mRNA_H-elongata_contig166886.4186.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166886.4186.1
Unique NamemRNA_H-elongata_contig166886.4186.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.810e-12
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    7 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA 171
            K+ ++RTDGGGE+ GQF       GIK+E  PP+TP+YNGV +RALGL+ D  +A
Sbjct:   84 KVYIVRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAALA 138
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.330e-12
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    7 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA 171
            K+ + RTDGGGE+ GQF     + GIK+E  PP+TP+YNGV +RALGL+ D  +A
Sbjct:  461 KVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 515
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 7.560e-12
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    7 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVALLRGVMEGKNDR-----LWEEAMAYA 234
            ++ V RTDGGGE+ GQF     + GIK+E  PP TP+YNGV +RALGL+ D  +A      E   D      LW EA++ A
Sbjct:   53 EVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCA 133
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.760e-11
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    7 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVALLRGVMEGKNDR-----LWEEAMAYA 234
            ++ V RTDGGGE+ GQF     + GIK+E  PP TP+YNGV +RALGL+ D  +A      E   D      LW EA++ A
Sbjct:  257 EVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCA 337
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.860e-11
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    7 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA 171
            ++ + RTDGGGE+ GQF     + GIK E  PP+TP+YNGV +RALGL+ D  +A
Sbjct:   84 EVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALA 138
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.570e-11
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 234
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+    +A       L   V   K DRLW EAM +A
Sbjct:   44 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWA 124
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.820e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   16 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 234
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+ +  +A       L   V   K D+LW EAM +A
Sbjct:  378 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWA 458
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.980e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   16 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 234
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+ +  +A       L   V   K D+LW EAM +A
Sbjct:  256 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWA 336
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.000e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   16 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 234
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+ +  +A       L   V   K D+LW EAM +A
Sbjct:   44 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWA 124
[Close]
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.060e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   16 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 234
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+ +  +A       L   V   K D+LW EAM +A
Sbjct:  311 IVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWA 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2T3_9PHAE3.810e-1254.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN8_9PHAE5.330e-1254.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE7.560e-1245.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE1.760e-1145.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE1.860e-1152.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWE4_9PHAE7.570e-1144.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE8.820e-1143.21Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L3Y0_9PHAE8.980e-1143.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE9.000e-1143.21Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE9.060e-1143.21Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166886contigH-elongata_contig166886:1021..1254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.2464569-CDS-H-elongata_contig166886:1020..12541622929975.2464569-CDS-H-elongata_contig166886:1020..1254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166886 1021..1254 -
1691679231.0431952-CDS-H-elongata_contig166886:1020..12541691679231.0431952-CDS-H-elongata_contig166886:1020..1254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166886 1021..1254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166886.4186.1prot_H-elongata_contig166886.4186.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166886 1021..1254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166886.4186.1

>prot_H-elongata_contig166886.4186.1 ID=prot_H-elongata_contig166886.4186.1|Name=mRNA_H-elongata_contig166886.4186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
ALKIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGL
VRDKTVALLRGVMEGKNDRLWEEAMAYA
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mRNA from alignment at H-elongata_contig166886:1021..1254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166886.4186.1 ID=mRNA_H-elongata_contig166886.4186.1|Name=mRNA_H-elongata_contig166886.4186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig166886:1021..1254- (Himanthalia elongata Himel1 dioecious)
GCCCTCAAGATCGGCGTCATCCGCACAGACGGTGGGGGAGAATGGCACGG
CCAGTTCCTGTCTTTCCTGAGTAAACTCGGAATCAAGCGCGAGTCCGCAC
CCCCATATACCCCCCAATACAATGGCGTCGTGAAGCGCGCTCTGGGGCTA
GTGCGCGACAAGACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAA
CGACCGTCTATGGGAGGAAGCTATGGCATACGCA
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Coding sequence (CDS) from alignment at H-elongata_contig166886:1021..1254-

>mRNA_H-elongata_contig166886.4186.1 ID=mRNA_H-elongata_contig166886.4186.1|Name=mRNA_H-elongata_contig166886.4186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig166886:1021..1254- (Himanthalia elongata Himel1 dioecious)
GCCCTCAAGATCGGCGTCATCCGCACAGACGGTGGGGGAGAATGGCACGG
CCAGTTCCTGTCTTTCCTGAGTAAACTCGGAATCAAGCGCGAGTCCGCAC
CCCCATATACCCCCCAATACAATGGCGTCGTGAAGCGCGCTCTGGGGCTA
GTGCGCGACAAGACCGTGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAA
CGACCGTCTATGGGAGGAAGCTATGGCATACGCAGCCCTCAAGATCGGCG
TCATCCGCACAGACGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTC
CTGAGTAAACTCGGAATCAAGCGCGAGTCCGCACCCCCATATACCCCCCA
ATACAATGGCGTCGTGAAGCGCGCTCTGGGGCTAGTGCGCGACAAGACCG
TGGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAACGACCGTCTATGGGAG
GAAGCTATGGCATACGCA
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