mRNA_H-elongata_contig16639.4171.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16639.4171.1
Unique NamemRNA_H-elongata_contig16639.4171.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: D8LCA4_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA4_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 3.280e-161
Identity = 221/328 (67.38%), Postives = 276/328 (84.15%), Query Frame = 2 
Query:  488 EFTDISEGRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDWLDLAATYNAIPGKMETDSELRKRWGEELANGTSPMRTEAGIDRRVQAELKKRESATPEGVDHRNKKIYDVKSAEARKILAKQKVQGYTPSFGYIEKVNYLDLYIPVPAGTRAKDVTCEIHPDRLMVKVEDMGIVAEGYFEERVALDGCYWLMTNLSLDYP-STVVSAKGEDVRQGPRDKGETCVQVFLEKRKPYDTLWQNIFRPK*DG 1468
            EF D+S GR +CLKRVD  G E DGNP KGSK+KV Y M++  G  I+SSG + +KPFEF LG+WPS+   GWDKA+S MH+GE+ TL+CGPQYAFGAAGAPP+IPPNATVET LEL DWLDLAA YNA+PGK+ETD ELR+RW E+LA+GTSPM+ EAG+++++QAE+  + SATPE  DHR KKIYD++S EAR+I+AKQKVQGYTP FGY+E+ NYLDLYIPVPAGTRAKDVT EIHPDR++V V+  G+V +G+F+ +VALDGC+WLM++LSLD P ST +  + ++VRQGP  +GETCVQVFLEKRKP+DTLW+N++RP+ DG
Sbjct:  215 EFADLSGGRGSCLKRVDEDGFETDGNPPKGSKIKVHYKMKVVDGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEDWLDLAAEYNAVPGKVETDEELRERWSEDLADGTSPMKDEAGLNKKLQAEMSAKASATPENTDHRGKKIYDLESKEAREIMAKQKVQGYTPDFGYVERANYLDLYIPVPAGTRAKDVTVEIHPDRMLVVVKGTGVVTQGHFQGKVALDGCHWLMSDLSLDPPGSTALGTQDDEVRQGPVYRGETCVQVFLEKRKPFDTLWENVYRPREDG 542
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: A0A835YYM1_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM1_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.130e-43
Identity = 105/293 (35.84%), Postives = 148/293 (50.51%), Query Frame = 2 
Query:  701 GWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDWLDLAATYNAIPGKMETDSELRKRWGEELANGTSPMRTEAGIDRRVQAELKKRESATPEGVDHRNKKIYDVKSAEARKILAKQKVQGYTPSFGYIEKVNYLDLYIPVPAGTRAK--------------------------------------DVTCEIHPDRLMVKVEDMG-----IVAEGYFEERVALDGCYWLMTNLSLDYPSTVVSAKGEDVRQGPRDKGETCVQVFLEKRKPYDTLWQNIF 1450
            GWD AV TM KGE  +++C PQYA+G AGAPPKIPP A++E  LELLDW D+AA Y+      ET  E  +RW +E+ +GTSP++ + G    ++       + T + V     K+ DV   + R+  A+Q V G    + Y+EK  +LDLY+ VP GTRA                                       DV C+I P RL +++          + EG    RVALDG YW+M+ ++ +    + S    DV  G   +G   VQV+LEK  P DT+W ++F
Sbjct:    3 GWDVAVQTMEKGERASIICSPQYAYGEAGAPPKIPPGASLECELELLDWEDVAARYSEYARPGETHEERMERWEQEIESGTSPIKEDVGPQPGIR-------TVTADEVT--KGKMVDVNDPQVRRAAARQLVCGQGEGYTYLEKGAFLDLYVTVPEGTRAXXXXXXXXXXXXXXXXXAANEXXXXXXXXXXXXXXXXXADVLCDIAPRRLSLRITAQPDAPPLTILEGTLHGRVALDGSYWVMSEVAPEAYDELRS----DVGFGLTARG-AFVQVYLEKLPPDDTIWPDVF 281
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: A0A2A4IZY8_HELVI (Peptidylprolyl isomerase n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4IZY8_HELVI)

