mRNA_H-elongata_contig16750.4210.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16750.4210.1
Unique NamemRNA_H-elongata_contig16750.4210.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: D7FZE7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE7_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 2.470e-123
Identity = 244/541 (45.10%), Postives = 306/541 (56.56%), Query Frame = 1 
Query:    1 LKTAWSEVTKMDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYEEAIKQEEGWSKMVSSFEETLREQELYATSGGGGPCRPLTAASGGATSGKHKAGSAATTTKYSPCLDPL---------LFPMAPATQLDGQGLGRRVGLASILLSEPFAAKIMYRYASDRVPDACRRREILPRDHPTFAPLLQLLELGDAARAMFRADSFGVRAVEEDLMRKVLPCVVALHARAQDAIRRCRKSQRRVSSEDGRCEKVESEGGGNDSAKHDAADEPGFPQDWKEWYKEFPVVRRLTCTMLCRALVEGCDEAAALLMPAAVAAVKRMPDELWLWASLREIL------AGGARGALKTKDGGKAVA------KAGKKIKADPHLL-PETMMHTFTLFSRGLESAACSDAVFGESLKCITSLLPMVTMV-------------------TTPPPGETGKPTGVTI---AVLEEIMDRAVTRAARPPRTPRTGAEVRRVKDALEAVFAKAPSGWREK 1491
            LKTAWS V+KMD    F+ PVTEAIA GY K+IK PMDL T LKKI+ GGY +FGDFD DLKLMW+NCRT+NG GT + +EA++QEE WSK+ +  E  LR QE   T  GG                                             L PMA ATQL+  G+GRRVGLAS+LL+EPFAAK+MYR+AS+R+P+ C  R ILPRDHP +APL+QLL+LG++AR M RA++FGVR V+  + R VLPCVVALHARA                                 A           QDW+ WY + P +RRL CTMLCRA+V G DEAA +LMPAA AAVKRM D+ WLWASL E++      +  A  A   KDGG  VA      K GK+  A P +L PET++    LFS GLE A  +DAVF ++L+ +  LLP+ +                     + P P   GK     +   + LE+++++A  RAARPPR P + AE  R K+A   VFAK+P GW  K
Sbjct:  245 LKTAWSLVSKMDKNKWFKDPVTEAIAEGYHKVIKTPMDLGTILKKIKGGGYPSFGDFDRDLKLMWQNCRTYNGEGTQYNKEALRQEEEWSKISAKIENDLRHQE---TRPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPMAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEVCCERGILPRDHPVYAPLVQLLDLGESARHMLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT--------AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAGVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAAAVAAAPAKDGGGVVAAGVAGKKGGKEKGAVPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGAVAALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANK 774
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: A0A6H5KMY2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY2_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 4.240e-120
Identity = 254/585 (43.42%), Postives = 320/585 (54.70%), Query Frame = 1 
Query:   31 MDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYEEAIKQEEGWSKMVSSFEETLREQELYATSGGGGPCRPLTAASGGATSGKHKAGSAATTTKYSPCLDPL------LFPMAPATQLDGQGLGRRVGLASILLSEPFAAKIMYRYASDRVPDACRRREILPRDHPTFAPLLQLLELGDAARAMFRADSFGVRAVEEDLMRKVLPCVVALHARAQDAIRRCRKSQRRVSSEDGRCEKVESEGGGNDSAKHDAADEPGFPQDWKEWYKEFPVVRRLTCTMLCRALVEGCDEAAALLMPAAVAAVKRMPDELWLWASLREIL-------AGGARGALKTKDGGKAVA------KAGKKIKADPHLL-PETMMHTFTLFSRGLESAACSDAVFGESLKCITSLLPMVTMV------------------TTPPPGETGKPTGVTI---AVLEEIMDRAVTRAARPPRTPRTGAEVRRVKDALEAVFAKAPSGW-------REKFAYNKKK----KTLAXXXXXXXXXXXXXGKAGDGRPPRPPRSFTIKGPKR 1629
