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Homology
BLAST of mRNA_H-elongata_contig16759.4215.1 vs. uniprot
Match: A0A6H5KVG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG9_9PHAE) HSP 1 Score: 236 bits (601), Expect = 6.400e-61 Identity = 110/153 (71.90%), Postives = 122/153 (79.74%), Query Frame = 1
Query: 796 RRGHAERPGPAHSVEEYLANTQRGREAVASISVGTAFWIKFSDTKEAWLECGVVKKVHQKSAVPYEVEWRPYDSSGCDLALNPKKRVALTPRLFVGKPDDFEPTVEGDPPAGTAPRGEFKVTTKKHLLTVPPIGSWCIVKDDQPWGSLGPFAF 1254
RRG +E PGPAHSVEEYLANT++G EAVASI GT FWIKFSDT+EAW+EC VV KVH +SAVPYEV WRP+DS GCDLALN KKR+ALTPRLF+ P + E E DPPAGTA RG F+ KK LTVPPIGSWCIVK DQPWG L PF +
Sbjct: 1588 RRGQSESPGPAHSVEEYLANTKKGTEAVASIKEGTVFWIKFSDTREAWVECAVVTKVHPRSAVPYEVTWRPFDSGGCDLALNAKKRIALTPRLFMSSPANPELAGENDPPAGTARRGGFQPARKKFKLTVPPIGSWCIVKPDQPWGQLDPFTY 1740
BLAST of mRNA_H-elongata_contig16759.4215.1 vs. uniprot
Match: D7G2E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E8_ECTSI) HSP 1 Score: 235 bits (600), Expect = 7.530e-61 Identity = 109/153 (71.24%), Postives = 123/153 (80.39%), Query Frame = 1
Query: 796 RRGHAERPGPAHSVEEYLANTQRGREAVASISVGTAFWIKFSDTKEAWLECGVVKKVHQKSAVPYEVEWRPYDSSGCDLALNPKKRVALTPRLFVGKPDDFEPTVEGDPPAGTAPRGEFKVTTKKHLLTVPPIGSWCIVKDDQPWGSLGPFAF 1254
RRG +E PGPAHSVEEYLANT++G EAVASI GT FWIKFSDT+EAW+EC VV KV+ +SAVPYEV WRP+DS GCDLALN KKR+ALTPRLFV P + EP E DPPAGTA +G F+ KK LTVPPIGSWCIVK D+PWG L PF +
Sbjct: 1335 RRGQSESPGPAHSVEEYLANTKKGTEAVASIKEGTVFWIKFSDTREAWVECAVVSKVYPRSAVPYEVTWRPFDSGGCDLALNAKKRIALTPRLFVSSPANPEPAGENDPPAGTARQGGFQPARKKFKLTVPPIGSWCIVKPDRPWGQLEPFTY 1487
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-24_001720.1 |
| Exons | 4 |
| Model size | 2520 |
| Cds size | 1257 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929977.9904118-CDS-H-elongata_contig16759:1629..2009 | 1622929977.9904118-CDS-H-elongata_contig16759:1629..2009 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16759 1630..2009 + |
| 1691679232.1551912-CDS-H-elongata_contig16759:1629..2009 | 1691679232.1551912-CDS-H-elongata_contig16759:1629..2009 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16759 1630..2009 + |
| 1622929978.0116448-CDS-H-elongata_contig16759:2639..3160 | 1622929978.0116448-CDS-H-elongata_contig16759:2639..3160 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16759 2640..3160 + |
| 1691679232.164685-CDS-H-elongata_contig16759:2639..3160 | 1691679232.164685-CDS-H-elongata_contig16759:2639..3160 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16759 2640..3160 + |
