mRNA_H-elongata_contig166987.4190.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166987.4190.1
Unique NamemRNA_H-elongata_contig166987.4190.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: A0A026WCF6_OOCBI (Zinc finger BED domain-containing protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WCF6_OOCBI)

HSP 1 Score: 116 bits (290), Expect = 5.760e-26
Identity = 84/284 (29.58%), Postives = 144/284 (50.70%), Query Frame = 1
Query:    4 KAIPLACATRWNSHLTQAKVILENKLQV--LLALETANSAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMM-PMLCDALDVHLTLKATDN-----LPEHIIGAANDMFDAFGDRFDAPT-NAQLIAAFCDLRTKDLIWCKRNVRENKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAVEMNASPASAEAELLRYDQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFLH 828
            K +  +C TRWNS     + +++N++ V  +L+  T  S+    ++  +E DWI    ++++L+    A+T L  D+    S+  P++   LD H+ +   D+     L E ++    D F    D  ++P      +A+F   R+KDL+     VR +K    +  K       HE+   T    L +   + N++  + + +L  Y   P +   S      EWW +H+  +P + ++A  YLA+PA+SA SER+FSTAG +VT KR+ L P+ V +LVFL+
Sbjct:  210 KKLIQSCRTRWNSTYFMLERLIQNRIPVETVLSNRTVTSSAVAQKLEVSEYDWILMENLIKVLKLLQMAITFLCSDTMSPTSITRPIIRTVLDNHIQINEDDDNIIHQLKETVVSDLTDRFRLNWDESESPNITINQLASFLYPRSKDLLAEPVAVR-SKIRSIIAEKIHHEETQHEEAENTQINCL-DFLFQTNSNVNNPQTQLSHYLAEPQI---SHNMDPYEWWKNHEKRYPSIAKLAKTYLAIPASSAGSERVFSTAGNIVTAKRSCLLPKHVNQLVFLY 488          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: UPI001A9DD6B7 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9DD6B7)

HSP 1 Score: 113 bits (282), Expect = 7.400e-25
Identity = 87/282 (30.85%), Postives = 139/282 (49.29%), Query Frame = 1
Query:   19 ACATRWNSHLTQAKVILENK--LQVLLALETANSAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHLTLKATDNLPEHIIGAANDM--------FDAFGDRFDAPTNAQLIAAFCDLRTKDLIWCKRNVRENKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAVEMNASPASAE--AELLRYDQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFLH 828
            +C TRWNS       +++N+  ++ +L   T  +A     +   E++W  T  + +LLEP   A TVL  D+    SM+  +  AL + L  + TD   + ++G   ++        F    D  ++   A+  A+F D R KDL   + +  +      + L      ++ E G  TS    T      N  P+S++  A+   Y   P L         L+WW DH+ +FP + ++A  Y+ +PA+SASSER+FSTAG +VT KR+ L PE+V  LVFL+
Sbjct:  214 SCPTRWNSTYQMLTKLIKNRPAIESVLVDRTVVTAKVAQNLEICEQEWDTTRELCDLLEPLYLATTVLCSDTASPVSMVRPVKRALVLKLEPQFTD---DPLLGRFKEVVRVEIIRRFSMEWDPRESAVCARQRASFLDPRYKDLQCEEPSATQEIRTNIMNLLRDTTPSVGEDGASTSQPQATALERLFNTQPSSSDLSAQFEAYLSEPQLGHNLDA---LKWWRDHESKFPAVAQLAMKYMCIPASSASSERVFSTAGNIVTAKRSCLLPENVSSLVFLY 489          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: A0A6J1SJC7_FRAOC (zinc finger BED domain-containing protein 1-like n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SJC7_FRAOC)