            MD    F+ PVTEAIA GY K++K PMDL T LKKI+ GGY +FGDFD DLKLMW+NCRT+NG GT + +EA++QEE WSK+ +  E  LR QE   +                                              L PMA ATQL+  G+GRRVGLAS+LL+EPFAAK+MYR+AS+R+P+AC  R ILPRDHP +APL+QLL+LG++AR M RA++FGVR V+ ++ R VLPCVVALHARA                                             QDW+ WY + P +RRL CTMLCRA+V G DEAAA+LMPAA AAVKRM D+ WLWASL E+        A  A  A    +GG  VA      K GK+    P +L PET++    LFS GLE A  +DAVF ++L+ +  LLP+ +                    + P P   GK     +   + LE+++++A  RAARPPR P + AE  R K+A   V AK+P GW       R K A   +K    K +     XXXXXXXXX     GRP RP    +IKGPKR
Sbjct:    1 MDKNKWFKDPVTEAIAEGYHKVVKTPMDLGTILKKIKGGGYPSFGDFDRDLKLMWQNCRTYNGEGTQYNKEALRQEEEWSKISAKIENDLRHQEARPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPMAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHPVYAPLVQLLDLGESARHMLRANTFGVREVKAEVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXX-------------XXXXXXXXXXXXXAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELAQRSADASAATAAAAAPVNEGGGVVAAGVAGKKCGKEKGTMPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGAVTALLPRSALEDVVNQAAARAARPPRRPLSQAEELRAKEAFAKVLAKSPPGWANKVSEYRAKLAEKSRKGGGGKVVGDGGGXXXXXXXXXXXXXAGRPSRP---ISIKGPKR 569
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: A0A367JUE8_RHIAZ (Bromodomain and PHD finger-containing protein 1 (Fragment) n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367JUE8_RHIAZ)

HSP 1 Score: 91.3 bits (225), Expect = 4.320e-16
Identity = 37/101 (36.63%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:   28 KMDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYEEAIKQEEGWSKMVSSFEETLREQELYATSG 330
            ++D +D+F+HPVTE +APGY+ +I+ PM  S  LK++    Y  F  F+HD+ L+WKNC T+N P T +Y+ A + ++  + +++  +E     E+   +G
Sbjct:    5 ELDKKDIFKHPVTEDVAPGYNDIIQEPMSFSEVLKRLACHFYTDFDTFEHDISLIWKNCMTYNNPDTSYYKLAQRLQKASNSLIAEAKEAYDALEIDRQTG 105
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: A0A8J2X769_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X769_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.100e-14
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:    1 LKTAWSEVTKMDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRK--GGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYE------EAIKQEEGWSKMVSSFEETLREQE 312
            L+  W ++ + D+ DLF  PVT+AIAPGY K IK PMDLST   KI +    Y + G F+ D+KLM +NCR +NGP ++         +A    + W ++ +SF++     E
Sbjct:  257 LEECWKQLQEADSTDLFAFPVTDAIAPGYSKKIKEPMDLSTMRSKILRVHAPYRSIGAFECDIKLMVENCRVYNGPNSILARSLGAARKARALWKAWLQIKASFQDPREVSE 368
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: A0A367KDI8_RHIAZ (NuA3 HAT complex component nto1 n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367KDI8_RHIAZ)

HSP 1 Score: 87.4 bits (215), Expect = 2.630e-14
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 1 
Query:    1 LKTAWSEVTKMDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYEEAIKQEEGWSKMVSSFEETLREQELYATSG 330
            LK     + ++D +D+F+HPVTE +APGY  +I+ PM  S  LK++    Y  F  F+ D+ L+WKNC T+N P T +Y+ A + ++    +++  +E     E+   +G
Sbjct:  615 LKPLVCRLMELDKKDIFKHPVTEDVAPGYSDIIQEPMSFSEVLKRLACHFYTDFDTFERDISLIWKNCMTYNKPDTSYYKLAQRLQKASDSLIARAKEAYDALEIDRQTG 724
