mRNA_H-elongata_contig167348.4204.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig167348.4204.1
Unique NamemRNA_H-elongata_contig167348.4204.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig167348.4204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig167348contigH-elongata_contig167348:571..1398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size828
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig167348.4204.1prot_H-elongata_contig167348.4204.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig167348 734..1183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.9771996-UTR-H-elongata_contig167348:570..7331622929976.9771996-UTR-H-elongata_contig167348:570..733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167348 571..733 +
1691679231.735824-UTR-H-elongata_contig167348:570..7331691679231.735824-UTR-H-elongata_contig167348:570..733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167348 571..733 +
1622929977.038764-UTR-H-elongata_contig167348:1183..13981622929977.038764-UTR-H-elongata_contig167348:1183..1398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167348 1184..1398 +
1691679231.754483-UTR-H-elongata_contig167348:1183..13981691679231.754483-UTR-H-elongata_contig167348:1183..1398Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig167348 1184..1398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.0203831-CDS-H-elongata_contig167348:733..11831622929977.0203831-CDS-H-elongata_contig167348:733..1183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167348 734..1183 +
1691679231.7465289-CDS-H-elongata_contig167348:733..11831691679231.7465289-CDS-H-elongata_contig167348:733..1183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig167348 734..1183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig167348.4204.1

>prot_H-elongata_contig167348.4204.1 ID=prot_H-elongata_contig167348.4204.1|Name=mRNA_H-elongata_contig167348.4204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MPVDRHTPNNQNSLENRSNRTIISRGRYENSLLDDLVGSIRPIKYACGYI
LVGVGKNKTQGRINQGCLHDRQLHITFQMTNVGTGFRVGTGRFFFFSKPV
LLRHCDIFARHWLGTVRFFVSKTGPGLALWDYCQHWLGTVRIMWSCQQP*
back to top

mRNA from alignment at H-elongata_contig167348:571..1398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig167348.4204.1 ID=mRNA_H-elongata_contig167348.4204.1|Name=mRNA_H-elongata_contig167348.4204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at H-elongata_contig167348:571..1398+ (Himanthalia elongata Himel1 dioecious)
CTTGAACTTAATCCAACCCTCAGAATATCCACACCTTCTTAGCGCCGTGA
GAGGTGCAATCCAGGGGACCAACTATCGTCAGCATTGATTGTGTACATTA
CTACCTTTGAAAACCATATTGATGTGATCGAGTCAGTTTTGCCGCAAAAG
CCTCGCATTATATATGCCTGTTGACAGACATACACCGAACAACCAAAATT
CACTTGAAAACAGAAGTAACCGAACTATTATATCACGTGGCCGGTACGAA
AATTCCCTCTTAGACGACTTAGTTGGCTCCATTCGGCCAATTAAATATGC
CTGTGGATATATACTGGTCGGGGTAGGGAAGAACAAAACGCAGGGGAGGA
TTAATCAGGGCTGCTTACATGACCGGCAATTACACATTACTTTTCAAATG
ACCAATGTCGGAACCGGTTTTCGGGTTGGTACTGGGAGATTTTTTTTCTT
CTCAAAACCGGTACTGCTTCGGCATTGTGATATTTTTGCTCGGCACTGGT
TGGGCACTGTGAGATTTTTCGTCTCCAAAACCGGTCCTGGTTTGGCACTG
TGGGATTATTGCCAGCACTGGTTGGGTACTGTCAGAATTATGTGGTCATG
TCAGCAGCCCTGAAATTTTTCATTATTTGGTATTTTGGCCGGTGAAAAAT
TATTTCGCTACATGTGGTCCAGAAGGATCAACCACTGTCTGCCCTTCAAG
CTGCCGTGCCCATTAGTTTTGGCGGAAAATAATTGAAAAAAGAGACCACA
CAACCGCTCTAATACCACGAAATATATTAATACCGAAACTTGCTTGTTCT
GCTCTTTTTATTAGAAAAACCTTAAACT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig167348:571..1398+

>mRNA_H-elongata_contig167348.4204.1 ID=mRNA_H-elongata_contig167348.4204.1|Name=mRNA_H-elongata_contig167348.4204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig167348:571..1398+ (Himanthalia elongata Himel1 dioecious)
ATGCCTGTTGACAGACATACACCGAACAACCAAAATTCACTTGAAAACAG
AAGTAACCGAACTATTATATCACGTGGCCGGTACGAAAATTCCCTCTTAG
ACGACTTAGTTGGCTCCATTCGGCCAATTAAATATGCCTGTGGATATATA
CTGGTCGGGGTAGGGAAGAACAAAACGCAGGGGAGGATTAATCAGGGCTG
CTTACATGACCGGCAATTACACATTACTTTTCAAATGACCAATGTCGGAA
CCGGTTTTCGGGTTGGTACTGGGAGATTTTTTTTCTTCTCAAAACCGGTA
CTGCTTCGGCATTGTGATATTTTTGCTCGGCACTGGTTGGGCACTGTGAG
ATTTTTCGTCTCCAAAACCGGTCCTGGTTTGGCACTGTGGGATTATTGCC
AGCACTGGTTGGGTACTGTCAGAATTATGTGGTCATGTCAGCAGCCCTGA
ATGCCTGTTGACAGACATACACCGAACAACCAAAATTCACTTGAAAACAG
AAGTAACCGAACTATTATATCACGTGGCCGGTACGAAAATTCCCTCTTAG
ACGACTTAGTTGGCTCCATTCGGCCAATTAAATATGCCTGTGGATATATA
CTGGTCGGGGTAGGGAAGAACAAAACGCAGGGGAGGATTAATCAGGGCTG
CTTACATGACCGGCAATTACACATTACTTTTCAAATGACCAATGTCGGAA
CCGGTTTTCGGGTTGGTACTGGGAGATTTTTTTTCTTCTCAAAACCGGTA
CTGCTTCGGCATTGTGATATTTTTGCTCGGCACTGGTTGGGCACTGTGAG
ATTTTTCGTCTCCAAAACCGGTCCTGGTTTGGCACTGTGGGATTATTGCC
AGCACTGGTTGGGTACTGTCAGAATTATGTGGTCATGTCAGCAGCCCTGA
back to top