mRNA_H-elongata_contig166735.4181.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166735.4181.1
Unique NamemRNA_H-elongata_contig166735.4181.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: D8LJ72_ECTSI (Photosystem II 11 kDa protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ72_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.590e-36
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            +MVEFV+NYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEY+DIERAIKRQR
Sbjct:  140 EMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206
[Close]
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A836CEQ5_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ5_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.450e-30
Identity = 53/67 (79.10%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            +M++FV+ YRR  N++GKLSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRLL+EY+ IE+AIKRQR
Sbjct:  130 EMIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLLEEYNQIEKAIKRQR 196
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BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A836C8X1_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 7.980e-30
Identity = 52/67 (77.61%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            +M++FV+ YRR  N++GKLSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRL++EYS I++AIKRQR
Sbjct:  118 EMIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLMEEYSQIDKAIKRQR 184
[Close]
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A7S2UVY8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.070e-28
Identity = 51/67 (76.12%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            QMV+FVA YRR++ +NG+LSYS LYTSI+VLAGHYASYGPKFPVPEKRRKRLLQEY+DIE+ +++ R
Sbjct:  152 QMVDFVAQYRRNNKVNGRLSYSTLYTSINVLAGHYASYGPKFPVPEKRRKRLLQEYNDIEKNMRKNR 218
[Close]
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: F0YDF6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDF6_AURAN)

HSP 1 Score: 100 bits (250), Expect = 2.930e-26
Identity = 46/67 (68.66%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            +M++FVA YRR +N++GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY++IE+ IK++R
Sbjct:   36 EMIDFVAFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102
[Close]
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A6V1P1T2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P1T2_HETAK)

HSP 1 Score: 103 bits (256), Expect = 3.820e-26
Identity = 46/67 (68.66%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            QM++F++ YRR  N++GK+SYS LYTS++VLAGHYASYG KFPVPEKRRKRL QEY++IE+ +K+QR
Sbjct:  123 QMIDFISYYRRFPNVSGKMSYSTLYTSVNVLAGHYASYGTKFPVPEKRRKRLAQEYAEIEKNLKKQR 189
[Close]
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A7S3ZPN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPN6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.060e-25
Identity = 44/67 (65.67%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            +M++FV+ YRR +N++GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY+++E+ IK++R
Sbjct:   68 EMIDFVSFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLFQEYAEVEKNIKKRR 134
[Close]
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: W7TYA6_9STRA (Photosystem ii 11 kd protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYA6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.420e-23
Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            +M +FV+ YRR +N+ GK S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL QE+++I+R IKR R
Sbjct:  124 EMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
[Close]
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A7S2B2K4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2K4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.430e-23
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIK 192
            +MV+FV+ YRR SN+ GK S+S LYT+I+VLAGHY SYG KFPVPEKRRKRL QEYS+IE+ IK
Sbjct:  163 EMVDFVSFYRRFSNVAGKQSFSTLYTAINVLAGHYTSYGTKFPVPEKRRKRLYQEYSEIEKNIK 226
[Close]
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A7S3NKQ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKQ6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.400e-23
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 QMVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 201
            +M  FVA YRR + + GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY +IE+ IKR+R
Sbjct:  117 EMNAFVAFYRRFTTVTGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYDEIEKNIKRKR 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ72_ECTSI1.590e-3695.52Photosystem II 11 kDa protein n=2 Tax=Ectocarpus T... [more]
A0A836CEQ5_9STRA5.450e-3079.10Photosystem II Pbs27-domain-containing protein n=1... [more]
A0A836C8X1_9STRA7.980e-3077.61Photosystem II Pbs27-domain-containing protein n=1... [more]
A0A7S2UVY8_9STRA1.070e-2876.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YDF6_AURAN2.930e-2668.66Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6V1P1T2_HETAK3.820e-2668.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3ZPN6_9STRA2.060e-2565.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7TYA6_9STRA1.420e-2365.67Photosystem ii 11 kd protein n=2 Tax=Monodopsidace... [more]
A0A7S2B2K4_9STRA2.430e-2371.88Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3NKQ6_9STRA3.400e-2368.66Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166735contigH-elongata_contig166735:475..984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue8.1e-28
Seed eggNOG ortholog2880.D8LJ72
KEGG koko:K08902
KEGG Pathwayko00195,ko01100,map00195,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0009628,GO:0009642,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055035,GO:0071214,GO:0071478,GO:0071482,GO:0071484,GO:0071704,GO:0104004,GO:1901564
EggNOG free text desc.Photosystem II Pbs27
EggNOG OGs2CXSW@1,2RZI3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionphotosystem II 11 kDa protein
Ec32 orthologEc-02_005010.1
Exons2
Model size204
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166735.4181.1prot_H-elongata_contig166735.4181.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166735 478..984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.86651-UTR-H-elongata_contig166735:474..4771622929974.86651-UTR-H-elongata_contig166735:474..477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig166735 475..477 +
1691679230.8626845-UTR-H-elongata_contig166735:474..4771691679230.8626845-UTR-H-elongata_contig166735:474..477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig166735 475..477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.877597-CDS-H-elongata_contig166735:477..6361622929974.877597-CDS-H-elongata_contig166735:477..636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166735 478..636 +
1691679230.881725-CDS-H-elongata_contig166735:477..6361691679230.881725-CDS-H-elongata_contig166735:477..636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166735 478..636 +
1622929974.8879206-CDS-H-elongata_contig166735:942..9841622929974.8879206-CDS-H-elongata_contig166735:942..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166735 943..984 +
1691679230.8987074-CDS-H-elongata_contig166735:942..9841691679230.8987074-CDS-H-elongata_contig166735:942..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166735 943..984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166735.4181.1