HSP 1 Score: 103 bits (257), Expect = 1.250e-21
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:  476 LNLEEFTDISE-GRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDW 847
            + ++E  DI++ G +  LKR+   G+  D  P  G +V V YT  L  G +  SS  + ++PFEF LGK    VI  WD  V+TM KGE+  L C P YA+G AG+PPKIPPNAT++  +E++DW
Sbjct:    1 MTVDEGVDITKTGDRGVLKRIIKEGTGTD-TPNPGCQVTVHYTGTLLDGTKFDSSR-DRNEPFEFNLGK--GSVIKAWDIGVATMKKGEVCVLTCAPLYAYGNAGSPPKIPPNATLQFEIEMIDW 121
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: UPI0010407870 (FK506-binding protein 59 isoform X1 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI0010407870)

HSP 1 Score: 108 bits (270), Expect = 2.950e-21
Identity = 58/125 (46.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  476 LNLEEFTDISE-GRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDW 847
            + ++E  DIS+ G +  LKR+   G   D  P  G +V V YT  L  G++  SS  + ++PFEF LGK    VI  WD  V+TM KGE+  L C P+YA+GAAG+PPKIPPNAT++  +E++DW
Sbjct:    1 MTVDEGVDISKNGDRGVLKRIIKEGEGTD-TPNVGCQVTVHYTGTLLDGSKFDSSR-DRNEPFEFNLGK--GSVIKAWDVGVATMKKGEVCVLTCAPEYAYGAAGSPPKIPPNATLQFEIEMIDW 121
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: A0A0L7KRI6_9NEOP (Peptidylprolyl isomerase (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KRI6_9NEOP)

HSP 1 Score: 100 bits (249), Expect = 3.060e-21
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 2 
Query:  476 LNLEEFTDISEGRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDWL--DLAATYN 871
            + +++  DIS G +  LKR+   G   D  P  G +V V YT  L  G++  SS  + ++PFEF LGK        WD  V+TM KGE+  L C P+YA+GAAG+PPKIPPN+ ++  +E++DW   DL+ + N
Sbjct:    1 MTVDQGVDIS-GDRGVLKRIIQEGEGSD-TPNPGCQVTVHYTGTLVDGSKFDSSK-DRNEPFEFQLGK-------AWDVGVATMKKGEVCVLTCAPEYAYGAAGSPPKIPPNSILQFEIEMIDWKVEDLSPSKN 124
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: H9JVS1_BOMMO (Peptidylprolyl isomerase n=1 Tax=Bombyx mori TaxID=7091 RepID=H9JVS1_BOMMO)

HSP 1 Score: 100 bits (249), Expect = 5.820e-21
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 2 
Query:  476 LNLEEFTDISE-GRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDWL--DLAATYN 871
            + +++  DI++ G +  LKR+   G   +  P +G  V V Y   L  G +  SS  + ++PFEF LGK    VI  W   V TM KGE+  L C P+YA+GA+G+PPKIPPNAT++  +E++DW   DL+ T N
Sbjct:    1 MTVDQGVDITKNGDRGVLKRITREGEGTE-TPNQGCHVSVHYVGTLLDGTKFDSSR-DRNEPFEFCLGK--DGVIEAWKIGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDWRLEDLSPTKN 131
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: A0A0N1IEI0_PAPMA (Peptidylprolyl isomerase n=7 Tax=Papilio TaxID=7145 RepID=A0A0N1IEI0_PAPMA)

HSP 1 Score: 107 bits (266), Expect = 9.430e-21
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:  476 LNLEEFTDISE-GRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDW 847
            + ++E  DIS+ G +  LKR+   G   D  P  G +V V YT  L  G +  SS  + ++PFEF LGK   +VI  WD  V+TM KGE+  L C P+YA+GAAG+PPKIPPN+T++  +E++DW
Sbjct:    1 MTVDEGIDISKAGDRGVLKRIIKEGEGTD-TPNPGCQVTVHYTGTLLDGTKFDSSK-DRNEPFEFQLGK--GEVIKAWDIGVATMKKGEVCVLTCAPEYAYGAAGSPPKIPPNSTLQFEVEMIDW 121
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: UPI00200E11E9 (FK506-binding protein 59 isoform X1 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200E11E9)