| 1622929978.02852-CDS-H-elongata_contig16759:3906..3968 | 1622929978.02852-CDS-H-elongata_contig16759:3906..3968 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16759 3907..3968 + |
| 1691679232.175451-CDS-H-elongata_contig16759:3906..3968 | 1691679232.175451-CDS-H-elongata_contig16759:3906..3968 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16759 3907..3968 + |
| 1622929978.0461996-CDS-H-elongata_contig16759:4488..4782 | 1622929978.0461996-CDS-H-elongata_contig16759:4488..4782 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16759 4489..4782 + |
| 1691679232.184581-CDS-H-elongata_contig16759:4488..4782 | 1691679232.184581-CDS-H-elongata_contig16759:4488..4782 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig16759 4489..4782 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929978.0662284-UTR-H-elongata_contig16759:4782..6045 | 1622929978.0662284-UTR-H-elongata_contig16759:4782..6045 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16759 4783..6045 + |
| 1691679232.193688-UTR-H-elongata_contig16759:4782..6045 | 1691679232.193688-UTR-H-elongata_contig16759:4782..6045 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig16759 4783..6045 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16759.4215.1 >prot_H-elongata_contig16759.4215.1 ID=prot_H-elongata_contig16759.4215.1|Name=mRNA_H-elongata_contig16759.4215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=419bp
APDGVLRAPEAPLSPAPSFGVAASSRDSENGCDPVNSTNGDTSNGCKAAN GGSTSGSTRDAVKSGDPANSGGTGGGGGKTDGGDSSTITITTEAARALSP PRERPSPPRIACPATPSTPNHFKWPPSPIEVSPSLATPARSSSATLSVDA ISPAPETPTLANDAVASRLVSGTPNDDVAAIATGELTTAKTIPHEESSPR GAVDPRRDDVSYSRSVVFASPVRGKRILVPPAPAEKDAGKSTTPKKTKRR DSSNNAVAPRPLKSSRRGHAERPGPAHSVEEYLANTQRGREAVASISVGT AFWIKFSDTKEAWLECGVVKKVHQKSAVPYEVEWRPYDSSGCDLALNPKK RVALTPRLFVGKPDDFEPTVEGDPPAGTAPRGEFKVTTKKHLLTVPPIGS WCIVKDDQPWGSLGPFAF* back to topmRNA from alignment at H-elongata_contig16759:1630..6045+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig16759.4215.1 ID=mRNA_H-elongata_contig16759.4215.1|Name=mRNA_H-elongata_contig16759.4215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4416bp|location=Sequence derived from alignment at H-elongata_contig16759:1630..6045+ (Himanthalia elongata Himel1 dioecious) GCACCGGACGGCGTCCTGCGCGCGCCGGAAGCTCCGCTCTCTCCCGCACC
AAGCTTCGGCGTCGCGGCAAGTAGCAGGGACTCGGAGAACGGCTGCGACC
CGGTAAACAGCACCAACGGCGATACATCTAATGGTTGTAAGGCGGCGAAT