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BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: UPI001ED8B089 (uncharacterized protein LOC124158139 isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8B089)

HSP 1 Score: 77.8 bits (190), Expect = 3.110e-11
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   28 KMDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYEEA 246
            + D    F  PVT++IAPGY ++I+RPMD ST  +KI +G Y T G++  D KLM  N   +N P T++Y+ A
Sbjct:  343 RRDPHHFFAWPVTDSIAPGYSRIIRRPMDFSTMKQKIDEGQYATLGEYVEDFKLMCNNAMVYNHPDTIYYKAA 415
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: A0A7M5X9E6_9CNID (Bromo domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X9E6_9CNID)

HSP 1 Score: 77.0 bits (188), Expect = 3.900e-11
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 LKTAWSEVTKMDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYEEAIKQEEGWSKMVSSFEETLREQELYATS 327
            L+     + + D  ++F+ PV++A+APGY K+IK+PMD  T  +KI K  Y +  +   D  LM  N   +NGP T++Y+ A        KM+S   +TL +++++  S
Sbjct:  126 LENLLRNLQRKDVYNIFQFPVSDAVAPGYSKVIKKPMDFMTMSQKIEKDEYTSIEEMKADFLLMCSNAMLYNGPDTIYYKSA-------DKMLSIGLKTLSKEKMHKVS 227
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: A0A1E7FWW3_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWW3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.220e-11
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   49 FRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFN 216
            F +PVT+AIAPGY K+IK+PM + T + KI    YH    ++ D++LM+KNC  +N
Sbjct:    1 FLNPVTDAIAPGYSKVIKKPMSIGTMINKIENNQYHDIKTWEQDVRLMFKNCVDYN 56
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: UPI000A2A9D25 (bromodomain-containing protein 9 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9D25)

HSP 1 Score: 70.9 bits (172), Expect = 9.470e-11
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   22 VTKMDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYEEA 246
            + + D +  F  PV +AIAPGY ++I++PMD ST   KI  G Y T   F  D  LM  N   +N P T++Y+ A
Sbjct:   75 IQRKDVQGFFAFPVNDAIAPGYSRVIEKPMDFSTIRNKIDSGQYTTIEGFRDDFHLMCNNATIYNAPDTIYYKAA 149
[Close]
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Match: A0A8K0JNT4_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JNT4_9TREE)

HSP 1 Score: 75.9 bits (185), Expect = 1.340e-10
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   43 DLFRHPVT--EAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHDLKLMWKNCRTFNGPGTLFYEEAIKQEEGWSKMVSSFEETLREQ 309
            D FR+PV   E  APGY K+IKRP+DLS    K+  G Y     F  DL L+  NC+T+NG G+L +E A++ E+ ++   +  E+TL ++
Sbjct: 1186 DFFRYPVPDDENFAPGYYKIIKRPIDLSAIKHKLSDGQYENRHQFKEDLDLIVHNCKTYNGEGSLVFEAAVEFEKVFTGQWARVEKTLSKK 1276
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16750.4210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZE7_ECTSI2.470e-12345.10Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KMY2_9PHAE4.240e-12043.42Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A367JUE8_RHIAZ4.320e-1636.63Bromodomain and PHD finger-containing protein 1 (F... [more]
