mRNA_H-elongata_contig167491.4209.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167491.4209.1
Unique NamemRNA_H-elongata_contig167491.4209.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 226 bits (576), Expect = 6.850e-65
Identity = 136/359 (37.88%), Postives = 202/359 (56.27%), Query Frame = 1
Query:    4 VELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEADVEENIYVELPEAYRDSRKQ--VGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILH--GVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGV--TKTSTIPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITYGGEPGGNQVIS-VDRRRLRH---LPGYASLSVG 1050
            VE PK   ++G++ VF+ K + +  IE YK RLVAQGF QV GI + E+  P    ASI ++L++     WE  Q++V  AYL  D+EE IY++ P    +  K+  V  LK+ +YGL  +G  + K+   EL + G  RS+ D CVF W+ +   V++++IA+ VDD  +A  TK       R++ + F ++DLG++ + LG  + RDR+  TL   QH YI  +  RF +   K+ T P   G   LS    P T  QFE+M+ IPY+ ++G+LM+AA  TRPDI++A   L +F  NPG  HW  A++  +YL  TR+  +T+G    G +  S  D     H   + GY  L  G
Sbjct:  147 VEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGT-VLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGETTDGVEGFSDADWGSAEHRHSISGYVFLLDG 502          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI)

HSP 1 Score: 219 bits (558), Expect = 1.210e-64
Identity = 121/322 (37.58%), Postives = 191/322 (59.32%), Query Frame = 1
Query:   10 LPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEADVEENIYVELPEAYRDSRKQ--VGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILHGVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGVTKTST--IPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITY 963
            +P+G   +G + VFK K+D +G IE++K RLVA+GF Q  G+ Y+E+  P   + S+R+V++M+     E  Q++V  A+L  +++E ++++ PE +    K+  V  LKK++YGL  A   W  +F   + + GF+ +  D C++  I  G   +++ +YVDD+L+A+       Q    L   F + D+G+ SY +G  I+RDR+ G L   Q  YI  V ERF + K S   +P   G K  S +  P+ + + ++M QIPY +IVG+LM+A T TRP ISFA   LG++  NPG  HW+ A+K L+YL  T+D  +TY
Sbjct:    1 MPEGCKRVGCKWVFKTKLDSNGNIERHKARLVAKGFTQKDGVDYKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRYLQGTKDRMLTY 320          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS)

HSP 1 Score: 219 bits (559), Expect = 8.330e-64
Identity = 125/354 (35.31%), Postives = 190/354 (53.67%), Query Frame = 1
Query:    7 ELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEADVEENIYVELPEAYRDSRKQVGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILHGVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGVTKTSTIPSAAGKKALSKSNSPQTDAQFEEMRQIP-YKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITYGGEPGGNQVISVDRRRLRHLPGYASLSVGRGGDD 1065
            +LP G+  +G + VF  K D+DG I +YK RLVAQG+ Q+ G+ Y E+  P     S+   L +      E  Q++V  AYL  ++EE IY+  PE Y D   +V  L+K +YGL  +G  W  +F  +L + GF + +AD CV++ I  G + + I V+VDDLL+ S T  D  +   +L + F + DLG+    +G  I RDR  GT+   Q QYI+ V  RFG+     + +      + K    +TD    +   +  Y++++G+L++AA  TRPDIS A  +LG+F  NPGP HW   ++  +YL  TR+L + +     G ++IS          GY+  S     DD
Sbjct:    8 DLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYNETFAPVVRLESVHAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGCEWNWEFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTLLDPNVILKK---RTDDLIADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVFRANEEG-EIIST---------GYSDASFASNPDD 347          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 230 bits (586), Expect = 8.670e-64