GGCGGTAGCACGTCAGGAAGCACCCGCGATGCGGTAAAAAGCGGCGACCC
GGCGAACAGCGGCGGTACGGGGGGAGGCGGTGGCAAGACGGACGGAGGCG
ACTCAAGCACGATCACGATCACTACCGAGGCGGCTCGAGCACTATCGCCC
CCGAGGGAACGGCCGTCACCACCTCGTATCGCGTGCCCGGCAACCCCGTC
CACGCCAAACCATTTCAAATGGCCACCATCGTGAGTATTTCGCGATATCT
GGCACCGCCCGCGCAGAACGCCAGGGTGTGGCAGCACTAAAGCTACGTAT
TTTATTTGTCGTTGGGCGTGGGCTAGATCTTGATGTGGACGTCGCCGTCG
CCGGAACGCGCCCGCTCGGTGGCTTTTATATTTTGAACTCGAGCCAGTCG
ACGTATATTGTCCGCCGACGAGGTCAGTGGGCAGTACAAGGATAGACTTG
GGTTGAAATTTCTTGTGTATTGTAAACTTCTCCGCTTAGAGGCTTTGGGC
CTATTTTGAAAAAAAATCGCCTACGAGGCGTTTCAAACATTTGCATATTG
AGTGAAGGTTTTTGTGGGAGCTCCGTGTTCGCACTTCTTCCGCCGCCGGC
GCGTGACGACAGGGACGCTGGAAAAAGAAACGGCAGCTACCTCTTACCAT
ATCTTGGGTAAAAAAAGAGAGAGGTCTTGCACGCAAGGAGCGCTCGCCGC
CGCACGACCACCCGTTAGTCTTACATCCTGCTGCCTTTCGCGCGTCATTA
GCTTTTTTTTTTTGTCGTTGAACCCTTACCCAGCAGCGCGGTCTTCGATC
CCCTTTCGGCTCGTTATCGCGATTGCCCGCAACCCGCAAAAACCGTGTTT
TTCTCCCCAGGCCGATTGAAGTGTCCCCCTCTCTGGCAACACCGGCGAGG
AGCTCTTCCGCCACGTTGTCTGTGGACGCGATAAGCCCTGCCCCGGAGAC
GCCCACGCTCGCGAACGACGCCGTCGCATCGCGCCTTGTCTCGGGCACTC
CTAATGATGACGTGGCGGCGATCGCAACCGGCGAATTGACGACGGCGAAA
ACGATCCCCCACGAGGAGTCGAGTCCGCGAGGCGCCGTCGATCCGAGGCG
CGACGACGTCTCGTATTCGCGTTCCGTCGTTTTCGCGAGTCCCGTCCGCG
GGAAAAGGATTTTGGTGCCACCGGCTCCGGCGGAAAAGGACGCTGGCAAA
AGCACTACCCCAAAGAAAACCAAGCGGCGAGACTCGAGCAATAATGCCGT
CGCGCCCCGACCGCTGAAGTCATCTCGAAGGGGCCATGCGGAGAGGCCCG
GTCCGGCGCATTCCGTTGAGGAGTACCTGGCAAACACTCAGAGGGGGAGG
GAAGCCGTGGCATCCATTTCTGTGGGCACAGGTAGGTGGACCGGCGGAGC
GTAGCCCATCAACTTGTTTTGTCTTTTTCGCCAGGGTTTTGAATTGGGGG
AATAGTGTTTTACTCGCGTGAGCGTGTGTTTGCGCGGGCGAAATTTGCTA
AGTGGTATCACGCAAGATATCGCATCGGGCCAAGGTGAAAAGAACTGGCG
GTTTGGAAACGCGTCTTTGCTTGTTTAGATGGCTTTGCGGTGATGTGCTA
GTATTACGTGGGGAACCACGGCAACGTTTGATGTGATGGCTAGCTACTTC
CCCGACATCGCCTCGTAAGAATGATCTTTATTTTTCTTTCTTGAAGAAAG
CGCGATCTCGTTTATCTTTATCCGTAATAAAAAATACTTTGTGGATATAT
ATTTCAAGCTCTCACGGTAGTTAATGTTTTCCAACGAAACGATCTACCAC
CCCCCTCACAAGAAGCCCCATGTTCCCATGGTTCTATTAAGATGTTGGTA
TCTAGGAAGCCGGAGCAAGCTTGGGCGGTTCTATCACGATCTTTGCAGAG
GTCGACCAGGCGGCAAGGATTATTTTTTACTTTTCTTACTTTTTCCTAAG
GGCGAGTCAATCCGCTTCCATATATTTGAGGCATTGATTGCCGCATCACA
AGTACGCACATATTACAAATAATGTATATATGACCCGTCATGCGGGGAAG
TGGAATCTCCGGCACGCCCACAGAAACGATATCCTCTGTTCTCTGTCCTC
TGTACTCTGTACTCTGCTCTTTGCTAGCGTTTTGGATCAAGTTCAGCGAC
ACCAAGGAGGCGTGGCTAGAGTGTGGCGTGGTGAAAAAGGTATTGCAAGA
ACCAGATATAGTACTTCATTATATAGTTAGTGTACAGTAGATCCTGGTGC
TGGAACGAGTACTGAATGTACCTTTTCTCGAGTTCAATCATAAAACTCCC
CCCTCGCGGTACGAGTAGTGTAGTGAGCCGTAAGGAGGCCGTGCCCTTGT
CGCGAGCTCCATGTCGGCGATTGAGTCGTTTTTTCTATGTTTATTTCTTT