HSP 1 Score: 113 bits (283), Expect = 9.890e-25
Identity = 93/291 (31.96%), Postives = 137/291 (47.08%), Query Frame = 1
Query:   19 ACATRWNSHLTQAKVILENKLQVLLALETAN--SAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFIT-NSMMPMLCDALDVHLTLK-----ATDNLPEHIIGAANDMFDAFGDRFDA------PTNAQLIAAFCDLRTKDLIWCKRNVRENKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAV-------EMNASPASA-EAELLRYDQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFL 825
            +C+TRW+S     K + E++  V   L   N  +A +   +  + ++W    A++  L+P   A TVL  D  +T +++ P++   LDVH  L        D   EH+     ++  +  +RF+       P   Q +AAF D R KDL   + +  E +  RD+  + M G A     +   G     G+        E  A+ A   +AE   Y   P +   S  +  L WW   +  +P L R+A  YLAVPATSASSER FSTAG  V   R+ L PE+V  LVFL
Sbjct:  341 SCSTRWDSTYLMCKSLTESRAPVCAVLSDRNVTTAKQSRTLQMSAEEWAELEAMLPALKPLQVATTVLCADDKVTVSTVRPVVRSLLDVHFKLDDEGLLELDPCEEHVRDFKVEVSRSLTERFNMDASAVRPVEVQQLAAFLDPRYKDLR-AEPSPAEAEKIRDLAKQKMAGEAAVAVDQDAEGEAPAAGSGLDFLFCGEAEAAGARTWQAEYAEYVAEPQI---SHNQCPLTWWKTRQKRYPTLARLARRYLAVPATSASSERDFSTAGNTVRPNRSCLLPENVSILVFL 627          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: A0A6P7WEL1_IXOSC (zinc finger BED domain-containing protein 4-like n=2 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7WEL1_IXOSC)

HSP 1 Score: 103 bits (257), Expect = 2.030e-22
Identity = 90/286 (31.47%), Postives = 137/286 (47.90%), Query Frame = 1
Query:   28 TRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHLTLKATDNLPEHIIGAANDMFDAFGDRFDAPTNAQLIAA--FCDLRTKDLIWCKRNVRENKHYRDVTLKAMIGMALHEK----GRKTSGG-----------VLTEGAVEMNASPASAEA-ELLRYDQVPTLDPGSSGKRVLEWW-VDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFLH 828
            TRWNS     K ++  KL+V +++E +      P    +  +W   AA+V++L+PF +A   L GDS+ T S +  L +   V L+  +TD         A+ +  +   RF      +L+A     D R KD   C     E K  R +  KA+   A  ++      +TSGG           V T  + + +  P    A E + Y + P L   +  +  L WW    +H +P L RVA  YL++PAT   SER+FS+AG +V+ +R  L P+ VQ+LVFLH
Sbjct:   20 TRWNSEHAMMKRLV--KLRVPVSVELSECDTVEP---LSASEWRLMAAVVQVLQPFEQATAELSGDSYSTLSQVIPLLECTKVVLSRHSTDEAGS----VASSLIQSIKTRFPDGKMCRLLALSMLVDPRYKD--GCYTGEAEKKWARTLLTKAVEESASVDEPSDAAAETSGGIGDSLGDTLWDVFTSLSSDTHQKPGHEFATEAIEYLKTPVL---ARTEDPLAWWRCRGRHLYPSLVRVARRYLSIPATQTRSERLFSSAGSIVSCRRELLLPDHVQQLVFLH 291          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: A0A6G0TAH7_APHGL (Dimer_Tnp_hAT domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A6G0TAH7_APHGL)

HSP 1 Score: 106 bits (265), Expect = 2.400e-22
Identity = 88/295 (29.83%), Postives = 136/295 (46.10%), Query Frame = 1