HSP 1 Score: 107 bits (266), Expect = 9.430e-21
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 2 
Query:  476 LNLEEFTDISE-GRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDWL--DLAATYN 871
            + ++E  DIS+ G +  LKR+   G   D   A G +V V YT  L  G +  SS  + ++PFEF LGK   QVI  WD  V+TM KGE+  L C P+YA+GAAG+PPKIPPN+T++  +E++DW   DL+ + N
Sbjct:    1 MTVDEGVDISKAGDRGVLKRIIQEGQGTDTANA-GCQVTVHYTGTLLDGTKFDSSK-DRNEPFEFQLGK--GQVIKAWDIGVATMKKGEVCVLTCAPEYAYGAAGSPPKIPPNSTLQFEIEMIDWKVEDLSPSKN 131
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: A0A6V4G211_9EUKA (Peptidylprolyl isomerase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6V4G211_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 9.740e-21
Identity = 56/126 (44.44%), Postives = 71/126 (56.35%), Query Frame = 2 
Query:  476 LNLEEFTDISEGRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKP--FEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDW 847
            L+L +  D   G   C K +   G    G P  GSKVKV Y   L  G++  SS     +P  FEF +G+   QVI GWD  V+TMHKGE+  L C   YA+GA+G PP IPPNAT++  +EL  W
Sbjct:   50 LDLADKGDDISGEGGCFKSIQKEGKSAGGTPPPGSKVKVHYVGTLLDGSKFDSSR---DRPGFFEFTIGQ--QQVIKGWDVGVATMHKGEVAVLTCRADYAYGASGHPPTIPPNATLKFEVELFGW 170
[Close]
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Match: A0A3S2LDD8_CHISP (Peptidylprolyl isomerase n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2LDD8_CHISP)

HSP 1 Score: 106 bits (265), Expect = 1.260e-20
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 2 
Query:  476 LNLEEFTDISE-GRKTCLKRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLGKWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVETTLELLDW 847
            + ++E  DIS+ G +  LKR+   G   D  P  G  V V YT  L  G +  SS  + ++PFEF LGK    VI  WD  V+TM KGE+  L C P+YA+G AG+PPKIPPNAT++  +E++DW
Sbjct:    1 MTVDEGVDISKTGDRGVLKRIIKEGEGTD-TPNTGCHVSVHYTGTLLDGTKFDSSR-DRNEPFEFSLGK--GSVIKAWDVGVATMKKGEVCVLTCAPEYAYGPAGSPPKIPPNATLQFEIEMIDW 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16639.4171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCA4_ECTSI3.280e-16167.38Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YYM1_9STRA1.130e-4335.84Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A2A4IZY8_HELVI1.250e-2144.80Peptidylprolyl isomerase n=1 Tax=Heliothis viresce... [more]
UPI00104078702.950e-2146.40FK506-binding protein 59 isoform X1 n=2 Tax=Ostrin... [more]
A0A0L7KRI6_9NEOP3.060e-2141.79Peptidylprolyl isomerase (Fragment) n=1 Tax=Operop... [more]
H9JVS1_BOMMO5.820e-2141.48Peptidylprolyl isomerase n=1 Tax=Bombyx mori TaxID... [more]
A0A0N1IEI0_PAPMA9.430e-2145.60Peptidylprolyl isomerase n=7 Tax=Papilio TaxID=714... [more]
UPI00200E11E99.430e-2145.19FK506-binding protein 59 isoform X1 n=2 Tax=Legumi... [more]
A0A6V4G211_9EUKA9.740e-2144.44Peptidylprolyl isomerase n=1 Tax=Prymnesium polyle... [more]
A0A3S2LDD8_CHISP1.260e-2045.60Peptidylprolyl isomerase n=1 Tax=Chilo suppressali... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16639contigH-elongata_contig16639:246..7248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score485.3
Seed ortholog evalue3.1e-134
Seed eggNOG ortholog2880.D8LCA4
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-14_005490.1
Exons6
Model size2209
Cds size1386
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16639.4171.1prot_H-elongata_contig16639.4171.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16639 322..6501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.067588-UTR-H-elongata_contig16639:245..3211622929974.067588-UTR-H-elongata_contig16639:245..321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16639 246..321 +
1691679230.4842873-UTR-H-elongata_contig16639:245..3211691679230.4842873-UTR-H-elongata_contig16639:245..321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16639 246..321 +
1622929974.1568036-UTR-H-elongata_contig16639:6501..72481622929974.1568036-UTR-H-elongata_contig16639:6501..7248Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16639 6502..7248 +
1691679230.5766895-UTR-H-elongata_contig16639:6501..72481691679230.5766895-UTR-H-elongata_contig16639:6501..7248Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16639 6502..7248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.0842607-CDS-H-elongata_contig16639:321..5361622929974.0842607-CDS-H-elongata_contig16639:321..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 322..536 +
1691679230.4969985-CDS-H-elongata_contig16639:321..5361691679230.4969985-CDS-H-elongata_contig16639:321..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 322..536 +
1622929974.0991726-CDS-H-elongata_contig16639:842..11341622929974.0991726-CDS-H-elongata_contig16639:842..1134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 843..1134 +
1691679230.5075932-CDS-H-elongata_contig16639:842..11341691679230.5075932-CDS-H-elongata_contig16639:842..1134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 843..1134 +
1622929974.109852-CDS-H-elongata_contig16639:1465..15551622929974.109852-CDS-H-elongata_contig16639:1465..1555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 1466..1555 +
1691679230.52456-CDS-H-elongata_contig16639:1465..15551691679230.52456-CDS-H-elongata_contig16639:1465..1555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 1466..1555 +
1622929974.1203778-CDS-H-elongata_contig16639:2145..24371622929974.1203778-CDS-H-elongata_contig16639:2145..2437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 2146..2437 +
1691679230.535963-CDS-H-elongata_contig16639:2145..24371691679230.535963-CDS-H-elongata_contig16639:2145..2437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 2146..2437 +
1622929974.1306598-CDS-H-elongata_contig16639:5770..59761622929974.1306598-CDS-H-elongata_contig16639:5770..5976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 5771..5976 +
1691679230.546644-CDS-H-elongata_contig16639:5770..59761691679230.546644-CDS-H-elongata_contig16639:5770..5976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 5771..5976 +
1622929974.143838-CDS-H-elongata_contig16639:6210..65011622929974.143838-CDS-H-elongata_contig16639:6210..6501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 6211..6501 +
1691679230.5648947-CDS-H-elongata_contig16639:6210..65011691679230.5648947-CDS-H-elongata_contig16639:6210..6501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16639 6211..6501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16639.4171.1