>prot_H-elongata_contig166735.4181.1 ID=prot_H-elongata_contig166735.4181.1|Name=mRNA_H-elongata_contig166735.4181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKR
LLQEYSDIERAIKRQR*
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mRNA from alignment at H-elongata_contig166735:475..984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166735.4181.1 ID=mRNA_H-elongata_contig166735.4181.1|Name=mRNA_H-elongata_contig166735.4181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig166735:475..984+ (Himanthalia elongata Himel1 dioecious)
CAGATGGTCGAGTTCGTAGCGAACTACCGCCGGTCGTCCAACATCAATGG
GAAGCTATCGTACTCGAACCTCTACACGTCCATCAGCGTGCTCGCCGGGC
ATTACGCCTCGTACGGCCCCAAGTTCCCCGTGCCGGAGAAGCGCCGGAAG
CGTCTCCTACAGGTTTGTTTTGAGCGCGGGAAATATCTGCTCGTACGATG
TCGCTTAACACGCGCGTCTTTCGGCCCTCTGCTTCCTTCGAGCGCATCTC
CCGTTGTGGCCCTCTTTGTCTCCCGTGAATTCTCCACCAACTTTCGAGCC
AACGATACCCGTAACATCGATCAGTGCTTTGCTTCCTTGCTTCCTTGGAG
AGATCTTTCCACCCACCAGTGTCGAAAACTTAATGACGACATAACACGGC
TTCGCTCGATTCTCTCGACGTATTTTGTGTGCGCGCACGGCGGCTGCGGC
GGTTATCGACGACGACAGGAGTACTCCGACATCGAGCGAGCGATCAAGCG
TCAGCGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig166735:475..984+

>mRNA_H-elongata_contig166735.4181.1 ID=mRNA_H-elongata_contig166735.4181.1|Name=mRNA_H-elongata_contig166735.4181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig166735:475..984+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGAGTTCGTAGCGAACTACCGCCGGTCGTCCAACATCAATGGGAA
GCTATCGTACTCGAACCTCTACACGTCCATCAGCGTGCTCGCCGGGCATT
ACGCCTCGTACGGCCCCAAGTTCCCCGTGCCGGAGAAGCGCCGGAAGCGT
CTCCTACAGATGGTCGAGTTCGTAGCGAACTACCGCCGGTCGTCCAACAT
CAATGGGAAGCTATCGTACTCGAACCTCTACACGTCCATCAGCGTGCTCG
CCGGGCATTACGCCTCGTACGGCCCCAAGTTCCCCGTGCCGGAGAAGCGC
CGGAAGCGTCTCCTACAGGAGTACTCCGACATCGAGCGAGCGATCAAGCG
TCAGCGTTGAGAGTACTCCGACATCGAGCGAGCGATCAAGCGTCAGCGTT
GA
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