mRNA_H-elongata_contig166907.4187.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166907.4187.1
Unique NamemRNA_H-elongata_contig166907.4187.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A6H5KRN7_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRN7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.300e-22
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   49 VERQQNVSWKRWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLHGVEVIPLLLPGRL 228
            VE +  ++W+ WVDL HRV  ASARLFCCPWAGGNS  F+ W   L GVEV+PLLLPGRL
Sbjct:   98 VEHEHILAWRAWVDLRHRVPKASARLFCCPWAGGNSLMFERWSEELPGVEVVPLLLPGRL 157          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A7S3UXQ5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXQ5_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 4.200e-8
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   52 ERQQNVS-WKRWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLHGVEVIPLLLPGRL 228
            E+QQ+ S WK+W        +A  RLFC PWAGGNS+++  W       E++ + LPGR+
Sbjct:   62 EKQQDFSNWKKWFICRCERPDAKLRLFCLPWAGGNSTSYARWHEAFPDYEIVSVELPGRM 121          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: UPI0018930B93 (thioesterase II family protein n=1 Tax=Methylobacter sp. BlB1 TaxID=2785914 RepID=UPI0018930B93)

HSP 1 Score: 57.0 bits (136), Expect = 9.190e-8
Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 1
Query:   82 WVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLHG-VEVIPLLLPGR 225
            W    +R S A  RLFC P+AGGNSS F AWP      VEV P+ LPGR
Sbjct:   11 WFPSANRKSTAKIRLFCFPYAGGNSSLFSAWPEYFSDLVEVCPVNLPGR 59          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: UPI00200D6783 (alpha/beta fold hydrolase n=1 Tax=Sphaerisporangium sp. NEAU-ZS1 TaxID=2935860 RepID=UPI00200D6783)

HSP 1 Score: 53.1 bits (126), Expect = 1.980e-6
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1
Query:   76 KRWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLH-GVEVIPLLLPGR 225
            +RW+    +   A  RL+C P+AGG +  FD+W   L  GVEV P++LPGR
Sbjct:    6 QRWISWRQQNPAAPVRLYCLPYAGGGTRMFDSWADALGPGVEVCPVVLPGR 56          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A117NX39_9ACTN (PKS_TE domain-containing protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A117NX39_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 2.900e-6
Identity = 25/50 (50.00%), Postives = 30/50 (60.00%), Query Frame = 1
Query:   79 RWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLH-GVEVIPLLLPGR 225
            RW        +A+ RLFC P+AGG SS F  W   L  G+EV P+LLPGR
Sbjct:   15 RWTVARPARPDAAVRLFCFPYAGGGSSIFRNWHTHLDDGIEVCPVLLPGR 64          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A7W5YTR3_9ACTN (Surfactin synthase thioesterase subunit n=2 Tax=Streptosporangiaceae TaxID=2004 RepID=A0A7W5YTR3_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 3.700e-6
Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 1
Query:   70 SWKRWVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLH-GVEVIPLLLPGR 225
            S  RW  +      A  +LFC PWAG  + AF  W A    G+EV+P++LPGR
Sbjct:    7 SLDRWFSVPQPRPAAPMQLFCLPWAGAGAGAFQGWAAAAGPGLEVLPMVLPGR 59          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A349L609_9BURK (Putative thioesterase n=1 Tax=Janthinobacterium sp. TaxID=1871054 RepID=A0A349L609_9BURK)

HSP 1 Score: 51.6 bits (122), Expect = 7.600e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  109 NASARLFCCPWAGGNSSAFDAWPARLHGVEVIPLLLPGR 225
            NA  RLF  P+AGG SS +  WPARL GVE++ + LPGR
Sbjct:   15 NAPYRLFTFPFAGGGSSIYRQWPARLPGVELMAVNLPGR 53          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A3S1BUA3_9CYAN (Thioesterase domain-containing protein n=1 Tax=Calothrix desertica PCC 7102 TaxID=232991 RepID=A0A3S1BUA3_9CYAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.430e-5
Identity = 25/53 (47.17%), Postives = 30/53 (56.60%), Query Frame = 1
Query:   82 WVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARL-----HGVEVIPLLLPGR 225
            WV    R   AS RLFC P+AGGN+ +F  W   L     + VEV P+ LPGR
Sbjct:   10 WVTFPKRNYEASLRLFCFPYAGGNAMSFRGWEKTLEKNLFNTVEVCPIELPGR 62          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A127QBY3_9BURK (Alpha/beta hydrolase family protein n=1 Tax=Collimonas pratensis TaxID=279113 RepID=A0A127QBY3_9BURK)