Identity = 144/360 (40.00%), Postives = 199/360 (55.28%), Query Frame = 1
Query:    1 VVELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEA--DVEENIYVELPEAY--RDSRKQVGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILHGVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGVT--KTSTIPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITYGGEPGGNQ-VISVDRRRLRH---LPGYASLSVG 1050
            VVE P G  V+G++ V + K D  G I+KYK RLVAQGF QV G+ Y E+  P    ASIR+VL++    GWE +  + N AYL +  D +E IY+E P  +  +D +  V  LKKA+YGL   G  W +   I L   GF+R++AD  VF +   G  +V++A++VDD ++   +     Q  R L   + + DLG VS+ LG  +TRD  A TL   QH YI ++  RF  T  K S+IP     + L KS  P +      MR+IPY+  +G+LM+AA  TRPDISFA   L +F+ NPG  HW   ++  +YL  T+ L + YGG   G Q  +  D     H   + GY  L  G
Sbjct:  997 VVERPLGVNVVGSKWVLRIKKDATGAIDKYKARLVAQGFTQVYGVDYFETFAPVAKIASIRLVLAIAARNGWEVQSFDFNSAYLNSVLDDDEEIYLEQPPQFSLKDPKLHVLRLKKALYGLKQGGRKWYEHLCIALADLGFKRAEADYGVF-YAKVGESLVLLAIHVDDCIITGNSSTLISQYKRQLGDKYSLTDLGPVSWLLGIKVTRDLEARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNIQFL-KSQCPTSLIDIARMRKIPYREAIGSLMYAAVGTRPDISFAVSTLAQFSHNPGWIHWEAVKRVFRYLLGTKMLVLQYGGVQQGLQGYVDADGASQEHRHAISGYVFLVDG 1354          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 219 bits (559), Expect = 3.190e-63
Identity = 121/324 (37.35%), Postives = 189/324 (58.33%), Query Frame = 1
Query:    4 VELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEADVEENIYVELPEAYRDSRKQ--VGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILHGVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGVTKTST--IPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITY 963
            VELP+G   +G + VFK K D +G IE+YK RLVA+GF Q +GI Y+E+  P   + S+R++++++     E  Q++V  A+L  ++EE +++  PE +    K+  V  LKK++YGL  A   W  +F   + + GF+ +  D C++  +  G   + + +YVDD+L+AS+      +    L   F + D+G+ SY +G  I RDR+ G L   Q  YI+ V ERFG+ K S    P   G K  S    PQ + + + M +IPY + VG+L++A T TRPDISFA   LG++  NPG  HW+  +K ++YL  T++  +TY
Sbjct:   52 VELPEGCKRVGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCSPSIAPIQKGDK-FSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTY 373          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 227 bits (579), Expect = 7.380e-63
Identity = 138/359 (38.44%), Postives = 202/359 (56.27%), Query Frame = 1
Query:    4 VELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEADVEENIYVELPEAYRDSRKQ--VGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILH--GVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGV--TKTSTIPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITYGGEPGGNQVIS-VDRRRLRH---LPGYASLSVG 1050
            VE PK   ++G++ VF+ K + +G IE YK RLVAQGF QV GI + E+  P    ASIR++L++     WE  Q++V  AYL  D+EE IY+  P    +  K+  V  LK+ +YGL  +G  + K+   EL + G  RS+ D CVF W+ +   V++++IA+ VDD  +A  TK       R++ + F ++DLG++ + LG  + RDR+A TL   Q  YI  +  RF +   K+ T P   G   LS    P T  QFE+M+ IPY+  +G+LM+AA  TRPDI++A   L +F  NPG  HW  A++  +YL  TR+  +T+G    G +  S  D     H   + GY  L  G
Sbjct:  957 VEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGT-VLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFGETTDGVEGFSDADWGSAEHRHSISGYVFLLDG 1312          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 227 bits (578), Expect = 1.010e-62
Identity = 136/359 (37.88%), Postives = 201/359 (55.99%), Query Frame = 1
