mRNA_H-elongata_contig167603.4217.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167603.4217.1
Unique NamemRNA_H-elongata_contig167603.4217.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig167603.4217.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.850e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    7 GITLLGQGGGGFYKKQDLGWFLPHKPHLLSVQNPHDPSIDVASNSFKV 150
            GITLLG+GGGGFY K+D GWF    P  LS+QNPH+ ++D  SNS+KV
Sbjct:  400 GITLLGEGGGGFYNKRDTGWFNESHPFRLSMQNPHETNVDTGSNSYKV 447
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BLAST of mRNA_H-elongata_contig167603.4217.1 vs. uniprot
Match: A0A6G0W652_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W652_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.250e-7
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   10 ITLLGQGGGGFYKKQDLGWFLPHKPHLLSVQNPHDPSIDVASNSFKV 150
            +T+    GG + KK DL W    +P LLS++NPHD ++DV SNSF++
Sbjct:  343 LTISVSNGGAYLKKTDLNWKNYQRPELLSMENPHDRTLDVGSNSFEI 389
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BLAST of mRNA_H-elongata_contig167603.4217.1 vs. uniprot
Match: A0A1V9YK13_9STRA (Poly(A) RNA polymerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YK13_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.440e-7
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   10 ITLLGQGGGGFYKKQDLGWFLPHKPHLLSVQNPHDPSIDVASNSFKV 150
            + L  + GG ++ K +  W  P +P LL V+NPHDPS DVASNS+ +
Sbjct:  339 VGLSVRNGGAYFMKDERDWHNPDRPFLLCVENPHDPSHDVASNSYDI 385
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BLAST of mRNA_H-elongata_contig167603.4217.1 vs. uniprot
Match: A0A1V9ZX42_9STRA (Poly(A) RNA polymerase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX42_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.910e-5
Identity = 19/50 (38.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 QAGITLLGQGGGGFYKKQDLGWFLPHKPHLLSVQNPHDPSIDVASNSFKV 150
            Q+ + +  + GG ++ K +  W   ++P +L V+NPHDPS DVA+NS+ +
Sbjct:  321 QSTVGICVRNGGSYFMKDERDWRDANRPFMLCVENPHDPSHDVAANSYDI 370
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BLAST of mRNA_H-elongata_contig167603.4217.1 vs. uniprot
Match: T0R0R1_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R0R1_SAPDV)

HSP 1 Score: 48.5 bits (114), Expect = 3.570e-5
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   10 ITLLGQGGGGFYKKQDLGWFLPHKPHLLSVQNPHDPSIDVASNSFKV 150
            + L  + GG ++ K++  W    +P LL V+NPHDPS DVA+NS+ +
Sbjct:  323 VGLSVRNGGSYFMKEERDWRDASRPFLLCVENPHDPSHDVAANSWDI 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167603.4217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K966_9PHAE1.850e-1362.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6G0W652_9STRA3.250e-746.81Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YK13_9STRA4.440e-746.81Poly(A) RNA polymerase n=1 Tax=Achlya hypogyna Tax... [more]
A0A1V9ZX42_9STRA1.910e-538.00Poly(A) RNA polymerase n=1 Tax=Thraustotheca clava... [more]
T0R0R1_SAPDV3.570e-542.55Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167603contigH-elongata_contig167603:662..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_006750.1
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.5474014-CDS-H-elongata_contig167603:661..8111622929978.5474014-CDS-H-elongata_contig167603:661..811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167603 662..811 -
1691679232.4774575-CDS-H-elongata_contig167603:661..8111691679232.4774575-CDS-H-elongata_contig167603:661..811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167603 662..811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167603.4217.1prot_H-elongata_contig167603.4217.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167603 662..811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167603.4217.1

>prot_H-elongata_contig167603.4217.1 ID=prot_H-elongata_contig167603.4217.1|Name=mRNA_H-elongata_contig167603.4217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
QAGITLLGQGGGGFYKKQDLGWFLPHKPHLLSVQNPHDPSIDVASNSFKV
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mRNA from alignment at H-elongata_contig167603:662..811-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167603.4217.1 ID=mRNA_H-elongata_contig167603.4217.1|Name=mRNA_H-elongata_contig167603.4217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig167603:662..811- (Himanthalia elongata Himel1 dioecious)
CAAGCAGGTATTACGCTTTTAGGTCAAGGAGGGGGAGGGTTCTACAAGAA
GCAGGATCTCGGGTGGTTTTTACCCCACAAGCCGCACCTCCTGAGCGTGC
AAAACCCGCACGATCCGAGCATCGACGTCGCCTCGAACTCGTTCAAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig167603:662..811-

>mRNA_H-elongata_contig167603.4217.1 ID=mRNA_H-elongata_contig167603.4217.1|Name=mRNA_H-elongata_contig167603.4217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig167603:662..811- (Himanthalia elongata Himel1 dioecious)
CAAGCAGGTATTACGCTTTTAGGTCAAGGAGGGGGAGGGTTCTACAAGAA
GCAGGATCTCGGGTGGTTTTTACCCCACAAGCCGCACCTCCTGAGCGTGC
AAAACCCGCACGATCCGAGCATCGACGTCGCCTCGAACTCGTTCAAGGTT
CAAGCAGGTATTACGCTTTTAGGTCAAGGAGGGGGAGGGTTCTACAAGAA
GCAGGATCTCGGGTGGTTTTTACCCCACAAGCCGCACCTCCTGAGCGTGC
AAAACCCGCACGATCCGAGCATCGACGTCGCCTCGAACTCGTTCAAGGTT
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