>prot_H-elongata_contig16639.4171.1 ID=prot_H-elongata_contig16639.4171.1|Name=mRNA_H-elongata_contig16639.4171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=462bp
MIGIGRVRELRHCRWHHDFVSIASKSFSVWLMVSLARWSSGFVLVGCPTP
SSSQSKASSRWTHSVKQLPLIKLACHRRASHPLRCIEKSHTKPSTGSSFQ
FERGVNFVWRGRRFSHVRLLAKAVERNEDPLERLNLEEFTDISEGRKTCL
KRVDHPGSEIDGNPAKGSKVKVRYTMRLFGGNEISSSGGEGSKPFEFFLG
KWPSQVIFGWDKAVSTMHKGEIVTLVCGPQYAFGAAGAPPKIPPNATVET
TLELLDWLDLAATYNAIPGKMETDSELRKRWGEELANGTSPMRTEAGIDR
RVQAELKKRESATPEGVDHRNKKIYDVKSAEARKILAKQKVQGYTPSFGY
IEKVNYLDLYIPVPAGTRAKDVTCEIHPDRLMVKVEDMGIVAEGYFEERV
ALDGCYWLMTNLSLDYPSTVVSAKGEDVRQGPRDKGETCVQVFLEKRKPY
DTLWQNIFRPK*
back to top