Query:    4 VELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEA--DVEENIYVELPE--AYRDSRKQVGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILHGVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGVT--KTSTIPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITYGGEPGGNQ-VISVDRRRLRH---LPGYASLSVG 1050
            V+ P    V+G++ V + K D  G I+KYK RLVAQGF Q+ GI Y E+  P    +SIR++L++    GW+ +  + N AYL +  D +E IY+E P   A +D +  V  L+KA+YGL   G  W +   I L   GF R+++D  VF + +    + V+A++VDD  +  ++     +  R +   +P+ DLG+VS+ LG  + RDR A TL   QH YI ++  RF  T  K S+IP     + L+KS  P + A    MR+IPY+  +G+LM+AA  TRPDISFA   L +F+ NPG THW   ++  +YL  T++L + YGG   G +  +  D     H   + GY  L  G
Sbjct:  998 VDRPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVF-FAIDANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGLEGYVDADGASQEHRHAITGYVFLVDG 1354          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A251UJK4_HELAN (Putative zinc finger, CCHC-type n=7 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UJK4_HELAN)

HSP 1 Score: 226 bits (577), Expect = 1.100e-62
Identity = 121/324 (37.35%), Postives = 191/324 (58.95%), Query Frame = 1
Query:    4 VELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEADVEENIYVELPEAYRDSRKQ--VGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILHGVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGVT--KTSTIPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITY 963
            VELP G   +G + VFK K+D +G +E+YK RLVA+G+ Q +GI Y+E+  P   + S+R+V++++     E  Q++V  A+L  D++E++Y++ PE ++   ++  V  LKK++YGL  A   W  +F   ++ +GF ++Q D C +   + G    ++ +YVDD+L+AS +     ++ R L   F + DLG  SY +G  I RDR+ G L   Q  YI  V  R+ +   K S  P   G         P T+ + E+M QIPY ++VG+LM+A   TRPDI++ A  LG++  NPG  HW+ A+K L+YL  T+D  +TY
Sbjct:  830 VELPNGVKPVGCKWVFKTKLDPNGNVERYKARLVAKGYTQKEGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLDEDVYMKQPEGFKPEGQEHLVCKLKKSIYGLKQASRQWYLKFDEVMKRQGFMKNQVDQCTYLK-MSGSDFTILVLYVDDILLASNSLDMLHESKRLLSHNFDMKDLGDASYVIGIEIHRDRHKGILGLSQKAYIDRVLTRYNMQQCKPSVAPVVKGD-VFGSFQCPTTEVEKEQMSQIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDYKLTY 1151          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A438CL20_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CL20_VITVI)

HSP 1 Score: 224 bits (570), Expect = 9.530e-62
Identity = 123/324 (37.96%), Postives = 189/324 (58.33%), Query Frame = 1
Query:    4 VELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEADVEENIYVELPEAYRDSRKQ--VGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILHGVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGV--TKTSTIPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITY 963
            VELP G   +G + VFK K D  G+IE+YK RLV +G+ Q +GI ++E+  P   + S R++++++     E  Q++V  A+L  D++E +Y+E P  + +  K+  V  L K++YGL  A   W  +F   +   GF+ +  D C++  +  G   + + +YVDD+L+AS       +    L + F + DLG+ SY LG  I RDR  G LK  Q  YI+ + +RF +   K++  P   G K  SK+  PQ D + EEM+ IPY ++VG+LM+A   TRPDI+F    LG++  NPG  HW+ A+K L+YL  T+DL +TY
Sbjct:  808 VELPHGCKPVGCKWVFKTKRDSSGKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEEVYMEQPIGFVEVGKEDLVCKLNKSIYGLKQASRQWYLKFDKIITQNGFKENTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKGDK-FSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKDLMLTY 1129          
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Match: A0A445LQ30_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445LQ30_GLYSO)