Query:   19 ACATRWNSHLTQAKVILENKLQV--LLALETANSAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMM-PMLCDALDVHLTLKATDNLPEHIIGAANDMFDAFGDRFDAPT-----NAQLIAAFCDLRTKDL----------IWCK-------RNVRENKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAVEMNASPASAEAELLRYDQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFLH 828
            +C TRW+S       +  N+  V  +LA  +  +     ++  +E DW     +V LL+P     TV  G++    SM+ P++   ++ HL +   D+  E ++     +     +RF         +++ +A+F D R KDL          I CK        N  EN+   +V ++   G   +  G +    V     V        AE +L RYD     DP        EWW  H+ ++PL+   A  +L++PATS SSER FSTAG VVT KRN L+PE+V  L+FL+
Sbjct:  341 SCKTRWDSVYMMLDRLYTNRCAVTNVLADRSITNVAIAKKLDISECDWTKMETVVALLKPLQVVTTVFCGETHSPGSMVRPLISKVIEKHLKINTYDS--EVVVSFKQTVVSQLIERFKLNNLTNIISSRQVASFLDPRYKDLEHEEIEVRENIRCKVQNLLVETNTSENRVDNEVPIQKKKGALEYLYGDE----VHEVNDVSTQFQCYLAEPQL-RYD----FDP-------FEWWKSHEKKYPLVAMAAKKFLSIPATSVSSERCFSTAGNVVTPKRNSLAPENVNMLIFLY 617          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: UPI0018999060 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018999060)

HSP 1 Score: 105 bits (261), Expect = 2.460e-22
Identity = 80/285 (28.07%), Postives = 141/285 (49.47%), Query Frame = 1
Query:    1 TKAIPLACATRWNSHLTQAKVILENK--LQVLLALETANSAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHLTLKATDNLP-----EHIIGAANDMFDAFGDRFDAPTNAQLIAAFCDLRTKDLIWCKRNVRENKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAVEMNASPASAE--AELLRYDQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFLH 828
            T+ +  +C TRW+S   +   +++++  +Q +LA  T  +A     +  ++++W   + + E+LEP   A T+L  D+    SM+  +  A+   L   +TD+       E +    +  F    D   +  +A+  A+F D R K L + + + RE        +      ++ E G  T+    T   + +N  P  ++  A+   Y   P L         L+WW D++ +FPL+  +A  Y+ +PA+SASSER+F TAG ++T KR+ L PE+V  LVFL+
Sbjct:  109 TERLTQSCPTRWSSTYEKLTKLIKHRSAIQSVLADRTIVTAKTAQNLEISQQEWNVVSELCEVLEPLHLATTILCSDTMSLVSMVRPVMKAVMKKLEHHSTDDFQVDDFKEVVRMEISRRFSLDWDAQQSSVSARQRASFLDPRYKWLQYEEPDARETIRTNVTEMLNDFTSSVDESGMGTTQTEATALDILLNEQPRVSDLSAQFDAYLSEPQLGHNLDA---LKWWKDNESKFPLVAELAKKYMCIPASSASSERVFLTAGNIITAKRSCLLPENVSCLVFLY 390          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: A0A3L8DEH6_OOCBI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A3L8DEH6_OOCBI)

HSP 1 Score: 106 bits (265), Expect = 2.550e-22
Identity = 78/275 (28.36%), Postives = 136/275 (49.45%), Query Frame = 1
Query:    4 KAIPLACATRWNSHLTQAKVILENKLQV--LLALETANSAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMM-PMLCDALDVHLTLKATDN-----LPEHIIGAANDMFDAFGDRFDAPT-NAQLIAAFCDLRTKDLIWCKRNVRENKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAVEMNASPASAEAELLRYDQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPE 801
