mRNA_H-elongata_contig16667.4179.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16667.4179.1
Unique NamemRNA_H-elongata_contig16667.4179.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16667.4179.1 vs. uniprot
Match: A0A6H5JC06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC06_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.650e-31
Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:    1 EKLNVTSILAPDVKTGSSVFWIKKVNPQLPPLHVTAGSSALELSENWCGAHGLGPSQVPIVAWKLLEAYPAQMEVTRNSTELSQARIALGYAACQKEVLVVVFLVGCGFAL-RKWWTWK 354
            ++L ++S+LAPDV+TG+S+FW+K V+P LP  +VTAGSSALE+SE +C  H LGPSQV   AWKLL+AYP QME  R    L  AR+ L +AACQ+EV  V  +     A  R+WW +K
Sbjct:  320 KRLTLSSVLAPDVETGTSIFWVK-VDPSLPEAYVTAGSSALEISERFCRTHNLGPSQV---AWKLLDAYPVQMEAARRDGTLLPARVTLRHAACQREVAFVSIVAVLWVARKRRWWLFK 434
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BLAST of mRNA_H-elongata_contig16667.4179.1 vs. uniprot
Match: D7G977_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G977_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.320e-13
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:    1 EKLNVTSILAPDVKTGSSVFWIKKVNPQLPPLHVTAGSSALELSENWCGAHGLGPSQVPIVAWKLLEAYPAQMEVTRNSTELSQARIALGYAACQKEVLVVVFLVGCGFAL-RKWWTWK 354
            E+L ++S+LAPDV+ G+S+FW+K                                     VAWKLL+AYPAQME  R    L  AR+ L +AACQ+EV  V+ +     A  R+WW +K
Sbjct:  374 ERLTLSSVLAPDVEKGTSIFWVK-------------------------------------VAWKLLDAYPAQMEAARRDGTLLPARVTLRHAACQREVAFVLIVAVLWVARSRRWWLFK 455
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16667.4179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC06_9PHAE2.650e-3153.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G977_ECTSI2.320e-1336.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16667contigH-elongata_contig16667:822..1608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16667.4179.1prot_H-elongata_contig16667.4179.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16667 822..1608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.7525327-CDS-H-elongata_contig16667:821..8901622929974.7525327-CDS-H-elongata_contig16667:821..890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16667 822..890 +
1691679230.802847-CDS-H-elongata_contig16667:821..8901691679230.802847-CDS-H-elongata_contig16667:821..890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16667 822..890 +
1622929974.7684777-CDS-H-elongata_contig16667:1129..12401622929974.7684777-CDS-H-elongata_contig16667:1129..1240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16667 1130..1240 +
1691679230.8108518-CDS-H-elongata_contig16667:1129..12401691679230.8108518-CDS-H-elongata_contig16667:1129..1240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16667 1130..1240 +
1622929974.7803433-CDS-H-elongata_contig16667:1434..16081622929974.7803433-CDS-H-elongata_contig16667:1434..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16667 1435..1608 +
1691679230.8196666-CDS-H-elongata_contig16667:1434..16081691679230.8196666-CDS-H-elongata_contig16667:1434..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16667 1435..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16667.4179.1

>prot_H-elongata_contig16667.4179.1 ID=prot_H-elongata_contig16667.4179.1|Name=mRNA_H-elongata_contig16667.4179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
EKLNVTSILAPDVKTGSSVFWIKKVNPQLPPLHVTAGSSALELSENWCGA
HGLGPSQVPIVAWKLLEAYPAQMEVTRNSTELSQARIALGYAACQKEVLV
VVFLVGCGFALRKWWTWK
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mRNA from alignment at H-elongata_contig16667:822..1608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16667.4179.1 ID=mRNA_H-elongata_contig16667.4179.1|Name=mRNA_H-elongata_contig16667.4179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=787bp|location=Sequence derived from alignment at H-elongata_contig16667:822..1608+ (Himanthalia elongata Himel1 dioecious)
GAGAAATTAAACGTAACTTCTATTCTAGCTCCGGACGTCAAAACTGGCTC
AAGCGTGTTCTGGATCAAGGTGTGCGTTTGTGATCAGAAGGATAGGAGCT
CCCGAGGGAGATCTTTTTCGTGCCGTGATTCCACGGTGGCAGCGGTAGAT
TGATGCAATTGGACATTCATAACCACAAGAAGTACCGCGTGAAAGATATG
TCTCCCGTAGCCGCCGCGCATTGAGTACTGTTATCGGATCATCTTAACAA
CCAAAACTCCCCGCTCGTTTAGCAGCTTCCTCGATGCCTCACGTCGCATT
ATTCCGAGAAGGTTAATCCCCAGCTACCACCACTGCACGTCACGGCTGGG
AGCTCCGCTTTGGAACTTTCTGAGAATTGGTGCGGGGCGCACGGTCTTGG
GCCATCTCAGGTCCCTATCGTGAGTAAGGGAATAAAGGGATAATGTCGTG
GCTGTCCTTTGCCGCTTTTCATGCTCCATCTTGCATAGAGCGCCGTGTCA
TACCCTTGCGAGTATGGCGATATACCATGTACCATTATTTCTTCCCTCTC
GACTATCGGTACCAAAACAATATATTAAACCATACAAATATAAATGTCTT
TACACCGCCGTAGGTTGCTTGGAAACTGCTCGAGGCCTACCCCGCACAAA
TGGAAGTCACCCGAAACAGCACCGAGCTATCACAGGCGAGGATCGCGCTC
GGCTATGCCGCCTGTCAGAAAGAAGTGCTGGTCGTCGTTTTTCTTGTCGG
ATGCGGTTTTGCCTTGAGAAAATGGTGGACCTGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig16667:822..1608+

>mRNA_H-elongata_contig16667.4179.1 ID=mRNA_H-elongata_contig16667.4179.1|Name=mRNA_H-elongata_contig16667.4179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig16667:822..1608+ (Himanthalia elongata Himel1 dioecious)
GAGAAATTAAACGTAACTTCTATTCTAGCTCCGGACGTCAAAACTGGCTC
AAGCGTGTTCTGGATCAAGGAGAAATTAAACGTAACTTCTATTCTAGCTC
CGGACGTCAAAACTGGCTCAAGCGTGTTCTGGATCAAGAAGGTTAATCCC
CAGCTACCACCACTGCACGTCACGGCTGGGAGCTCCGCTTTGGAACTTTC
TGAGAATTGGTGCGGGGCGCACGGTCTTGGGCCATCTCAGGTCCCTATCA
AGGTTAATCCCCAGCTACCACCACTGCACGTCACGGCTGGGAGCTCCGCT
TTGGAACTTTCTGAGAATTGGTGCGGGGCGCACGGTCTTGGGCCATCTCA
GGTCCCTATCGTTGCTTGGAAACTGCTCGAGGCCTACCCCGCACAAATGG
AAGTCACCCGAAACAGCACCGAGCTATCACAGGCGAGGATCGCGCTCGGC
TATGCCGCCTGTCAGAAAGAAGTGCTGGTCGTCGTTTTTCTTGTCGGATG
CGGTTTTGCCTTGAGAAAATGGTGGACCTGGAAGGTTGCTTGGAAACTGC
TCGAGGCCTACCCCGCACAAATGGAAGTCACCCGAAACAGCACCGAGCTA
TCACAGGCGAGGATCGCGCTCGGCTATGCCGCCTGTCAGAAAGAAGTGCT
GGTCGTCGTTTTTCTTGTCGGATGCGGTTTTGCCTTGAGAAAATGGTGGA
CCTGGAAG
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