HSP 1 Score: 223 bits (569), Expect = 1.630e-61
Identity = 125/324 (38.58%), Postives = 191/324 (58.95%), Query Frame = 1
Query:    4 VELPKGKTVLGTRLVFKCKIDKDGRIEKYKCRLVAQGFRQVKGIQYEESSYPTPAQASIRMVLSMIVALGWEARQLNVNMAYLEADVEENIYVELPEAYRDSRKQ--VGILKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRWILHGVVVVVIAVYVDDLLVASATKRDEEQAARDLCS*FPINDLGKVSYYLGCHITRDRNAGTLKFEQHQYIQNVAERFGVTKTST--IPSAAGKKALSKSNSPQTDAQFEEMRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKALQYLWRTRDLGITY 963
            VELPKG   +G + VFK K D  G +E+YK RLVA+GF Q  GI Y+E+  P   + S R++++++     E  Q++V  A+L  D+EE++Y++ P  +    K+  V  LKK++YGL  A   W  +F   + + GF+ +  D CV+  +  G  V+ + +YVDD+L+A+       +  + L S F + D+G+ SY +G  I R+R+ G L   Q  YI  V ERF + K S   +P   G K  S +  P+ D + ++M  IPY ++VG++M+A T TRPDISFA   LG++  NPG  HW+ A+K L+YL  T+D  +TY
Sbjct:  929 VELPKGCKRVGYKWVFKTKRDSHGNLERYKARLVAKGFTQKDGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQMDVKTAFLNGDLEEDVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIVSFGFKENTVDRCVYLKV-SGSKVMFLVLYVDDILLATNDLGLFHETKKFLSSNFEMKDMGEASYVIGIEIFRNRSQGLLGLSQKAYINKVLERFRMEKCSASPVPIQKGDK-FSLAQCPKNDLERKQMEAIPYASVVGSIMYAQTCTRPDISFATGMLGRYQSNPGMEHWKAAKKVLRYLQGTKDHILTY 1250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167491.4209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GP19_9APHY6.850e-6537.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4V1T029_9SPHI1.210e-6437.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284R853_ARMOS8.330e-6435.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K4Q2_9APHY8.670e-6440.00Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]
A0A2P6S2B9_ROSCH3.190e-6337.35Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]
A0A401GN13_9APHY7.380e-6338.44Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A2R6PCF8_9APHY1.010e-6237.88Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A251UJK4_HELAN1.100e-6237.35Putative zinc finger, CCHC-type n=7 Tax=Helianthus... [more]
A0A438CL20_VITVI9.530e-6237.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A445LQ30_GLYSO1.630e-6138.58Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167491contigH-elongata_contig167491:78..1164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.0
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog28532.XP_010559036.1
EggNOG free text desc.domain in FBox and BRCT domain containing plant proteins
EggNOG OGs389MP@33090,3GYT9@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size1087
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167491.4209.1prot_H-elongata_contig167491.4209.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167491 94..390 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.3566787-UTR-H-elongata_contig167491:77..931622929977.3566787-UTR-H-elongata_contig167491:77..93Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167491 78..93 -
1691679231.8741167-UTR-H-elongata_contig167491:77..931691679231.8741167-UTR-H-elongata_contig167491:77..93Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167491 78..93 -
1622929977.3832757-UTR-H-elongata_contig167491:390..11641622929977.3832757-UTR-H-elongata_contig167491:390..1164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167491 391..1164 -
