mRNA_H-elongata_contig166698.4180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig166698.4180.1
Unique Name	mRNA_H-elongata_contig166698.4180.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: A0A6H5JP05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP05_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 7.420e-53
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            RNRLEI ENP+N VPD WYKDEGGRENCVELQVHLLGP G+EVKSRRVPLRLVLMY+NMHRV NQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ
Sbjct:  156 RNRLEILENPDNPVPDQWYKDEGGRENCVELQVHLLGPSGEEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 255

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: D8LAY0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY0_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 7.830e-49
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEE 294
            RNRLEI ENP N VPD WYKDEGGRENCVELQVHLLGP G+EVKSRRVPLRLVLMY+NMHRV NQEILKLSPDSKLVIDEHGKATLRVRIEE
Sbjct:  156 RNRLEILENPGNPVPDQWYKDEGGRENCVELQVHLLGPSGEEVKSRRVPLRLVLMYDNMHRVQNQEILKLSPDSKLVIDEHGKATLRVRIEE 247

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: A0A836CR41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR41_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.320e-38
Identity = 73/105 (69.52%), Postives = 85/105 (80.95%), Query Frame = 1

Query:    4 PVPSSRNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            PV   R RL++R+NP   VP  W+KDEGGRENCVE+QVHLL   G EV +RRV LRLVL+Y+N+ RV NQEILKLSPDSK+ ID+ GKA LR+RIEEVSKNHQKQ
Sbjct:  129 PVTIVRYRLQVRDNPARPVPKEWFKDEGGRENCVEMQVHLLDKDGHEVTTRRVKLRLVLLYDNLGRVQNQEILKLSPDSKMAIDDEGKAMLRLRIEEVSKNHQKQ 233

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: A0A1W0A8H7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8H7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.630e-27
Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            R+RL I+E     +PD WYKDEGGR+ C+ L VHL+    + V +R VPLR+ L+Y+N H V  Q+ILK+SPDS+ VID+HGKA L++RIE+VSKNHQ Q
Sbjct:  125 RHRLVIQEE----LPDLWYKDEGGRDKCMLLPVHLVDQSNNPVGTRPVPLRVTLLYDNEHAVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQ 220

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: A0A1V9YPE3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPE3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.040e-26
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            R+RL I+E     +P+ WYKDEGGR+ C+ L VHL+    + V SR VPLR+ L+YEN H V  Q+ILK+SPDS+ VID+HGKA L++RIE+VSKNHQ Q
Sbjct:  126 RHRLVIQEE----LPELWYKDEGGRDKCMLLPVHLVDHNNNTVGSRPVPLRVTLLYENEHPVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQ 221

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: T0QE37_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QE37_SAPDV)

HSP 1 Score: 112 bits (280), Expect = 1.080e-26
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            R+RL I+E     +P+ WYKDEGGR+ C+ L VHL+    + V SR VPLR+ L+YEN H V  Q+ILK+SPDS+ VID+HGKA L++RIE+VSKNHQ Q
Sbjct:  127 RHRLVIQEE----LPELWYKDEGGRDKCMLLPVHLVDHNNNPVGSRPVPLRVTLLYENEHPVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQ 222

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: A0A485LTJ6_9STRA (Aste57867_25083 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTJ6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.320e-25
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            R+RL I+E+    +PD WYKDEGGR+ C+ L VHL+      V  R VPLR+ L+YEN H V  Q+ILKLSPDS+ VID +G+A L++RIE+VSKNHQ Q
Sbjct:  129 RHRLIIQED----LPDLWYKDEGGRDKCMNLPVHLVDASNQTVGHRPVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSNGQALLKLRIEDVSKNHQGQ 224

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: A0A8K1FGD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGD9_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 6.550e-25
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            ++RL I+EN    +PD WYKDEGGR+ C+ L +HL+    + V+ R+VPLR+ L+YEN H V  Q+ILK+SPD + +ID  GK+ L++RIE+VSKNHQ Q
Sbjct:  145 QHRLVIQEN----LPDLWYKDEGGRDKCMLLPIHLVNEKNERVQGRQVPLRVTLLYENEHPVLKQDILKMSPDCQRMIDTTGKSLLKLRIEDVSKNHQGQ 240

