mRNA_H-elongata_contig167620.4218.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167620.4218.1
Unique NamemRNA_H-elongata_contig167620.4218.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig167620.4218.1 vs. uniprot
Match: D7G2N6_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.640e-23
Identity = 71/150 (47.33%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:    1 VCFTGHSMGGGIAAMASLLIRDRDQHPRARRKHHHPTRRDYRSGCEPQSNSAAFSGGEAGTSVRVGVKSDRSNGVGRGLEDKLGEGTETVPGAPLPSSYSGPVVFSFATPACVSLELACRCRSWVSSIVHADDFVPRLSTVSMELLKEDI 450
            VCFTGHSMGGGIAAMAS+LIRD       R +           G EP S +   +        R G +  R    G G         +   GA L  S  GP V+SFATP+CVSLELA  C  WV S+VH DD +PRLSTVS+ELLKED+
Sbjct:  186 VCFTGHSMGGGIAAMASMLIRDSATR---RLQQXXXXXXXXXQGEEPPSTARKRASSSTNLDHR-GSRKRRGTAAGGG---------KISAGAGLGGS-GGPEVYSFATPSCVSLELARGCEGWVDSVVHGDDAIPRLSTVSLELLKEDM 321
[Close]
BLAST of mRNA_H-elongata_contig167620.4218.1 vs. uniprot
Match: A0A6H5KTE0_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.830e-20
Identity = 67/154 (43.51%), Postives = 78/154 (50.65%), Query Frame = 1 
Query:    1 VCFTGHSMGGGIAAMASLLIRD----RDQHPRARRKHHHPTRRDYRSGCEPQSNSAAFSGGEAGTSVRVGVKSDRSNGVGRGLEDKLGEGTETVPGAPLPSSYSGPVVFSFATPACVSLELACRCRSWVSSIVHADDFVPRLSTVSMELLKEDI 450
            VCFTGHSMGGGIAAMAS+LIRD    R Q                  G EP S +            R    ++  +   R                 L  S  GP V+SFATP+CVSLELA  C  WV S+VH DD +PRLSTVS+ELLKED+
Sbjct:  202 VCFTGHSMGGGIAAMASMLIRDSASRRLQQXXXXXXXXXXXXXXXXXGGEPPSTARK----------RASSXTNLDHRGSRXXXXXXXXXXXXXXXXXLGGS-GGPEVYSFATPSCVSLELARGCEGWVDSVVHGDDAIPRLSTVSLELLKEDM 344
[Close]
BLAST of mRNA_H-elongata_contig167620.4218.1 vs. uniprot
Match: A0A835Z4C2_9STRA (Lipase_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.490e-6
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  319 FATPACVSLELACRCRSWVSSIVHADDFVPRLSTVSMELLKED 447
            FATP+CVSL LA  C  +V+++VHADD+VPRLS +++  L++D
Sbjct:  270 FATPSCVSLSLARACEGYVTTLVHADDWVPRLSALALNRLEQD 312
[Close]
BLAST of mRNA_H-elongata_contig167620.4218.1 vs. uniprot
Match: F0WJ61_9STRA (Uncharacterized protein AlNc14C118G6592 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJ61_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.880e-5
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  319 FATPACVSLELACRCRSWVSSIVHADDFVPRLSTVSMELLKE 444
            FATPAC++LELA  CRS+V++I+H DD +PRL   S+  L+E
Sbjct:   57 FATPACITLELARACRSFVTTIIHGDDCIPRLHQQSLLRLQE 98
[Close]
BLAST of mRNA_H-elongata_contig167620.4218.1 vs. uniprot
Match: A0A7R9Z2N5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z2N5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 9.850e-5
Identity = 32/69 (46.38%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:  247 LGEGTETVPGAPLPSSYSGPVVFSFATPACVSLE-LACRCRSWVSSIVHADDFVPRLSTVSMELLKEDI 450
            LG GT  V G  L S +      S+  P CV  E LA  C  +V+S VH DD VPRLS  SME L++D+
Sbjct:  722 LGAGTAAVLGLMLRSKHPTLRCLSYEPPGCVFSEGLARSCAEYVTSFVHNDDVVPRLSLRSMEHLRDDV 790
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167620.4218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G2N6_ECTSI1.640e-2347.33Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KTE0_9PHAE3.830e-2043.51Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z4C2_9STRA2.490e-655.81Lipase_3 domain-containing protein n=1 Tax=Tribone... [more]
F0WJ61_9STRA1.880e-557.14Uncharacterized protein AlNc14C118G6592 n=1 Tax=Al... [more]
A0A7R9Z2N5_9STRA9.850e-546.38Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167620contigH-elongata_contig167620:529..1092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue3.1e-16
Seed eggNOG ortholog2880.D7G2N6
KEGG koko:K13806
KEGG Pathwayko04723,ko04745,ko04925,map04723,map04745,map04925
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
EggNOG OGsKOG2088@1,KOG2088@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167620.4218.1prot_H-elongata_contig167620.4218.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167620 529..1071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.5844438-CDS-H-elongata_contig167620:528..9051622929978.5844438-CDS-H-elongata_contig167620:528..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167620 529..905 -
1691679232.486322-CDS-H-elongata_contig167620:528..9051691679232.486322-CDS-H-elongata_contig167620:528..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167620 529..905 -
1622929978.5974476-CDS-H-elongata_contig167620:1019..10711622929978.5974476-CDS-H-elongata_contig167620:1019..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167620 1020..1071 -
1691679232.4982724-CDS-H-elongata_contig167620:1019..10711691679232.4982724-CDS-H-elongata_contig167620:1019..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167620 1020..1071 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.6132324-UTR-H-elongata_contig167620:1071..10921622929978.6132324-UTR-H-elongata_contig167620:1071..1092Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167620 1072..1092 -
1691679232.5058475-UTR-H-elongata_contig167620:1071..10921691679232.5058475-UTR-H-elongata_contig167620:1071..1092Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167620 1072..1092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167620.4218.1