A0A8J2X769_9STRA2.100e-1439.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A367KDI8_RHIAZ2.630e-1434.55NuA3 HAT complex component nto1 n=1 Tax=Rhizopus a... [more]
UPI001ED8B0893.110e-1145.21uncharacterized protein LOC124158139 isoform X1 n=... [more]
A0A7M5X9E6_9CNID3.900e-1133.94Bromo domain-containing protein n=1 Tax=Clytia hem... [more]
A0A1E7FWW3_9STRA7.220e-1148.21Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
UPI000A2A9D259.470e-1141.33bromodomain-containing protein 9 n=1 Tax=Exaiptasi... [more]
A0A8K0JNT4_9TREE1.340e-1041.76Uncharacterized protein n=1 Tax=Filobasidium flori... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16750contigH-elongata_contig16750:586..6827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.0
Seed ortholog evalue1.1e-103
Seed eggNOG ortholog2880.D7FZE7
Preferred nameBPTF
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1472@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain and Cofactor of BRCA1 domain protein
Ec32 orthologEc-27_001540.1
Exons6
Model size1629
Cds size1599
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.4216661-UTR-H-elongata_contig16750:585..6151622929977.4216661-UTR-H-elongata_contig16750:585..615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16750 586..615 +
1691679231.9032497-UTR-H-elongata_contig16750:585..6151691679231.9032497-UTR-H-elongata_contig16750:585..615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16750 586..615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.4334295-CDS-H-elongata_contig16750:615..7201622929977.4334295-CDS-H-elongata_contig16750:615..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 616..720 +
1691679231.9238968-CDS-H-elongata_contig16750:615..7201691679231.9238968-CDS-H-elongata_contig16750:615..720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 616..720 +
1622929977.444837-CDS-H-elongata_contig16750:1700..17871622929977.444837-CDS-H-elongata_contig16750:1700..1787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 1701..1787 +
1691679231.935475-CDS-H-elongata_contig16750:1700..17871691679231.935475-CDS-H-elongata_contig16750:1700..1787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 1701..1787 +
1622929977.45866-CDS-H-elongata_contig16750:3404..34941622929977.45866-CDS-H-elongata_contig16750:3404..3494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 3405..3494 +
1691679231.9440715-CDS-H-elongata_contig16750:3404..34941691679231.9440715-CDS-H-elongata_contig16750:3404..3494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 3405..3494 +
1622929977.471958-CDS-H-elongata_contig16750:4769..48221622929977.471958-CDS-H-elongata_contig16750:4769..4822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 4770..4822 +
1691679231.9545486-CDS-H-elongata_contig16750:4769..48221691679231.9545486-CDS-H-elongata_contig16750:4769..4822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 4770..4822 +