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: W4GFW1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFW1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.190e-24
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            R+RL I+E+    +P+ WYKDEGGR+ C+ L VHL+      V  R VPLR+ L+YEN H V  Q+ILKLSPDS+ VID  G A L++RIE+VSKNHQ Q
Sbjct:  135 RHRLMIQED----LPELWYKDEGGRDKCMPLPVHLVDATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSTGMALLKLRIEDVSKNHQGQ 230

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BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Match: A0A397AVR5_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AVR5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.290e-24
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query:   19 RNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVKSRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVSKNHQKQ 318
            R+RL I+E+    +P+ WYKDEGGR+ C+ L VHL+      V  R VPLR+ L+YEN H V  Q+ILKLSPDS+ VID  G A L++RIE+VSKNHQ Q
Sbjct:  812 RHRLMIQED----LPELWYKDEGGRDKCMPLPVHLVDATNQPVGHRAVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSTGMALLKLRIEDVSKNHQGQ 907

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot

BLAST of mRNA_H-elongata_contig166698.4180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JP05_9PHAE	7.420e-53	92.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LAY0_ECTSI	7.830e-49	91.30	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A836CR41_9STRA	1.320e-38	69.52	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A1W0A8H7_9STRA	7.630e-27	57.00	Uncharacterized protein n=1 Tax=Thraustotheca clav...	[more]
A0A1V9YPE3_9STRA	1.040e-26	58.00	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]
T0QE37_SAPDV	1.080e-26	58.00	Uncharacterized protein n=1 Tax=Saprolegnia diclin...	[more]
A0A485LTJ6_9STRA	1.320e-25	57.00	Aste57867_25083 protein n=1 Tax=Aphanomyces stella...	[more]
A0A8K1FGD9_PYTOL	6.550e-25	53.00	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
W4GFW1_9STRA	1.190e-24	56.00	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]
A0A397AVR5_9STRA	1.290e-24	56.00	Uncharacterized protein n=13 Tax=Aphanomyces astac...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig166698	contig	H-elongata_contig166698:366..1311 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	172.2
Seed ortholog evalue	1.3e-40
Seed eggNOG ortholog	2880.D8LAY0
EggNOG OGs	2CM82@1,2QPK2@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	2
Model size	318
Cds size	318
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929974.8172612-CDS-H-elongata_contig166698:365..479	1622929974.8172612-CDS-H-elongata_contig166698:365..479	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig166698 366..479 +
1691679230.8299239-CDS-H-elongata_contig166698:365..479	1691679230.8299239-CDS-H-elongata_contig166698:365..479	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig166698 366..479 +
1622929974.8298576-CDS-H-elongata_contig166698:1107..1311	1622929974.8298576-CDS-H-elongata_contig166698:1107..1311	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig166698 1108..1311 +
1691679230.844344-CDS-H-elongata_contig166698:1107..1311	1691679230.844344-CDS-H-elongata_contig166698:1107..1311	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig166698 1108..1311 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig166698.4180.1	prot_H-elongata_contig166698.4180.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig166698 366..1311 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig166698:366..1311+
coding sequence from alignment at H-elongata_contig166698:366..1311+

protein sequence of mRNA_H-elongata_contig166698.4180.1

>prot_H-elongata_contig166698.4180.1 ID=prot_H-elongata_contig166698.4180.1|Name=mRNA_H-elongata_contig166698.4180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
SPVPSSRNRLEIRENPENLVPDHWYKDEGGRENCVELQVHLLGPLGDEVK
SRRVPLRLVLMYENMHRVHNQEILKLSPDSKLVIDEHGKATLRVRIEEVS
KNHQKQ