1691679231.8939052-UTR-H-elongata_contig167491:390..11641691679231.8939052-UTR-H-elongata_contig167491:390..1164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167491 391..1164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.3705673-CDS-H-elongata_contig167491:93..3901622929977.3705673-CDS-H-elongata_contig167491:93..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167491 94..390 -
1691679231.885077-CDS-H-elongata_contig167491:93..3901691679231.885077-CDS-H-elongata_contig167491:93..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167491 94..390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167491.4209.1

>prot_H-elongata_contig167491.4209.1 ID=prot_H-elongata_contig167491.4209.1|Name=mRNA_H-elongata_contig167491.4209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MRQIPYKAIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTHWREAQKAL
QYLWRTRDLGITYGGEPGGNQVISVDRRRLRHLPGYASLSVGRGGDDG*
back to top

mRNA from alignment at H-elongata_contig167491:78..1164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167491.4209.1 ID=mRNA_H-elongata_contig167491.4209.1|Name=mRNA_H-elongata_contig167491.4209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1087bp|location=Sequence derived from alignment at H-elongata_contig167491:78..1164- (Himanthalia elongata Himel1 dioecious)
GTGGTGGAGCTCCCAAAAGGGAAGACGGTGTTGGGCACGAGATTAGTTTT CAAGTGCAAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGTC TCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACAATACGAGGAATCC TCCTATCCGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGAT CGTGGCTCTCGGCTGGGAGGCGCGGCAGCTGAATGTCAACATGGCCTACT TGGAGGCCGATGTGGAGGAGAATATCTACGTTGAGCTCCCAGAGGCATAC CGTGACTCCAGGAAGCAAGTCGGCATACTAAAGAAGGCAATGTACGGACT CGTCCACGCCGGGCTGCTGTGGTAAAAGCAGTTCGGGATCGAGCTCGAGG CGAAAGGTTTCCAGAGATCTCAAGCCGACCCATGCGTGTTCCGGTGGATT CTCCACGGGGTAGTGGTAGTCGTCATCGCGGTCTACGTCGACGACCTGCT GGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGCGAGGGACCTGT GCTCCTGATTTCCCATCAACGATCTGGGGAAGGTTTCATATTACCTGGGA TGCCACATCACGCGGGACCGGAACGCCGGGACACTGAAGTTCGAACAGCA TCAGTACATACAGAATGTGGCGGAACGTTTTGGCGTGACGAAGACCAGCA CCATCCCGTCTGCGGCAGGAAAAAAAGCCCTTTCGAAATCAAACAGCCCG CAAACGGACGCACAGTTTGAAGAAATGCGCCAGATTCCCTACAAAGCAAT CGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGACATTTCAT TCGCTGCGCACCAACTGGGGAAATTCAACGACAACCCGGGACCGACACAC TGGAGGGAAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTCGGGACCT CGGGATCACCTACGGAGGGGAACCGGGGGGGAACCAAGTTATCAGCGTGG ATCGACGCAGGCTACGGCACCTGCCTGGATACGCGTCGCTCAGTGTCGGA AGGGGCGGTGATGATGGCTGACGGGGCCATCAGTTGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig167491:78..1164-

>mRNA_H-elongata_contig167491.4209.1 ID=mRNA_H-elongata_contig167491.4209.1|Name=mRNA_H-elongata_contig167491.4209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig167491:78..1164- (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATTCCCTACAAAGCAATCGTTGGGGCCCTAATGTGGGCAGC
GACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGGGAAAT
TCAACGACAACCCGGGACCGACACACTGGAGGGAAGCCCAGAAAGCGCTG
CAATATTTATGGCGCACTCGGGACCTCGGGATCACCTACGGAGGGGAACC
GGGGGGGAACCAAGTTATCAGCGTGGATCGACGCAGGCTACGGCACCTGC
CTGGATACGCGTCGCTCAGTGTCGGAAGGGGCGGTGATGATGGCTGAATG
CGCCAGATTCCCTACAAAGCAATCGTTGGGGCCCTAATGTGGGCAGCGAC
GATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGGGGAAATTCA
ACGACAACCCGGGACCGACACACTGGAGGGAAGCCCAGAAAGCGCTGCAA
TATTTATGGCGCACTCGGGACCTCGGGATCACCTACGGAGGGGAACCGGG
GGGGAACCAAGTTATCAGCGTGGATCGACGCAGGCTACGGCACCTGCCTG
GATACGCGTCGCTCAGTGTCGGAAGGGGCGGTGATGATGGCTGA
back to top