1622929977.4889963-CDS-H-elongata_contig16750:5020..58341622929977.4889963-CDS-H-elongata_contig16750:5020..5834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 5021..5834 +
1691679231.9686317-CDS-H-elongata_contig16750:5020..58341691679231.9686317-CDS-H-elongata_contig16750:5020..5834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 5021..5834 +
1622929977.5022614-CDS-H-elongata_contig16750:6377..68271622929977.5022614-CDS-H-elongata_contig16750:6377..6827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 6378..6827 +
1691679231.9781451-CDS-H-elongata_contig16750:6377..68271691679231.9781451-CDS-H-elongata_contig16750:6377..6827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16750 6378..6827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16750.4210.1prot_H-elongata_contig16750.4210.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16750 616..6827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16750.4210.1

>prot_H-elongata_contig16750.4210.1 ID=prot_H-elongata_contig16750.4210.1|Name=mRNA_H-elongata_contig16750.4210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=533bp
MDTRDLFRHPVTEAIAPGYDKLIKRPMDLSTSLKKIRKGGYHTFGDFDHD
LKLMWKNCRTFNGPGTLFYEEAIKQEEGWSKMVSSFEETLREQELYATSG
GGGPCRPLTAASGGATSGKHKAGSAATTTKYSPCLDPLLFPMAPATQLDG
QGLGRRVGLASILLSEPFAAKIMYRYASDRVPDACRRREILPRDHPTFAP
LLQLLELGDAARAMFRADSFGVRAVEEDLMRKVLPCVVALHARAQDAIRR
CRKSQRRVSSEDGRCEKVESEGGGNDSAKHDAADEPGFPQDWKEWYKEFP
VVRRLTCTMLCRALVEGCDEAAALLMPAAVAAVKRMPDELWLWASLREIL
AGGARGALKTKDGGKAVAKAGKKIKADPHLLPETMMHTFTLFSRGLESAA
CSDAVFGESLKCITSLLPMVTMVTTPPPGETGKPTGVTIAVLEEIMDRAV
TRAARPPRTPRTGAEVRRVKDALEAVFAKAPSGWREKFAYNKKKKTLAAA
AVGSGAGAGAGGKAGDGRPPRPPRSFTIKGPKR
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mRNA from alignment at H-elongata_contig16750:586..6827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16750.4210.1 ID=mRNA_H-elongata_contig16750.4210.1|Name=mRNA_H-elongata_contig16750.4210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6242bp|location=Sequence derived from alignment at H-elongata_contig16750:586..6827+ (Himanthalia elongata Himel1 dioecious)
TTAAAGACGGCGTGGTCAGAAGTGACGAAGATGGACACGCGCGACCTGTT
CCGGCATCCCGTCACCGAGGCCATCGCACCTGGATACGACAAATTGATAA
AGAGGCCGATGGACTTATCCACCTCCCTCAAGAAGGTGAAACGAAGCGCT
TCTACGACTGTTCCGTCTCTCTTTTTCTTATCCTGTTTCTGAAAAATTAA
AAGGGAACGACGCTACAGTAGCTCGCTGGTCGACGCAAAGATTTGTGCTC
CCGTGCAATCCCAAGAATATTGGGGGGAGGGAGGGTATTTCACGTAAACA
TCCCCCCCTTCTGAGGATCCAATCGTCGCATCCCCGGTCGTAGTGCTTCA
AGTGGGATATTCACCGGAGAAAAGATTATGAATACGATTTTTTCTTAACC
GGGGACGTTTACTAAAATCCCCTTCCCCTCCCATATATTCCGGAAGAACA
AAAAAAAACGAAACTTTCAAACAGAGATATATATACAGTATAGCGTGGAT
GAGAGAGACGCACGGTAAAAATAAAATAAAATCAATTCTATCATGTACAA
TGGACAATGGAAATTGTTTCGTCCGATTTATTTCATCCACGTAGTATCGA
ACGCCGCGATCTCAGCTAGGTTTTTGGCTCCTTTTCTCTCTCTTTTTGTT
CGGTACTTTGTTGCTCGAAAAATAAATTGTTTCGCACTCTCAATATTTAC
TTATCTTTCAAACAAGAAAACAAATGAACCAAAAGACCCCCCCCCGCCTT
CTACAAAATAAGAAATTGGCGTCATGATCCACGATATTGCGCGTGCTAAC
ACGTTGCCTGCCATTTTCTTAGATTTGACAGGAAAGTAAAAACGTCATGC
ATCCTACGACCCTTGGCGCGTCCTGTTGTGTCTCGATAGTTTTATACATC
GTACATTCTATTAATGCATACGTTGCCTCGGTAAGGATTTTTCCCTCCTT