            K +  +C TRWNS     + +++N++ V  +L+  T  S+    ++  +E DWI    ++++L+    A+T L  D+    S+  P++   LD H+ +   D+     L E ++    D F    D  ++P      +A+F   R+KDL+     VR +K    +  K       HE+   T    L +   + N++  + + +L  Y   P +   S      EWW +H+  +P + ++A  YLA+PA+SA SER+FSTAG +VT KR+   P+
Sbjct:  372 KKLIQSCRTRWNSTYFMLERLIQNRIPVETVLSNRTVTSSAVAQKLEVSEYDWILMENLIKVLKLLQMAITFLCSDTMSPTSITRPIIRTVLDNHIQINEDDDNIIHQLKETVVSDLTDRFRLNWDESESPNITINQLASFLYPRSKDLLAEPVAVR-SKIRSIIAEKIHHEETQHEEAENTQINCL-DFLFQTNSNVNNPQTQLSHYLAEPQI---SHNMDPYEWWKNHEKRYPSIAKLAKTYLAIPASSAGSERVFSTAGNIVTAKRSSSDPD 641          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: UPI0018935EA0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018935EA0)

HSP 1 Score: 103 bits (258), Expect = 1.400e-21
Identity = 80/285 (28.07%), Postives = 136/285 (47.72%), Query Frame = 1
Query:    1 TKAIPLACATRWNSHLTQAKVILENK--LQVLLALETANSAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHLTLKAT-----DNLPEHIIGAANDMFDAFGDRFDAPTNAQLIAAFCDLRTKDLIWCKRNVRENKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAVEMNASP--ASAEAELLRYDQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFLH 828
            T+ +  +C TRW+S       +++++  +Q +LA  T  +A     +  ++++W   + + E+LEP   A  +L  D+    SM+  +  AL   L  + +     +N  E I    +  F    D      +A+  A+F D R K L +     RE        +   +  +  + G  T+    T   +  +A P  +   A+   Y   P +   S     L+WW DH+ +FP L  +A  Y+ +PA+SASSER+FS+AG ++T KR+ L PE+V  LVFL+
Sbjct:  208 TERLTQSCPTRWSSTYQMLAKLIKHRPAIQSVLADRTIVTANSAQNLEISQQEWNVISELCEVLEPLQLATNILCSDTVSPVSMVRPVMKALIKKLEPQTSGDHLVENFKEIIRLEISRRFSLDWDAQPRSVSARQRASFLDPRYKSLQYEVPGAREAIRANVREMLDDLATSDDQSGTDTTQTEATALDILFDAQPRVSGLSAQFEAYLSEPQIGHNSDA---LKWWKDHESKFPRLAELAKKYMCIPASSASSERVFSSAGNIITAKRSSLLPENVSSLVFLY 489          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: A0A1A8UYZ5_NOTFU (Uncharacterized protein (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8UYZ5_NOTFU)

HSP 1 Score: 102 bits (255), Expect = 2.710e-21
Identity = 87/302 (28.81%), Postives = 129/302 (42.72%), Query Frame = 1
Query:   25 ATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTEKD-WINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHLTLKATDNLPEHII--GAANDMFDAFGDRFDA----PTNAQLIAAFCDLRTKDLIWC------KRNVRENKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAVEMNASPASAEAELLRYDQVPTLDPGSSGKRV---------------------LEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFLH 828
            A RWNS     + +LE +  V+  L      P+G +    + D WI    + E+L+P+ +A  VL G S++T S++P L   L      K+ D+   +I    A  ++   +     A      N  LIAA  D R + L +       K  VR  K   D+  +    +     G++ S    T+    ++    +   E    D    +D G  G+                       L WW ++   FP L  +A  YLAVPATS  SER+FS AG +VTKKR  L+ E V+ L FLH
