mRNA_H-elongata_contig167490.4208.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 147 bits (371), Expect = 3.430e-41 Identity = 80/178 (44.94%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GTG+ + ++S C VC + HPK + +++RP QL D MG P A + Y KITD+YTK VYLL K +++ + RI R DKGGE TG EFR YC + I ++AATNTPQQIGVSE G+TL
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTL 216
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 154 bits (389), Expect = 3.510e-40 Identity = 75/170 (44.12%), Postives = 102/170 (60.00%), Query Frame = 1
Query: 28 VWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAMAGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+WHRRL H H ++ + TG+ + C+ C L HPKTA H +P Q Y DL+G +P A G+ YVSK TDEY++ VYL+ TKD+A+ +L+ F+ VIP R+ R R+D GGEYT E + ++C GI+Q+F A TPQQ G+SER GRTL
Sbjct: 470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTL 639
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE) HSP 1 Score: 150 bits (378), Expect = 8.280e-39 Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GTG+ + ++S C VC + HPK + +++RP QL D MG P A + Y KITD+YTK VYLL K +++ + RI R DKGGE TG EFR YC + I ++AATNTPQQIGVSER G+TL
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.040e-38 Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GTG+ + ++S C VC + HPK + +++RP QL D MG P A + Y KITD+YTK VYLL K +++ + RI R DKGGE TG EFR YC + I ++AATNTPQQIGVSER G+TL
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.050e-38 Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GTG+ + ++S C VC + HPK + +++RP QL D MG P A + Y KITD+YTK VYLL K +++ + RI R DKGGE TG EFR YC + I ++AATNTPQQIGVSER G+TL
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 149 bits (376), Expect = 1.090e-38 Identity = 80/178 (44.94%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GTG+ + ++S C VC + HPK + +++RP QL D MG P A + Y KITD+YTK VYLL K +++ + RI R DKGGE TG EFR YC + I ++AATNTPQQIG SER G+TL
Sbjct: 415 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTL 592
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE) HSP 1 Score: 148 bits (374), Expect = 3.570e-38 Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GTG+ F ++S C VC + HPK + +++RP QL D +G P A + Y KITD+YTK VYLL K +++ + RI R DKGGE TG EFR YC + I ++AATNTPQQIGVSER G+TL
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE) HSP 1 Score: 145 bits (367), Expect = 7.120e-38 Identity = 79/178 (44.38%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GTG+ + ++S C VC + HPK + +++RP QL D MG P A + Y KITD+YTK VYLL K +++ + RI R DKGGE TG EFR C + I ++AATNTPQQ+GVSER G+TL
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTL 216
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 146 bits (369), Expect = 7.400e-38 Identity = 79/178 (44.38%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GT + + ++S C VC + HPK + +++RP QL D MG P A + Y K+TD+YTK VYLL K +++ + RI R DKGGE TG EFR YC + I ++AATNTPQQIGVSER G+TL
Sbjct: 363 LVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 540
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE) HSP 1 Score: 147 bits (371), Expect = 8.290e-38 Identity = 80/178 (44.94%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 13 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 519
+ +A WHRRL HL+A+SLDILRK GTG+ + ++S C VC + HPK + +++RP QL D MG P A + Y KITD+YTK VYLL K +++ + RI R DKGGE TG EFR YC + I ++AATNTPQQIG SER G+TL
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTL 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig167490.4208.1 >prot_H-elongata_contig167490.4208.1 ID=prot_H-elongata_contig167490.4208.1|Name=mRNA_H-elongata_contig167490.4208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp MNAIANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALGHPback to top mRNA from alignment at H-elongata_contig167490:642..1184+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig167490.4208.1 ID=mRNA_H-elongata_contig167490.4208.1|Name=mRNA_H-elongata_contig167490.4208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig167490:642..1184+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig167490:642..1184+ >mRNA_H-elongata_contig167490.4208.1 ID=mRNA_H-elongata_contig167490.4208.1|Name=mRNA_H-elongata_contig167490.4208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig167490:642..1184+ (Himanthalia elongata Himel1 dioecious)back to top |