CTTGTTTTTTGTAGCAGGGGAGGAAAAACAAATAGGTACCTAATTCCGCC
TCTCATGAAAGCACTGCCCATTCCGCCTTGCGTAGTCAGATCGTGCCGGC
AACTAATCGCCTCGGGTGACGTTCCCGAAAAGTTCTGTCAAATGCCGAGC
GTTTTGAAGAGCTCTTACCGAGTAACCTCCTCAGAGAGGCCGGGACCCCC
CCCCCGGAAGAGCTCGTCATTTTCATGACGTTGAGAGTAACCCTCCGTGT
AGCTTGTTTCATAATCCGACCTTACCCGCCTGAGGTATGGCTGACGTATG
TCCGTCCAGGTTCACCAGAAGAGCGCGGTGCCGTACGAGGTGGAGTGGAG
ACCGTACGACAGCAGCGGGTGTGATCTCGCCTTGAATCCGAAAAAACGAG
TCGCGCTGACGCCGCGGCTCTTCGTCGGCAAGCCCGATGACTTCGAGCCG
ACCGTCGAGGGCGACCCCCCGGCGGGCACGGCGCCCCGGGGTGAATTCAA
GGTCACGACGAAGAAGCACCTTCTGACTGTGCCGCCAATAGGCAGCTGGT
GCATCGTGAAGGATGATCAGCCGTGGGGCAGCCTGGGTCCCTTCGCGTTC
TGACGGCTCGTGCCAGCGAAGTGCGCGCGCAGGACGCGATTGAGATCGAG
ATCAAGAACCCGCGCGCGATGTTTACCGCTGTCGAATTTACCCTCCCCCG
GAAGCATGTCTGCTGTACAATTTGGCGACGGAGCTTCGATTCGTGAAGTG
AAGTCGTACGCGTGAGGAGAATGAAATGCCGCCCCCGCTTCGCGCAGTCT
CCACGCAAGCGCACAACAGGCGTATAAAAAGAGAGCTGTAGATGTGACTT
TTACCATTTTTCTCAAACCTCCGATCGTTCGATGATGTGCGTGGACTCAA
GCTGCTCCGGCGCACGCTCCTTGTACATAGTAATAAGCGTGATTATGAAT
TTTAAAGAGGTGCCGGTAGAGCTCGAACGTGTTCGAAATGACTACTTGCT
GTGATACAAGTTCGGCCACATGAGAGAGACTCGGCGCCGAGGATGCGGGG
ACCATGGCTTTGCTTTTCAAGGCGTGAACCTTTAGATAGCGCCCACAATA
TTAGGAGGGCCTGCGCAGCTGTGTCGTTTTCCCTTCTATTTTTGTGTGCC
TTTTTCTTTGTATATTTGTGTGATACAGCGTTTGTACGCTGCCGGCGACA
AAAGCCGTGGGTTATCCGGTAGTCGTCAGTAATGCGAGCTCCGTTGCGCT
AGTGGAGTGTGACGCAGTCCTATATATATATATAGATAGATATGTAACTT
CGCTGCTGACCACGAGAATGGCGAGACTGCCAAAAGGCCCAGGGCCAGCG
AGGTCAACTGTGCGAATTCAATTTAGCTCAAAGTAACAATGCGTGTGTAG
AGTATCGTGGGAGTTAGAGCTCGTGCCTGCAAAGTGTTTGGTCGCGAACG
ATCCGGATGGTTGTAGTTTGGGTTCGGCGAGGGGGGCATGTTTCGTACGG
TTAGGTTAGCATAGTTATTTATCGCTTGTGTGCCGAGGTGGGCATCAATC
AGTCACCGACTTTAGGTACGTTTTGACTGGTTAACGGGGAGGGAAAATCA
TCAGCTTCTGATGCGTTGATGGTGTGTGTTGTGTATGTATTTATTAAATT
GCACATAACTCCGCAATCCGATCCTTTCATGCTTGCATTCAGGGGTGTAA
AAGATTCCCGAGCGGTTCGGGGCTCCGTAGGAGTCGAGCGCCGCAGGCTA
AGCTCCCCGCAGGGGCCACCGGACGCAAACTGTTTTGGCCCAAAAGCGAT
TTCCCTTCACCTTGCCTTCATTTCCGGGCACCCGAACCACTTCCTGAAAT
GGTAGTTTTGTAGGGT back to topCoding sequence (CDS) from alignment at H-elongata_contig16759:1630..6045+ >mRNA_H-elongata_contig16759.4215.1 ID=mRNA_H-elongata_contig16759.4215.1|Name=mRNA_H-elongata_contig16759.4215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2514bp|location=Sequence derived from alignment at H-elongata_contig16759:1630..6045+ (Himanthalia elongata Himel1 dioecious) GCACCGGACGGCGTCCTGCGCGCGCCGGAAGCTCCGCTCTCTCCCGCACC AAGCTTCGGCGTCGCGGCAAGTAGCAGGGACTCGGAGAACGGCTGCGACC CGGTAAACAGCACCAACGGCGATACATCTAATGGTTGTAAGGCGGCGAAT GGCGGTAGCACGTCAGGAAGCACCCGCGATGCGGTAAAAAGCGGCGACCC