mRNA_H-elongata_contig166761.4182.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166761.4182.1
Unique NamemRNA_H-elongata_contig166761.4182.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A7S3ACN8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ACN8_9EUKA)

HSP 1 Score: 131 bits (330), Expect = 6.010e-38
Identity = 59/69 (85.51%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEK 207
            QE++R++GLSATLPNYEDVATFL+V+P+KGLFYFDNS+RPVPLQQQYIG+TEKKAIKRFQLMNEI YEK
Sbjct:   12 QEMIRVIGLSATLPNYEDVATFLRVSPDKGLFYFDNSFRPVPLQQQYIGITEKKAIKRFQLMNEIVYEK 80
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.100e-37
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 210
            QE+VRIVGLSATLPNYEDVATFL VNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV
Sbjct:  690 QEMVRIVGLSATLPNYEDVATFLNVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 759
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 139 bits (349), Expect = 1.800e-36
Identity = 64/70 (91.43%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 210
            QE+VRIVGLSATLPNYEDVATFL+VNP+KGLF+FDNSYRPVPLQQQYIG+TE+KAIKRFQLMNEICYEKV
Sbjct:  237 QEMVRIVGLSATLPNYEDVATFLRVNPDKGLFFFDNSYRPVPLQQQYIGITERKAIKRFQLMNEICYEKV 306
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.800e-36
Identity = 64/70 (91.43%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 210
            QE+VRIVGLSATLPNYEDVATFL+VNP+KGLF+FDNSYRPVPLQQQYIG+TE+KAIKRFQLMNEICYEKV
Sbjct:  676 QEMVRIVGLSATLPNYEDVATFLRVNPDKGLFFFDNSYRPVPLQQQYIGITERKAIKRFQLMNEICYEKV 745
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A7S0HVE9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HVE9_9EUKA)

HSP 1 Score: 129 bits (323), Expect = 1.010e-35
Identity = 58/69 (84.06%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEK 207
            QE++R+VGLSATLPNYEDVATFL+V P+KGL+YFDNSYRPVPLQQQYIG+TEKKA KRFQLMNEI Y+K
Sbjct:   93 QEMIRVVGLSATLPNYEDVATFLRVKPDKGLYYFDNSYRPVPLQQQYIGITEKKATKRFQLMNEIVYDK 161
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A3R6YI29_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YI29_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.000e-35
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 210
            Q++VR+VGLSATLPNYEDVA FL+VNPEKGLFYFD+SYRPVPLQQQYIG+ EKKA+KR Q+MNEICYEKV
Sbjct:  205 QQMVRLVGLSATLPNYEDVAAFLRVNPEKGLFYFDSSYRPVPLQQQYIGIMEKKAMKRHQMMNEICYEKV 274
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A6A5AAG8_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AAG8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 6.330e-35
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 210
            Q++VR+VGLSATLPNYEDVA FL+VNPEKGLFYFD+SYRPVPLQQQYIG+ EKKA+KR Q+MNEICYEKV
Sbjct:  158 QQMVRLVGLSATLPNYEDVAAFLRVNPEKGLFYFDSSYRPVPLQQQYIGIMEKKAMKRHQMMNEICYEKV 227
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A7S4F5U3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F5U3_CHRCT)

HSP 1 Score: 134 bits (337), Expect = 7.490e-35
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEK 207
            QE++R+VGLSATLPN+EDVATFL+VNP+KGLFYFDNSYRPVPLQQQYIG+TEKKAIKRFQLMNEI YEK
Sbjct:  659 QEMIRVVGLSATLPNFEDVATFLRVNPDKGLFYFDNSYRPVPLQQQYIGITEKKAIKRFQLMNEIAYEK 727
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: A0A7S4DAU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAU8_HETAK)

HSP 1 Score: 133 bits (335), Expect = 1.390e-34
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 210
            QE+VR+VGLSATLPNYEDVA FL+V P+KGLFYFDNS+RPVPLQQQYIG+TEKKA+KRFQLMNEICYEKV
Sbjct:    1 QEMVRLVGLSATLPNYEDVAHFLRVKPDKGLFYFDNSFRPVPLQQQYIGITEKKALKRFQLMNEICYEKV 70
[Close]
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Match: UPI0006B7680F (U5 small nuclear ribonucleoprotein 200 kDa helicase-like n=1 Tax=Pseudopodoces humilis TaxID=181119 RepID=UPI0006B7680F)