TGATCCAACCGCTTCCATATGCCAGTATAGTGCCGTACATAAATATGTAC
GAAAGCTGAGGGTGCCGATGGCGACGCCGACCCTAGCCGCGTGCGGGCAT
TCGCGTCTTTAAAATATCCTTTATGTGCATATATTTTTATATATCCCGTG
TACCGCGTCTTGCAGATCAGGAAAGGGGGCTATCATACCTTTGGCGACTT
CGACCATGACCTAAAGCTGATGTGGAAGAATTGCCGTACTTTTAACGGAC
CGGTATGGACATCTATAATAGCATTGGATAATAATGTTGAATAATGTTGG
ATATGTAGCTTACAGTTCTATACAAAAAATGGTATAATTGGTCGCACGTT
CGCGCGTGGTTTTCGTCTTTGCTATTAATAACGGAAAAATGTAAAATCTT
GTCCGCCGTTGGTTCTCCCGTTGGTTGTAGATTCACGGGGATGTTGGATA
TATTTTTCTGTTTTTGGCCTACAAAAAATAAAAAATGAAGGGAAATATTG
TTCCTTGATATTGGGTGATTTTTTTCGAACGGAGGAAACTCCGCGGGATT
TCAGCTCTATGATAGCACGCCTTACCAAGGATGAGAATCCACTCACTCTG
GTTGTCTTTTTCTTCTAGACTAAAGGTGAAGCTGAAGAGTAGCACGCCTT
GCCAAGGCTGAGAACCCCCTCACCCTGTTTGTCTTAAGAGATGGGGCAAG
TGCGCGAGTGTGCTCTGGAGAGCAAAAGCGTGTCCCTTCCCTACATATTT
GATTGATTGAATTCTCACATAAGCTGATGTCAAAATCCAGCCCGAGGTCA
CAAGGTAGGAAAACACTATTCTCTGGAAGGAAGTTCATGTGTTTTTTTTT
AGAAAAAAAGAAATGACAACGATGCATAATACTAATTATATACTATTATT
AATAGCCGGAAAAAGCGAAATATAAATATATATATATATATTAAAAAAAA
AAGAGAACACACAAAATTGTTCACGGAGTTCGTGTGGTTGTTGAGACGCG
GGTCTATCGAAGGACGATTGAACAAAAAGCCACGGGTTCAATGAAACGAA
AGAAAAACAAGACGAAAACGAAACGCCAGAGAAAGACAAAATGGCATCTT
CAAAGAAAAACGCCTGGAGGATACAAGTTCGGACCAGCGCGATCAATTGT
GGCTAATCAACTATGGCGAGCGAACCAGCACGAGCACGCTTGTATTGGGC
TATCCTCTCCTTGGTCCTCCCCGTTACGTTCGTACATGCTAGTGCAAACT
GCAGTCCAGCCCTGACTTTCTCTGCAGCGATCCATTTCCTCATGAAACGT
TCCGCCCCTTGTTCCGTCATCCTGCCCATTCCCCATTTCCCCTCATCGTG
GGCTGCAATATCAAAGATTTAAAACCCTCGCTCCGGTCACTGTAACAGCT
CACCCCTCCCCCCCGGCGAGCCCTAATTGTAGGTCTGGACCTTCATAGAA
TATTGTAGTTCATCACACCTATGAGAAGAAACCCCCGGGGATGAAGCCTT
CGTGTCCCCCCTCAGCACCCTATTTACACCCCATGGGTGGGTGGGTGTGG
GTTAGGGTTAGGGCGGGTTGGATCAGCCAGTATACATAGGTTTTACAGAA
ACGGTTATTTTACTATCCATAAAAACTTTTTTTGCAATTTTCTATCGTAG
GGGGGACACGAAGGCATCATCCCCGGGGGGCTTACAATATTATTTGTAGG
CCTGGACCTACAATTAGGGCTTCCCCCCCCCCCCCCCCCAAACCCACACG
TGCCTTCTTAGACGGCCCTAATCGTTCCTACCAGTATATGTTTTAATTGT
CCACAGTATGTGCACACAGTTCAACGCGACATTGCGCCGCCCGTGTGGTT
TGGGTCTTGCCTGCGACAGGGGACGCTGTTCTACGAGGAGGCTATCAAGC
AGGAAGAGGGGTGGTCCAAGATGGTTTCGTCTTTTGAGGAGACCCTTCGG
GAACAAGAGGTGAAATCTGACACTTGATCGTAGTATAGTACTGCTGTGCG
AGGATGCTTACGGTTGTATTCTTAGTAGAAGGTTGGAGGCATGACTAGAG
TCTAATAGTAATAGTAATGGTAATGATAATAGGTTATATACATACCCCAA
GCCTATTTTATTTTTATTTTTTGTCTATACCCTCCCAATGCCCCTCCTCT
CGAGGATACGCGATACGCGGTCAGAAGTCCAACAGCGGAGGAATGCAAAA
ATGTAGTACGTCAACCCCCCCCCTAGATAACGCCCTCCCCGCCTATAGAT
AACACCCCTCCCTTTTCGGTTCTAGGGATATAGGGAATATAGTATATAGT
ATAGGAGTATAGTATTTTTTCGTAGGCTGAGTGGGTTTAGTGTCCAACTA
TTATAACCCATGACATGGCGTCTCCGGTTTGGCGTAGGTGATGATGATCG
CTAAAAGCTGTTACTGTGTAATCCTTGTGAAACCCAGCCTGGATGTCTTG
GCGTTGTTCGTATGGGTGGCCATGTGGCCATGTCCGTTTAACATTAGTAC
TCCCCCCATATACACATGATGAATATTGAAGTGTTTAGCTCCCAAACTGC
CATGAGTGGTTTGATGTATCCTTCGAGGCGGGGAAGCGAGGGGTAAACAT
ATGCGTACTTTTAAAGGCATGTCATCCCAGCATTATCGTGACTGGATTTT
TGCCGGCCAAGCTGCGTTTCACAAGGATTATACAGTAACAACTCTTAGCC
ATGATCATCACAACTCATGCCATGGGTTATAATATTATTAGTTGGACACT
AGACACACCGGATAGTCAAGTGTGTTGCATATCCAGCAGGCGTTATCGTA
GCCGCTATAGTGTTTTTTATCGATATGATAGGATAGTATAGTATGGGATG
TTACTATACTATACTGTACTATAATGTACTATACTATACTGTACTATACT
ATACTATACTATACTCCCAAGTGCCGCAAAGAGCTACTATTGTTGGATCT