mRNA from alignment at H-elongata_contig166698:366..1311+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig166698.4180.1 ID=mRNA_H-elongata_contig166698.4180.1|Name=mRNA_H-elongata_contig166698.4180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=946bp|location=Sequence derived from alignment at H-elongata_contig166698:366..1311+ (Himanthalia elongata Himel1 dioecious)
TCCCCCGTTCCGAGCAGCCGAAACCGCTTAGAAATCCGCGAGAACCCGGA
AAACCTGGTGCCCGACCATTGGTACAAGGACGAGGGAGGCCGGGAAAATT
GCGTGGAGTTGCAGGTGCGCAAGCGTGCGTTCGTTCATTTATCCATGCAC
GCCTACATTTTTCTCGGAACCCTTGTGTGTCACAGGCACACAGCTGTGAG
ACGACCCGCTCGTGTGATGTTTTACGACAGGGGAATTCTAGACGTTTTTC
TTTTTCATTAGGTTGGTGGGCGTGGGGAAGGGAAAAAAAGCACTTGAAAT
GTTAGTCGCTCAAAAAAAATGTTACTAATAATATAGTACTACTACTACGT
ATTAATTATTATGTATTTACAGGATAAAGAGAGATGACTTGTACTGGACA
AATTCGGTGCGGTTTTTTTTTGGTCGAGGGTGAAGTGTGCACTTGTGTTT
AACGCATGTCATATCCTTTGGGAGAAAGGTCACGTCTCCATATCTTTAAC
GCCGAGACCGAGCGGTATGCCAGGTTTTAGCTGACCAGACTGCGTTTTAC
GAGGATGATGCCATCTTTTAGTCTTCAACTTTGATTTTGTTTCGCCAAAA
CACAACAAATGTCATCAGTTCGCACGATTAAATTCCTCCAATGGGAAGTA
TTGAACCACAAAAAGGGAAGTAGGCGGTGGGAATGGGGGGGCGGGGCAAT
TATGAGATTCGAACGCCTTCTCTACGCGCCCACCTTTAATAGGTACATCT
CCTGGGGCCTCTGGGGGATGAAGTGAAGAGCCGGCGCGTGCCCCTAAGGC
TGGTCCTCATGTACGAAAACATGCACAGGGTGCACAATCAGGAGATCTTG
AAGCTATCTCCGGACAGCAAGCTGGTGATCGACGAGCACGGCAAGGCCAC
GCTGCGCGTGCGAATCGAAGAAGTCTCCAAGAATCACCAGAAGCAG

Coding sequence (CDS) from alignment at H-elongata_contig166698:366..1311+

>mRNA_H-elongata_contig166698.4180.1 ID=mRNA_H-elongata_contig166698.4180.1|Name=mRNA_H-elongata_contig166698.4180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig166698:366..1311+ (Himanthalia elongata Himel1 dioecious)
TCCCCCGTTCCGAGCAGCCGAAACCGCTTAGAAATCCGCGAGAACCCGGA
AAACCTGGTGCCCGACCATTGGTACAAGGACGAGGGAGGCCGGGAAAATT
GCGTGGAGTTGCAGTCCCCCGTTCCGAGCAGCCGAAACCGCTTAGAAATC
CGCGAGAACCCGGAAAACCTGGTGCCCGACCATTGGTACAAGGACGAGGG
AGGCCGGGAAAATTGCGTGGAGTTGCAGGTACATCTCCTGGGGCCTCTGG
GGGATGAAGTGAAGAGCCGGCGCGTGCCCCTAAGGCTGGTCCTCATGTAC
GAAAACATGCACAGGGTGCACAATCAGGAGATCTTGAAGCTATCTCCGGA
CAGCAAGCTGGTGATCGACGAGCACGGCAAGGCCACGCTGCGCGTGCGAA
TCGAAGAAGTCTCCAAGAATCACCAGAAGCAGGTACATCTCCTGGGGCCT
CTGGGGGATGAAGTGAAGAGCCGGCGCGTGCCCCTAAGGCTGGTCCTCAT
GTACGAAAACATGCACAGGGTGCACAATCAGGAGATCTTGAAGCTATCTC
CGGACAGCAAGCTGGTGATCGACGAGCACGGCAAGGCCACGCTGCGCGTG
CGAATCGAAGAAGTCTCCAAGAATCACCAGAAGCAG