HSP 1 Score: 125 bits (313), Expect = 2.320e-34
Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGVTEKKAIKRFQLMNEICYEKV 210
            QE VR+VGLSATLPNYEDVATFL+V+P KGLFYFDNS+RPVPL+Q Y+G+TEKKAIKRFQ+MNEI YEK+
Sbjct:  132 QEDVRLVGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKI 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166761.4182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3ACN8_9EUKA6.010e-3885.51Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
D8LHW4_ECTSI1.100e-3797.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YVZ6_NANGC1.800e-3691.43Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
W7TFU8_9STRA1.800e-3691.43U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]
A0A7S0HVE9_9EUKA1.010e-3584.06Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A3R6YI29_9STRA4.000e-3584.29Helicase ATP-binding domain-containing protein (Fr... [more]
A0A6A5AAG8_9STRA6.330e-3584.29Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7S4F5U3_CHRCT7.490e-3588.41Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4DAU8_HETAK1.390e-3487.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0006B7680F2.320e-3481.43U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166761contigH-elongata_contig166761:1003..1233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue4.8e-32
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.935009-CDS-H-elongata_contig166761:1002..12331622929974.935009-CDS-H-elongata_contig166761:1002..1233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166761 1003..1233 -
1691679230.9097824-CDS-H-elongata_contig166761:1002..12331691679230.9097824-CDS-H-elongata_contig166761:1002..1233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166761 1003..1233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166761.4182.1prot_H-elongata_contig166761.4182.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166761 1003..1233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166761.4182.1

>prot_H-elongata_contig166761.4182.1 ID=prot_H-elongata_contig166761.4182.1|Name=mRNA_H-elongata_contig166761.4182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
QELVRIVGLSATLPNYEDVATFLKVNPEKGLFYFDNSYRPVPLQQQYIGV
TEKKAIKRFQLMNEICYEKVRRLELI*
back to top

mRNA from alignment at H-elongata_contig166761:1003..1233-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166761.4182.1 ID=mRNA_H-elongata_contig166761.4182.1|Name=mRNA_H-elongata_contig166761.4182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig166761:1003..1233- (Himanthalia elongata Himel1 dioecious)
CAGGAGTTGGTGAGAATCGTCGGGCTTTCAGCCACGCTGCCGAACTACGA
AGACGTTGCCACGTTCCTGAAGGTCAACCCCGAGAAGGGCCTGTTCTACT
TCGACAACTCGTACCGCCCTGTGCCCCTCCAGCAACAGTATATTGGCGTC
ACGGAGAAGAAGGCCATCAAGCGCTTCCAGCTCATGAACGAGATCTGCTA
CGAGAAGGTGAGGCGCCTCGAGTTGATATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig166761:1003..1233-

>mRNA_H-elongata_contig166761.4182.1 ID=mRNA_H-elongata_contig166761.4182.1|Name=mRNA_H-elongata_contig166761.4182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig166761:1003..1233- (Himanthalia elongata Himel1 dioecious)
CAGGAGTTGGTGAGAATCGTCGGGCTTTCAGCCACGCTGCCGAACTACGA
AGACGTTGCCACGTTCCTGAAGGTCAACCCCGAGAAGGGCCTGTTCTACT
TCGACAACTCGTACCGCCCTGTGCCCCTCCAGCAACAGTATATTGGCGTC
ACGGAGAAGAAGGCCATCAAGCGCTTCCAGCTCATGAACGAGATCTGCTA
CGAGAAGGTGAGGCGCCTCGAGTTGATATAGCAGGAGTTGGTGAGAATCG
TCGGGCTTTCAGCCACGCTGCCGAACTACGAAGACGTTGCCACGTTCCTG
AAGGTCAACCCCGAGAAGGGCCTGTTCTACTTCGACAACTCGTACCGCCC
TGTGCCCCTCCAGCAACAGTATATTGGCGTCACGGAGAAGAAGGCCATCA
AGCGCTTCCAGCTCATGAACGAGATCTGCTACGAGAAGGTGAGGCGCCTC
GAGTTGATATAG
back to top