CCGCGCGAAGGTAGAAGGTATAAGCGTTATATCCAAGCACGGCACCAACG
TTATATGCGTGTGATACAGTCGAACTATGATATACGGTATCTGCTCATGA
ATTACTCCTGGCAGAATACGCTCCGAAATATATGACTGATCTACAGTATT
AATACGGCTTTCGATCCATTTCACCCCTTGGAGGAGAGACGGGACGCATT
TACAGGGGTCTCTGAGATCACAGGACACCCTGCATGAACTAATTAGCTAC
ATTATAGTATAGTATTGTAGCGTTTTAGAGCTAGCTCTATGCAACAAGTG
GGGGGGGAGGTCCCTGTCGACCCTTAACCGCCGCATCGTTTATAGGGTAT
AGGGTCTAGTAGATACCGGTAACGTTTTTCATTAATTCGTTTGGGTATTT
TCTGTCATTATTTATCTATAGTTCTCTCTTGTTTTCTGATAATGCGCACC
ATGCGACCTCCAAAACCCACGGTGTTTACAATCCTGCTCTGCATCCCATG
CGTGTGCTGGTCTCGCCCACGCGGCAGGACATCAGCGGCGGCGCAACCAG
TGGTAAACACAAAGCTGGTAGCGCTGCTACCACAACCAAGTATTCTCCTT
GCCTAGACCCGCTGCTCTTTCCGATGGCCCCCGCCACGCAACTGGACGGC
CAGGGCCTCGGGCGCCGCGTGGGCCTCGCCTCAATTCTCCTGTCCGAGCC
GTTCGCGGCCAAGATCATGTACCGGTACGCGTCGGATCGCGTTCCCGACG
CGTGCCGCAGGCGGGAGATCCTCCCGCGAGACCACCCGACCTTCGCGCCT
TTGCTGCAGCTCCTGGAACTCGGCGACGCCGCCCGGGCCATGTTCCGCGC
GGACAGCTTCGGCGTGCGCGCCGTGGAGGAGGATCTGATGAGGAAGGTGC
TGCCGTGCGTCGTGGCGCTCCACGCGCGCGCGCAGGACGCGATCAGGCGT
TGCCGGAAATCGCAGAGGCGTGTTTCTTCCGAGGATGGTAGGTGCGAAAA
AGTCGAGAGCGAGGGTGGTGGTAATGATTCTGCGAAGCATGATGCCGCAG
ACGAGCCTGGGTTTCCCCAGGACTGGAAGGAGTGGTATAAGGAGTTCCCC
GTGGTAAGGCGTTTGACGTGCACCATGCTCTGCCGCGCGCTGGTGGAGGG
GTGTGACGAGGCGGCGGCTTTGCTAATGCCCGCAGCGGTGGCGGCGGTGA
AGAGGATGCCTGACGAGCTGTGGTTGTGGGCGAGCTTAAGAGAGATTCTC
GCCGGCGGCGCGAGGGGGGCACTCAAGACGAAAGACGGGGGGAAAGCCGT
GGCGAAGGCGGGGAAAAAAATCAAGGCTGATCCGCACCTTTTGCCTGAGG
TGGGTGGTCTTGTGTATCGTAAGGAACAATATTATGTACGTACTAATACA
GTTTCCGCTAATGATCGATGTACTAAAACATCGTTACGGTCGTTCCATGA
ATTTATTGTCGCCAGCCACATGTGTCTGTGCCAACCCCTGCTGGTCCAAA
ACTCCAGTTATAATTTAAATTCATGGCCGTTGGATAGTCAATTTATATGA
GAACCTACCAAACTAAATGTTGCATCTAAGTTCCATCTTGCCATAAAATA
ATATTGTGATCCAATTTTTTGCATCATGTCTACGGTAGGCCTCTCGCTTC
CGTCTCTGTGCCGTTTAGTTATTATTATTTATGATACCTCCCCCCTGAAA
TATAATTCGGTGGTCTCTGGAAACCCTTTTTCCGCCATGCCTTTCGCTGG
GAAGAAGACTCGCCCTGCGTGGAAGTTTACATATGTGATTTTTGTCGTGG
ACTAGGTCTCTCCTGTGCCCCCCTCCCCGTCCCATCCGTCTAACGACTGC
CTTCCAACGATCGCCGTCCAACGATTGCTTTCCCACGTCCAGACCATGAT
GCACACCTTCACGCTGTTTTCGCGCGGTCTGGAATCGGCCGCCTGTTCCG
ACGCCGTCTTCGGAGAGTCGCTCAAGTGCATCACCAGTCTCTTGCCGATG
GTCACGATGGTCACGACGCCGCCGCCGGGAGAAACAGGAAAGCCTACGGG
AGTTACAATCGCGGTGTTGGAGGAGATTATGGACAGGGCCGTGACCCGGG
CGGCACGGCCGCCTCGAACGCCCAGGACGGGAGCAGAAGTGCGACGGGTG
AAGGATGCCCTGGAGGCCGTGTTCGCTAAGGCTCCTTCGGGCTGGCGAGA
GAAGTTTGCCTACAACAAAAAGAAAAAAACACTTGCAGCGGCAGCTGTTG
GGTCTGGGGCTGGAGCCGGGGCCGGTGGGAAGGCCGGAGACGGGCGACCA
CCGCGTCCCCCCCGAAGCTTTACGATCAAGGGTCCGAAGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig16750:586..6827+

>mRNA_H-elongata_contig16750.4210.1 ID=mRNA_H-elongata_contig16750.4210.1|Name=mRNA_H-elongata_contig16750.4210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3198bp|location=Sequence derived from alignment at H-elongata_contig16750:586..6827+ (Himanthalia elongata Himel1 dioecious)
ATGGACACGCGCGACCTGTTCCGGCATCCCGTCACCGAGGCCATCGCACC
TGGATACGACAAATTGATAAAGAGGCCGATGGACTTATCCACCTCCCTCA
AGAAGATGGACACGCGCGACCTGTTCCGGCATCCCGTCACCGAGGCCATC
GCACCTGGATACGACAAATTGATAAAGAGGCCGATGGACTTATCCACCTC
CCTCAAGAAGATCAGGAAAGGGGGCTATCATACCTTTGGCGACTTCGACC
ATGACCTAAAGCTGATGTGGAAGAATTGCCGTACTTTTAACGGACCGATC