Sbjct:  151 AVRWNSSYYMIERLLEQRWPVVATLSDPEVTPRGKQYLDLKNDQWILLGELKEVLKPYEQATNVLSGQSYVTASVLPPLLKGLLKSTQNKSFDSAAVNIFQNSAEEEIMSRWQPEVSAFQEDGKNVSLIAAALDPRFRKLKFLSPEDALKLQVRVQKDALDLKREQRSQLQQATVGQEASASPPTKKRSVLDTLLGTDSEE---EDCNENIDQGGDGENETVRKEVLLYFGEAPIPRDNDPLTWWKNNATRFPTLATLAKSYLAVPATSTPSERLFSVAGNIVTKKRASLTAEHVEMLTFLH 449          
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Match: UPI00168D7D3B (zinc finger BED domain-containing protein 1 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=UPI00168D7D3B)

HSP 1 Score: 102 bits (253), Expect = 5.200e-21
Identity = 89/299 (29.77%), Postives = 132/299 (44.15%), Query Frame = 1
Query:   25 ATRWNSHLTQAKVILENKLQVLLAL---ETANSAPKGPRICYTEKDWINTAAIVELLEPFAEAVTVLQGDSFITNSMM-PMLCDALDVHLTLKATDNLP---EHIIGAANDMFDAFGDRFDAPT--NAQLIAAFCDLRTKDLIWCKRNVRENKHYRDVTLKAM---------IGMALHEKGRKTS--------------GGVLTEGAVEMNASPASAEAELLRYDQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIFSTAGKVVTKKRNRLSPESVQKLVFL 825
            ATRWNS     +  LE +  +  AL   +       G     TE D      + + L+P  EA  ++  DS  T S+  P+L   L       A D+ P   E  +    D+      R+ +    N+ LI++  D R K L +  R  ++  H + VT  A          +G    +   + S              G   TE  V    +   AE EL +Y + P L   S  +  L+WW  H+  FPLL ++A  YL +P TS ++ER+FSTAG +VT +R+ LSP+ V +LVFL
Sbjct:  147 ATRWNSAYEMVERFLEQQPAICAALLSPQVRKGGSSGDICTLTENDISTAEEMAKALKPLKEATNIMSEDSSPTLSVTAPLLAQLLHDTKASSAEDDAPLVQEIKVAIHEDL----SKRYTSVQMKNSLLISSTLDPRFKALPFLSREEQQLIHGKVVTEAAALEKDVGPAAVGAENPDTTEEESPPAPKRASALVSLLGKTFTEVNVVPKTTSTKAEEELKKYLEAPPL---SLAENPLQWWSSHEAAFPLLGKLAKRYLCIPGTSVAAERVFSTAGDIVTAQRSNLSPDHVDQLVFL 438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166987.4190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A026WCF6_OOCBI5.760e-2629.58Zinc finger BED domain-containing protein n=1 Tax=... [more]
UPI001A9DD6B77.400e-2530.85E3 SUMO-protein ligase ZBED1-like n=2 Tax=Ixodes s... [more]
A0A6J1SJC7_FRAOC9.890e-2531.96zinc finger BED domain-containing protein 1-like n... [more]
A0A6P7WEL1_IXOSC2.030e-2231.47zinc finger BED domain-containing protein 4-like n... [more]
A0A6G0TAH7_APHGL2.400e-2229.83Dimer_Tnp_hAT domain-containing protein n=5 Tax=Eu... [more]
UPI00189990602.460e-2228.07E3 SUMO-protein ligase ZBED1-like n=2 Tax=Dermacen... [more]
A0A3L8DEH6_OOCBI2.550e-2228.36Dimer_Tnp_hAT domain-containing protein n=2 Tax=Oo... [more]
UPI0018935EA01.400e-2128.07E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicep... [more]
A0A1A8UYZ5_NOTFU2.710e-2128.81Uncharacterized protein (Fragment) n=1 Tax=Nothobr... [more]