HSP 1 Score: 50.8 bits (120), Expect = 1.490e-5
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 1
Query:   82 WVDLTHRVSNASARLFCCPWAGGNSSAFDAWPARLHGVEVIPLLLPGR 225
            W     +   A  RLF  P+AGG S+ +  WPARL GVEV+ + LPGR
Sbjct:    8 WFSNFSKNIGAPYRLFTFPFAGGGSAIYRQWPARLPGVEVMAVCLPGR 55          
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Match: A0A101P3U1_9ACTN (Thioesterase n=1 Tax=Streptomyces canus TaxID=58343 RepID=A0A101P3U1_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 4.020e-5
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 1
Query:  103 VSNASARLFCCPWAGGNSSAFDAWPARLH-GVEVIPLLLPGR 225
            V +   RL C P+AGG  S +  W ARL  GV+V+P+LLPGR
Sbjct:   24 VDSVPLRLICFPYAGGTPSVYRGWGARLGAGVQVVPVLLPGR 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166907.4187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KRN7_9PHAE2.300e-2266.67Thioesterase domain-containing protein n=2 Tax=Ect... [more]
A0A7S3UXQ5_HETAK4.200e-841.67Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI0018930B939.190e-855.10thioesterase II family protein n=1 Tax=Methylobact... [more]
UPI00200D67831.980e-645.10alpha/beta fold hydrolase n=1 Tax=Sphaerisporangiu... [more]
A0A117NX39_9ACTN2.900e-650.00PKS_TE domain-containing protein n=4 Tax=Streptomy... [more]
A0A7W5YTR3_9ACTN3.700e-643.40Surfactin synthase thioesterase subunit n=2 Tax=St... [more]
A0A349L609_9BURK7.600e-658.97Putative thioesterase n=1 Tax=Janthinobacterium sp... [more]
A0A3S1BUA3_9CYAN1.430e-547.17Thioesterase domain-containing protein n=1 Tax=Cal... [more]
A0A127QBY3_9BURK1.490e-547.92Alpha/beta hydrolase family protein n=1 Tax=Collim... [more]
A0A101P3U1_9ACTN4.020e-552.38Thioesterase n=1 Tax=Streptomyces canus TaxID=5834... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166907contigH-elongata_contig166907:558..791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioesterase
Ec32 orthologEc-24_000940.1
Exons1
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.336204-CDS-H-elongata_contig166907:557..7911622929975.336204-CDS-H-elongata_contig166907:557..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166907 558..791 -
1691679231.056809-CDS-H-elongata_contig166907:557..7911691679231.056809-CDS-H-elongata_contig166907:557..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166907 558..791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166907.4187.1prot_H-elongata_contig166907.4187.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166907 558..791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166907.4187.1

>prot_H-elongata_contig166907.4187.1 ID=prot_H-elongata_contig166907.4187.1|Name=mRNA_H-elongata_contig166907.4187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MRTVSHRLSPLRSTQIVERQQNVSWKRWVDLTHRVSNASARLFCCPWAGG
NSSAFDAWPARLHGVEVIPLLLPGRLK*
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mRNA from alignment at H-elongata_contig166907:558..791-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166907.4187.1 ID=mRNA_H-elongata_contig166907.4187.1|Name=mRNA_H-elongata_contig166907.4187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig166907:558..791- (Himanthalia elongata Himel1 dioecious)
ATGCGCACCGTATCCCATCGTCTATCTCCCCTGCGATCCACACAAATTGT CGAACGCCAGCAAAATGTCTCCTGGAAACGCTGGGTAGATCTCACACACA GAGTGTCCAATGCATCGGCTCGGCTGTTCTGCTGCCCATGGGCCGGAGGT AACAGCTCCGCGTTCGACGCTTGGCCGGCGCGACTACACGGTGTGGAAGT GATACCGTTGCTGCTTCCTGGACGTCTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig166907:558..791-

>mRNA_H-elongata_contig166907.4187.1 ID=mRNA_H-elongata_contig166907.4187.1|Name=mRNA_H-elongata_contig166907.4187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig166907:558..791- (Himanthalia elongata Himel1 dioecious)
ATGCGCACCGTATCCCATCGTCTATCTCCCCTGCGATCCACACAAATTGT
CGAACGCCAGCAAAATGTCTCCTGGAAACGCTGGGTAGATCTCACACACA
GAGTGTCCAATGCATCGGCTCGGCTGTTCTGCTGCCCATGGGCCGGAGGT
AACAGCTCCGCGTTCGACGCTTGGCCGGCGCGACTACACGGTGTGGAAGT
GATACCGTTGCTGCTTCCTGGACGTCTCAAGTGAATGCGCACCGTATCCC
ATCGTCTATCTCCCCTGCGATCCACACAAATTGTCGAACGCCAGCAAAAT
GTCTCCTGGAAACGCTGGGTAGATCTCACACACAGAGTGTCCAATGCATC
GGCTCGGCTGTTCTGCTGCCCATGGGCCGGAGGTAACAGCTCCGCGTTCG
ACGCTTGGCCGGCGCGACTACACGGTGTGGAAGTGATACCGTTGCTGCTT
CCTGGACGTCTCAAGTGA
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