AGGAAAGGGGGCTATCATACCTTTGGCGACTTCGACCATGACCTAAAGCT
GATGTGGAAGAATTGCCGTACTTTTAACGGACCGGGGACGCTGTTCTACG
AGGAGGCTATCAAGCAGGAAGAGGGGTGGTCCAAGATGGTTTCGTCTTTT
GAGGAGACCCTTCGGGAACAAGAGGGGACGCTGTTCTACGAGGAGGCTAT
CAAGCAGGAAGAGGGGTGGTCCAAGATGGTTTCGTCTTTTGAGGAGACCC
TTCGGGAACAAGAGCTCTATGCAACAAGTGGGGGGGGAGGTCCCTGTCGA
CCCTTAACCGCCGCATCCTCTATGCAACAAGTGGGGGGGGAGGTCCCTGT
CGACCCTTAACCGCCGCATCCGGCGGCGCAACCAGTGGTAAACACAAAGC
TGGTAGCGCTGCTACCACAACCAAGTATTCTCCTTGCCTAGACCCGCTGC
TCTTTCCGATGGCCCCCGCCACGCAACTGGACGGCCAGGGCCTCGGGCGC
CGCGTGGGCCTCGCCTCAATTCTCCTGTCCGAGCCGTTCGCGGCCAAGAT
CATGTACCGGTACGCGTCGGATCGCGTTCCCGACGCGTGCCGCAGGCGGG
AGATCCTCCCGCGAGACCACCCGACCTTCGCGCCTTTGCTGCAGCTCCTG
GAACTCGGCGACGCCGCCCGGGCCATGTTCCGCGCGGACAGCTTCGGCGT
GCGCGCCGTGGAGGAGGATCTGATGAGGAAGGTGCTGCCGTGCGTCGTGG
CGCTCCACGCGCGCGCGCAGGACGCGATCAGGCGTTGCCGGAAATCGCAG
AGGCGTGTTTCTTCCGAGGATGGTAGGTGCGAAAAAGTCGAGAGCGAGGG
TGGTGGTAATGATTCTGCGAAGCATGATGCCGCAGACGAGCCTGGGTTTC
CCCAGGACTGGAAGGAGTGGTATAAGGAGTTCCCCGTGGTAAGGCGTTTG
ACGTGCACCATGCTCTGCCGCGCGCTGGTGGAGGGGTGTGACGAGGCGGC
GGCTTTGCTAATGCCCGCAGCGGTGGCGGCGGTGAAGAGGATGCCTGACG
AGCTGTGGTTGTGGGCGAGCTTAAGAGAGATTCTCGCCGGCGGCGCGAGG
GGGGCACTCAAGACGAAAGACGGGGGGAAAGCCGTGGCGAAGGCGGGGAA
AAAAATCAAGGCTGATCCGCACCTTTTGCCTGAGCGGCGGCGCAACCAGT
GGTAAACACAAAGCTGGTAGCGCTGCTACCACAACCAAGTATTCTCCTTG
CCTAGACCCGCTGCTCTTTCCGATGGCCCCCGCCACGCAACTGGACGGCC
AGGGCCTCGGGCGCCGCGTGGGCCTCGCCTCAATTCTCCTGTCCGAGCCG
TTCGCGGCCAAGATCATGTACCGGTACGCGTCGGATCGCGTTCCCGACGC
GTGCCGCAGGCGGGAGATCCTCCCGCGAGACCACCCGACCTTCGCGCCTT
TGCTGCAGCTCCTGGAACTCGGCGACGCCGCCCGGGCCATGTTCCGCGCG
GACAGCTTCGGCGTGCGCGCCGTGGAGGAGGATCTGATGAGGAAGGTGCT
GCCGTGCGTCGTGGCGCTCCACGCGCGCGCGCAGGACGCGATCAGGCGTT
GCCGGAAATCGCAGAGGCGTGTTTCTTCCGAGGATGGTAGGTGCGAAAAA
GTCGAGAGCGAGGGTGGTGGTAATGATTCTGCGAAGCATGATGCCGCAGA
CGAGCCTGGGTTTCCCCAGGACTGGAAGGAGTGGTATAAGGAGTTCCCCG
TGGTAAGGCGTTTGACGTGCACCATGCTCTGCCGCGCGCTGGTGGAGGGG
TGTGACGAGGCGGCGGCTTTGCTAATGCCCGCAGCGGTGGCGGCGGTGAA
GAGGATGCCTGACGAGCTGTGGTTGTGGGCGAGCTTAAGAGAGATTCTCG
CCGGCGGCGCGAGGGGGGCACTCAAGACGAAAGACGGGGGGAAAGCCGTG
GCGAAGGCGGGGAAAAAAATCAAGGCTGATCCGCACCTTTTGCCTGAGAC
CATGATGCACACCTTCACGCTGTTTTCGCGCGGTCTGGAATCGGCCGCCT
GTTCCGACGCCGTCTTCGGAGAGTCGCTCAAGTGCATCACCAGTCTCTTG
CCGATGGTCACGATGGTCACGACGCCGCCGCCGGGAGAAACAGGAAAGCC
TACGGGAGTTACAATCGCGGTGTTGGAGGAGATTATGGACAGGGCCGTGA
CCCGGGCGGCACGGCCGCCTCGAACGCCCAGGACGGGAGCAGAAGTGCGA
CGGGTGAAGGATGCCCTGGAGGCCGTGTTCGCTAAGGCTCCTTCGGGCTG
GCGAGAGAAGTTTGCCTACAACAAAAAGAAAAAAACACTTGCAGCGGCAG
CTGTTGGGTCTGGGGCTGGAGCCGGGGCCGGTGGGAAGGCCGGAGACGGG
CGACCACCGCGTCCCCCCCGAAGCTTTACGATCAAGGGTCCGAAGAGAAC
CATGATGCACACCTTCACGCTGTTTTCGCGCGGTCTGGAATCGGCCGCCT
GTTCCGACGCCGTCTTCGGAGAGTCGCTCAAGTGCATCACCAGTCTCTTG
CCGATGGTCACGATGGTCACGACGCCGCCGCCGGGAGAAACAGGAAAGCC
TACGGGAGTTACAATCGCGGTGTTGGAGGAGATTATGGACAGGGCCGTGA
CCCGGGCGGCACGGCCGCCTCGAACGCCCAGGACGGGAGCAGAAGTGCGA
CGGGTGAAGGATGCCCTGGAGGCCGTGTTCGCTAAGGCTCCTTCGGGCTG
GCGAGAGAAGTTTGCCTACAACAAAAAGAAAAAAACACTTGCAGCGGCAG
CTGTTGGGTCTGGGGCTGGAGCCGGGGCCGGTGGGAAGGCCGGAGACGGG
CGACCACCGCGTCCCCCCCGAAGCTTTACGATCAAGGGTCCGAAGAGA
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