UPI00168D7D3B5.200e-2129.77zinc finger BED domain-containing protein 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166987contigH-elongata_contig166987:410..1390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score98.6
Seed ortholog evalue4.8e-18
Seed eggNOG ortholog7668.SPU_018157-tr
EggNOG free text desc.Zinc finger BED domain-containing protein
EggNOG OGs39SKR@33154,3BBS9@33208,3CUF3@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size828
Cds size828
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.6270213-CDS-H-elongata_contig166987:409..6611622929975.6270213-CDS-H-elongata_contig166987:409..661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166987 410..661 -
1691679231.1646848-CDS-H-elongata_contig166987:409..6611691679231.1646848-CDS-H-elongata_contig166987:409..661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166987 410..661 -
1622929975.6422856-CDS-H-elongata_contig166987:814..13901622929975.6422856-CDS-H-elongata_contig166987:814..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166987 815..1390 -
1691679231.18365-CDS-H-elongata_contig166987:814..13901691679231.18365-CDS-H-elongata_contig166987:814..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166987 815..1390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166987.4190.1prot_H-elongata_contig166987.4190.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166987 410..1390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166987.4190.1

>prot_H-elongata_contig166987.4190.1 ID=prot_H-elongata_contig166987.4190.1|Name=mRNA_H-elongata_contig166987.4190.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=276bp
TKAIPLACATRWNSHLTQAKVILENKLQVLLALETANSAPKGPRICYTEK
DWINTAAIVELLEPFAEAVTVLQGDSFITNSMMPMLCDALDVHLTLKATD
NLPEHIIGAANDMFDAFGDRFDAPTNAQLIAAFCDLRTKDLIWCKRNVRE
NKHYRDVTLKAMIGMALHEKGRKTSGGVLTEGAVEMNASPASAEAELLRY
DQVPTLDPGSSGKRVLEWWVDHKHEFPLLYRVACIYLAVPATSASSERIF
STAGKVVTKKRNRLSPESVQKLVFLH
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mRNA from alignment at H-elongata_contig166987:410..1390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166987.4190.1 ID=mRNA_H-elongata_contig166987.4190.1|Name=mRNA_H-elongata_contig166987.4190.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at H-elongata_contig166987:410..1390- (Himanthalia elongata Himel1 dioecious)
ACTAAGGCGATTCCGCTGGCTTGCGCTACACGATGGAACTCTCACCTGAC CCAGGCGAAGGTGATTCTGGAGAACAAATTGCAGGTGCTGCTAGCGCTTG AGACTGCAAACAGCGCCCCGAAGGGACCACGAATTTGCTACACAGAGAAA GACTGGATTAACACAGCCGCCATTGTAGAGCTCCTGGAGCCGTTCGCCGA AGCTGTAACCGTCTTGCAGGGTGACTCCTTCATCACCAACAGCATGATGC CCATGCTGTGTGACGCACTAGATGTGCACTTGACGCTGAAAGCTACGGAC AACTTGCCTGAGCATATCATAGGCGCTGCAAACGACATGTTCGACGCCTT TGGGGATCGGTTTGATGCGCCAACCAACGCGCAGCTGATCGCAGCCTTCT GCGACCTGCGCACGAAAGACCTCATCTGGTGCAAGCGCAACGTGAGGGAG