>prot_H-elongata_contig167620.4218.1 ID=prot_H-elongata_contig167620.4218.1|Name=mRNA_H-elongata_contig167620.4218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MGGGIAAMASLLIRDRDQHPRARRKHHHPTRRDYRSGCEPQSNSAAFSGG
EAGTSVRVGVKSDRSNGVGRGLEDKLGEGTETVPGAPLPSSYSGPVVFSF
ATPACVSLELACRCRSWVSSIVHADDFVPRLSTVSMELLKEDI
back to top

mRNA from alignment at H-elongata_contig167620:529..1092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167620.4218.1 ID=mRNA_H-elongata_contig167620.4218.1|Name=mRNA_H-elongata_contig167620.4218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=564bp|location=Sequence derived from alignment at H-elongata_contig167620:529..1092- (Himanthalia elongata Himel1 dioecious)
GTGTGCTTCACGGGCCACAGCATGGGCGGAGGCATCGCGGCGATGGCATC
TCTTCTCATCCGAGATCGCGATCGTCGACTCATGAAAGGCGCAGACCAAT
CGACCGGCACAGGAGCAGCAGCAGCAGCAGCAACAACAAAAATAAATGAA
GGGAAACTAAAACAAGGAGAGCTTCCGGAGCACCCAGAGCATCCCAGGGC
GCGTAGAAAGCATCATCATCCCACTCGACGCGATTATCGCAGTGGGTGCG
AGCCGCAATCAAACTCCGCGGCGTTTTCCGGGGGGGAAGCGGGAACGTCT
GTGCGAGTCGGCGTGAAGAGCGACAGGAGCAACGGCGTGGGGAGAGGCCT
GGAGGATAAGTTGGGGGAGGGAACGGAAACGGTCCCAGGAGCGCCATTGC
CCTCGTCCTACAGCGGGCCAGTGGTGTTCTCTTTCGCGACTCCGGCGTGC
GTCTCCCTAGAGCTGGCCTGCAGGTGTCGGTCGTGGGTCTCTTCCATCGT
TCACGCGGACGACTTCGTGCCGAGGCTGAGCACGGTGTCCATGGAGCTCT
TGAAGGAGGATATC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig167620:529..1092-

>mRNA_H-elongata_contig167620.4218.1 ID=mRNA_H-elongata_contig167620.4218.1|Name=mRNA_H-elongata_contig167620.4218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig167620:529..1092- (Himanthalia elongata Himel1 dioecious)
ATGGGCGGAGGCATCGCGGCGATGGCATCTCTTCTCATCCGAGATCGCGA
TCATGGGCGGAGGCATCGCGGCGATGGCATCTCTTCTCATCCGAGATCGC
GATCAGCATCCCAGGGCGCGTAGAAAGCATCATCATCCCACTCGACGCGA
TTATCGCAGTGGGTGCGAGCCGCAATCAAACTCCGCGGCGTTTTCCGGGG
GGGAAGCGGGAACGTCTGTGCGAGTCGGCGTGAAGAGCGACAGGAGCAAC
GGCGTGGGGAGAGGCCTGGAGGATAAGTTGGGGGAGGGAACGGAAACGGT
CCCAGGAGCGCCATTGCCCTCGTCCTACAGCGGGCCAGTGGTGTTCTCTT
TCGCGACTCCGGCGTGCGTCTCCCTAGAGCTGGCCTGCAGGTGTCGGTCG
TGGGTCTCTTCCATCGTTCACGCGGACGACTTCGTGCCGAGGCTGAGCAC
GGTGTCCATGGAGCTCTTGAAGGAGGATATCAGCATCCCAGGGCGCGTAG
AAAGCATCATCATCCCACTCGACGCGATTATCGCAGTGGGTGCGAGCCGC
AATCAAACTCCGCGGCGTTTTCCGGGGGGGAAGCGGGAACGTCTGTGCGA
GTCGGCGTGAAGAGCGACAGGAGCAACGGCGTGGGGAGAGGCCTGGAGGA
TAAGTTGGGGGAGGGAACGGAAACGGTCCCAGGAGCGCCATTGCCCTCGT
CCTACAGCGGGCCAGTGGTGTTCTCTTTCGCGACTCCGGCGTGCGTCTCC
CTAGAGCTGGCCTGCAGGTGTCGGTCGTGGGTCTCTTCCATCGTTCACGC
GGACGACTTCGTGCCGAGGCTGAGCACGGTGTCCATGGAGCTCTTGAAGG
AGGATATC
back to top