GGCGAACAGCGGCGGTACGGGGGGAGGCGGTGGCAAGACGGACGGAGGCG ACTCAAGCACGATCACGATCACTACCGAGGCGGCTCGAGCACTATCGCCC CCGAGGGAACGGCCGTCACCACCTCGTATCGCGTGCCCGGCAACCCCGTC CACGCCAAACCATTTCAAATGGCCACCATCGCACCGGACGGCGTCCTGCG CGCGCCGGAAGCTCCGCTCTCTCCCGCACCAAGCTTCGGCGTCGCGGCAA GTAGCAGGGACTCGGAGAACGGCTGCGACCCGGTAAACAGCACCAACGGC GATACATCTAATGGTTGTAAGGCGGCGAATGGCGGTAGCACGTCAGGAAG CACCCGCGATGCGGTAAAAAGCGGCGACCCGGCGAACAGCGGCGGTACGG GGGGAGGCGGTGGCAAGACGGACGGAGGCGACTCAAGCACGATCACGATC ACTACCGAGGCGGCTCGAGCACTATCGCCCCCGAGGGAACGGCCGTCACC ACCTCGTATCGCGTGCCCGGCAACCCCGTCCACGCCAAACCATTTCAAAT GGCCACCATCGCCGATTGAAGTGTCCCCCTCTCTGGCAACACCGGCGAGG AGCTCTTCCGCCACGTTGTCTGTGGACGCGATAAGCCCTGCCCCGGAGAC GCCCACGCTCGCGAACGACGCCGTCGCATCGCGCCTTGTCTCGGGCACTC CTAATGATGACGTGGCGGCGATCGCAACCGGCGAATTGACGACGGCGAAA ACGATCCCCCACGAGGAGTCGAGTCCGCGAGGCGCCGTCGATCCGAGGCG CGACGACGTCTCGTATTCGCGTTCCGTCGTTTTCGCGAGTCCCGTCCGCG GGAAAAGGATTTTGGTGCCACCGGCTCCGGCGGAAAAGGACGCTGGCAAA AGCACTACCCCAAAGAAAACCAAGCGGCGAGACTCGAGCAATAATGCCGT CGCGCCCCGACCGCTGAAGTCATCTCGAAGGGGCCATGCGGAGAGGCCCG GTCCGGCGCATTCCGTTGAGGAGTACCTGGCAAACACTCAGAGGGGGAGG GAAGCCGTGGCATCCATTTCTGTGGGCACAGGCCGATTGAAGTGTCCCCC TCTCTGGCAACACCGGCGAGGAGCTCTTCCGCCACGTTGTCTGTGGACGC GATAAGCCCTGCCCCGGAGACGCCCACGCTCGCGAACGACGCCGTCGCAT CGCGCCTTGTCTCGGGCACTCCTAATGATGACGTGGCGGCGATCGCAACC GGCGAATTGACGACGGCGAAAACGATCCCCCACGAGGAGTCGAGTCCGCG AGGCGCCGTCGATCCGAGGCGCGACGACGTCTCGTATTCGCGTTCCGTCG TTTTCGCGAGTCCCGTCCGCGGGAAAAGGATTTTGGTGCCACCGGCTCCG GCGGAAAAGGACGCTGGCAAAAGCACTACCCCAAAGAAAACCAAGCGGCG AGACTCGAGCAATAATGCCGTCGCGCCCCGACCGCTGAAGTCATCTCGAA GGGGCCATGCGGAGAGGCCCGGTCCGGCGCATTCCGTTGAGGAGTACCTG GCAAACACTCAGAGGGGGAGGGAAGCCGTGGCATCCATTTCTGTGGGCAC AGCGTTTTGGATCAAGTTCAGCGACACCAAGGAGGCGTGGCTAGAGTGTG GCGTGGTGAAAAAGCGTTTTGGATCAAGTTCAGCGACACCAAGGAGGCGT GGCTAGAGTGTGGCGTGGTGAAAAAGGTTCACCAGAAGAGCGCGGTGCCG TACGAGGTGGAGTGGAGACCGTACGACAGCAGCGGGTGTGATCTCGCCTT GAATCCGAAAAAACGAGTCGCGCTGACGCCGCGGCTCTTCGTCGGCAAGC CCGATGACTTCGAGCCGACCGTCGAGGGCGACCCCCCGGCGGGCACGGCG CCCCGGGGTGAATTCAAGGTCACGACGAAGAAGCACCTTCTGACTGTGCC GCCAATAGGCAGCTGGTGCATCGTGAAGGATGATCAGCCGTGGGGCAGCC TGGGTCCCTTCGCGTTCTGAGTTCACCAGAAGAGCGCGGTGCCGTACGAG GTGGAGTGGAGACCGTACGACAGCAGCGGGTGTGATCTCGCCTTGAATCC GAAAAAACGAGTCGCGCTGACGCCGCGGCTCTTCGTCGGCAAGCCCGATG ACTTCGAGCCGACCGTCGAGGGCGACCCCCCGGCGGGCACGGCGCCCCGG GGTGAATTCAAGGTCACGACGAAGAAGCACCTTCTGACTGTGCCGCCAAT AGGCAGCTGGTGCATCGTGAAGGATGATCAGCCGTGGGGCAGCCTGGGTC CCTTCGCGTTCTGA back to top
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