AATAAGCACTACCGCGACGTTACTCTGAAGGCCATGATCGGTATGGCACT TCACGAGAAAGGGAGGAAGACGAGCGGTGGCGTGCTAACTGAGGGAGCTG TGGAGATGAATGCATCCCCAGCTTCCGTGGACGGCCGGAAGCGGAAATCC ACAGAGTCAGGTCTGCTTTTCAAGACCATGCTCAAGAGACACGCAACGAT GGAAGACGACGACGACCCCGCTGGAGCAAGCGGATCCGGTGAGAACCCTC AGACCATCGCGGCTCACACCGTCCAGAAGGCTGAGGCGGAACTGTTGCGA TACGATCAGGTGCCCACCCTGGATCCGGGAAGCAGCGGCAAACGGGTGCT CGAGTGGTGGGTCGACCACAAGCATGAATTCCCGCTGCTGTACAGAGTGG CATGTATCTACCTCGCAGTGCCCGCCACTTCAGCATCATCAGAGCGCATC TTCTCTACAGCGGGGAAGGTCGTGACGAAGAAGAGGAACAGACTGTCGCC CGAGTCTGTTCAAAAATTGGTTTTCCTCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig166987:410..1390-

>mRNA_H-elongata_contig166987.4190.1 ID=mRNA_H-elongata_contig166987.4190.1|Name=mRNA_H-elongata_contig166987.4190.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1656bp|location=Sequence derived from alignment at H-elongata_contig166987:410..1390- (Himanthalia elongata Himel1 dioecious)
ACTAAGGCGATTCCGCTGGCTTGCGCTACACGATGGAACTCTCACCTGAC
CCAGGCGAAGGTGATTCTGGAGAACAAATTGCAGGTGCTGCTAGCGCTTG
AGACTGCAAACAGCGCCCCGAAGGGACCACGAATTTGCTACACAGAGAAA
GACTGGATTAACACAGCCGCCATTGTAGAGCTCCTGGAGCCGTTCGCCGA
AGCTGTAACCGTCTTGCAGGGTGACTCCTTCATCACCAACAGCATGATGC
CCATGCTGTGTGACGCACTAGATGTGCACTTGACGCTGAAAGCTACGGAC
AACTTGCCTGAGCATATCATAGGCGCTGCAAACGACATGTTCGACGCCTT
TGGGGATCGGTTTGATGCGCCAACCAACGCGCAGCTGATCGCAGCCTTCT
GCGACCTGCGCACGAAAGACCTCATCTGGTGCAAGCGCAACGTGAGGGAG
AATAAGCACTACCGCGACGTTACTCTGAAGGCCATGATCGGTATGGCACT
TCACGAGAAAGGGAGGAAGACGAGCGGTGGCGTGCTAACTGAGGGAGCTG
TGGAGATGAATGCATCCCCAGCTTCCACTAAGGCGATTCCGCTGGCTTGC
GCTACACGATGGAACTCTCACCTGACCCAGGCGAAGGTGATTCTGGAGAA
CAAATTGCAGGTGCTGCTAGCGCTTGAGACTGCAAACAGCGCCCCGAAGG
GACCACGAATTTGCTACACAGAGAAAGACTGGATTAACACAGCCGCCATT
GTAGAGCTCCTGGAGCCGTTCGCCGAAGCTGTAACCGTCTTGCAGGGTGA
CTCCTTCATCACCAACAGCATGATGCCCATGCTGTGTGACGCACTAGATG
TGCACTTGACGCTGAAAGCTACGGACAACTTGCCTGAGCATATCATAGGC
GCTGCAAACGACATGTTCGACGCCTTTGGGGATCGGTTTGATGCGCCAAC
CAACGCGCAGCTGATCGCAGCCTTCTGCGACCTGCGCACGAAAGACCTCA
TCTGGTGCAAGCGCAACGTGAGGGAGAATAAGCACTACCGCGACGTTACT
CTGAAGGCCATGATCGGTATGGCACTTCACGAGAAAGGGAGGAAGACGAG
CGGTGGCGTGCTAACTGAGGGAGCTGTGGAGATGAATGCATCCCCAGCTT
CCGCTGAGGCGGAACTGTTGCGATACGATCAGGTGCCCACCCTGGATCCG
GGAAGCAGCGGCAAACGGGTGCTCGAGTGGTGGGTCGACCACAAGCATGA
ATTCCCGCTGCTGTACAGAGTGGCATGTATCTACCTCGCAGTGCCCGCCA
CTTCAGCATCATCAGAGCGCATCTTCTCTACAGCGGGGAAGGTCGTGACG
AAGAAGAGGAACAGACTGTCGCCCGAGTCTGTTCAAAAATTGGTTTTCCT
CCATGCTGAGGCGGAACTGTTGCGATACGATCAGGTGCCCACCCTGGATC
CGGGAAGCAGCGGCAAACGGGTGCTCGAGTGGTGGGTCGACCACAAGCAT
GAATTCCCGCTGCTGTACAGAGTGGCATGTATCTACCTCGCAGTGCCCGC
CACTTCAGCATCATCAGAGCGCATCTTCTCTACAGCGGGGAAGGTCGTGA
CGAAGAAGAGGAACAGACTGTCGCCCGAGTCTGTTCAAAAATTGGTTTTC
CTCCAT
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