP42_9PHAE7.570e-3363.95YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FUL4_ECTSI1.780e-3162.79YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LCJ6_ECTSI1.290e-2956.82YHYH domain-containing protein n=1 Tax=Ectocarpus ... [more]
R1DZX8_EMIHU4.100e-1449.33EF-hand domain-containing protein n=2 Tax=Emiliani... [more]
A0A8J2WVX8_9STRA5.540e-1349.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1DKM5_EMIHU8.790e-1346.67YHYH domain-containing protein n=1 Tax=Emiliania h... [more]
A0A7S3ZWN8_9STRA1.960e-1248.44Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A8J2X2K6_9STRA3.030e-1242.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JW52_9STRA7.740e-1244.87Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2X5K3_9STRA7.080e-1145.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167628contigH-elongata_contig167628:327..1215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue9.7e-28
Seed eggNOG ortholog2880.D8LCJ5
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.6539235-CDS-H-elongata_contig167628:326..5571622929978.6539235-CDS-H-elongata_contig167628:326..557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167628 327..557 +
1691679232.5140417-CDS-H-elongata_contig167628:326..5571691679232.5140417-CDS-H-elongata_contig167628:326..557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167628 327..557 +
1622929978.6691084-CDS-H-elongata_contig167628:1134..12151622929978.6691084-CDS-H-elongata_contig167628:1134..1215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167628 1135..1215 +
1691679232.5234103-CDS-H-elongata_contig167628:1134..12151691679232.5234103-CDS-H-elongata_contig167628:1134..1215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167628 1135..1215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167628.4219.1prot_H-elongata_contig167628.4219.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167628 327..1215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167628.4219.1

>prot_H-elongata_contig167628.4219.1 ID=prot_H-elongata_contig167628.4219.1|Name=mRNA_H-elongata_contig167628.4219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MWVLYAPYNSAWATEPAVDYESTAFYLEGDTLDACGGHATTEGWYHYHGT
PGCLEEQVMKGEGLTMSDHSPFLGWSYDGFPMYGHLGPDGIEMRVSSLFH
RPV*
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mRNA from alignment at H-elongata_contig167628:327..1215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167628.4219.1 ID=mRNA_H-elongata_contig167628.4219.1|Name=mRNA_H-elongata_contig167628.4219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=889bp|location=Sequence derived from alignment at H-elongata_contig167628:327..1215+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGTGCTTTATGCTCCGTATAACAGCGCCTGGGCTACCGAACCCGC CGTAGACTACGAGTCGACTGCTTTCTACCTAGAGGGAGACACCCTAGACG CCTGCGGGGGCCACGCCACGACAGAGGGCTGGTATCACTACCACGGAACG CCCGGGTGTCTCGAGGAGCAGGTCATGAAGGGGGAAGGCCTCACCATGTC GGACCACTCTCCCTTCCTAGGCTGGTCTTACGTGAGTCGTAGGCGGCGTT CGTTCAAACAAGCGTATTTGTAAAAAGGGGTATTGGGGGTCGGGGTGCGT GGGGATAGAATGTTTTGATCAAATTGTATAAGCAGTCGAGACTTCTGCTT TAGGCGACAGGAAAGTTTGTATCCTCCTGGATGGAAAGCGCTGCTTTCTC TCCCTCCCCCCGTATGTTTCTTGAAAGTTTAATCGGGACACATGGTCCCG TGTTATTGCTTACGTAAGTTGTCAACTTCGGAGATCAAAGGGGGATGCCC ATCTCCACCGACGGGGTCTTATATTTCATACTATAAACGCCAAAATATGC GCAAGAGTTCGACACTCATGGTAAAAGTCGTACAACACATTTATTGCTGA TCTTTATAGAGCGATGCATGGGGAGGGCCGTTTTTCCTACGAACTCTATG GTGGAGAAATAGGAGTGTATGGCTAAATCCCCCCCCCCGCTCTTTTGATC ATCTCTCTTTGACTTGATCGTCTCTCTTTGACTTGATCGACACATGCTGC ACGTCGGCCTCCTCTCTCTCTATATATATATATATACTGTATATATGTCG TGTCTCAGGACGGGTTCCCGATGTACGGACACCTCGGGCCCGACGGGATC GAGATGAGGGTAAGCTCTCTTTTCCACCGACCAGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig167628:327..1215+

>mRNA_H-elongata_contig167628.4219.1 ID=mRNA_H-elongata_contig167628.4219.1|Name=mRNA_H-elongata_contig167628.4219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig167628:327..1215+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGTGCTTTATGCTCCGTATAACAGCGCCTGGGCTACCGAACCCGC
CGTAGACTACGAGTCGACTGCTTTCTACCTAGAGGGAGACACCCTAGACG
CCTGCGGGGGCCACGCCACGACAGAGGGCTGGTATCACTACCACGGAACG
CCCGGGTGTCTCGAGGAGCAGGTCATGAAGGGGGAAGGCCTCACCATGTC
GGACCACTCTCCCTTCCTAGGCTGGTCTTACATGTGGGTGCTTTATGCTC
CGTATAACAGCGCCTGGGCTACCGAACCCGCCGTAGACTACGAGTCGACT
GCTTTCTACCTAGAGGGAGACACCCTAGACGCCTGCGGGGGCCACGCCAC
GACAGAGGGCTGGTATCACTACCACGGAACGCCCGGGTGTCTCGAGGAGC
AGGTCATGAAGGGGGAAGGCCTCACCATGTCGGACCACTCTCCCTTCCTA
GGCTGGTCTTACGACGGGTTCCCGATGTACGGACACCTCGGGCCCGACGG
GATCGAGATGAGGGTAAGCTCTCTTTTCCACCGACCAGTGTGAGACGGGT
TCCCGATGTACGGACACCTCGGGCCCGACGGGATCGAGATGAGGGTAAGC
TCTCTTTTCCACCGACCAGTGTGA
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