mRNA from alignment at H-elongata_contig16639:246..7248+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16639.4171.1 ID=mRNA_H-elongata_contig16639.4171.1|Name=mRNA_H-elongata_contig16639.4171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7003bp|location=Sequence derived from alignment at H-elongata_contig16639:246..7248+ (Himanthalia elongata Himel1 dioecious)
GTGACCAGCCGGCGTGCCACCGTTAGAACGGTTTGAACCCTCTTAAGCAA
GTTATTTGACGTGTCAGGCCTAGGATATGATAGGAATTGGACGTGTGCGT
GAGCTACGGCATTGTAGATGGCACCATGACTTCGTGTCAATCGCATCGAA
GTCGTTTAGCGTGTGGTTGATGGTATCTCTGGCCCGATGGTCAAGCGGCT
TTGTACTTGTCGGGTGTCCGACCCCTTCTTCTTCGCAGTCCAAGGCCTCT
TCGAGGTGGACGCATTCTGTGAAGCAGCTTCCGCTAATCAAGTGAGAATC
ACACGGGACTAAATTATATTTGTTATATGGTGATGTAGCAGGAGCGAGCG
ATAATTCCTAAGCCAATGTTCGCCTGCTGGACTTTACTGAGTTTACTTGA
AAAAAACTTTCATACGACTGTCAAATTAACAGTCTCTCTGTAATTCAATG
TCTTTATTATATAGGGTCATAGTCTTGCACCGCTGTTCTCGTTTAACTTC
CAGTCCTCTACCTGTATCACACAGGATTCATTTTTGAAGCACAAGAGTCA
AGAGTTCGCTGCCTATTTCGACCTGCCCCTTTCCACCTTCGTTTCAGGCT
TGCATGCCATCGACGAGCCTCGCACCCACTACGATGTATTGAAAAATCAC
ACACAAAGCCGTCCACTGGCAGCTCGTTTCAATTCGAAAGAGGAGTAAAT
TTCGTATGGAGGGGGAGAAGGTTCTCTCATGTGCGGCTGTTGGCGAAGGC
GGTGGAGAGAAATGAGGATCCCCTGGAACGTTTGAACTTGGAAGAGTTCA
CTGATATATCGGAAGGGCGAAAAACATGCTTGAAGCGGGTAGACCACCCC
GGCTCTGAAATAGACGGGAACCCAGCGAAGGGATCAAAGGTGGGCTGCTC
TGCTTTTTTTCTGTGCCTTTGATGAGTTACGATGTGGGTTACATGCTGTA
AATACTTGTGCAGCAACAGTTTCGCGGCGGAATCAAGCATATAGCGGCAT
GTGACGCCCATGATATTTGGAAACTTAATCTACAGTATCCAGCCGTAATT
TACCCCCTTGACCCTGCTACCGCTGGAACACAAGAAAACTAGGCTCCCAT
CTCCGTTTGACGGGAACGAAATGTCTTGACATGGTACCGCCCGCCCCAGC
GGTCATCCTCATCGTACAGTACGGCACTGCTGCATCTACCCCTGTCGTTT
ATAAACCGGACTTCCTGCAGGTGAAAGTGCGCTACACCATGAGGCTTTTT
GGTGGGAACGAGATCTCTTCCAGTGGAGGCGAGGGCAGCAAACCTTTTGA
GTTCTTCCTGGTGAGTAGCTTATGAGTGATGTGCTACGCTGATAATTGTA
CCGTAGCATTCTAGAACGCCTCCCCCTCGGAAACCCTGCAATACCTAGGA
CGTAGGGTGCCAGTATTGGCGCGAAAAGACGCGTTATCGAGGAGATATTT
CTACCGGTTCTTGCTTAGGTTTTATGTGACTGGTCTTGCCGCAGTAGTGG
GTAAGTTTGTCCCCGGAGAGGAAGCGTTCTTGTTGAACGCTATATATACG
GTAACCCACAGCGCGAGCCGGATGACGCTGGTGGGGGGCAATACAATGCC
ACTAGTCTCATCCGTCTGTCTAGCGGGTCCTGTCTGGGACGTATACCGTC
AGAGCTGTGAGTACAAGAGTAGAAGCGGATGTATTTATTTAAAAACAAGT
GAACTCATTCAAACCCTCCGAACATCCACCACACCTCACCATGCTATCAA
ACCTGCAATAGGAACCTTAGTTTGTCTAGCCACCCCCGAAATATCGCTTG
ACTCCTTACCCATGGGGTTGCTCGTTCGTGGCCTGTATCCAGGATTCCAG
TGTTTCAGTGTACTCGACCTGCCTGTCCCTTTCCTCCCCCGCTGCCTCAG
GGCAAGTGGCCAAGCCAGGTCATTTTCGGATGGGATAAAGCCGTGTCGAC
GATGCACAAAGGCGAGATAGTCACCCTCGTCTGTGGGCCACAGTACGCGT
TCGGCGCGGCCGGTGCACCACCCAAGATTCCCCCTAACGCCACGGTAGAG
ACTACGCTCGAGCTCCTTGACTGGCTCGATCTCGCCGCGACGTACAACGC
CATTCCGGGCAAGATGGAGACAGACTCCGAGCTGAGGAAGAGATGGGGCG
AGGAGTTGGCTAACGGCACCAGCCCTATGCGCACAGAAGCAGGTGGGCCA
TCTGTACAGGACAGGACTTCTGAGTGATGTATTTATCTCATGGAAAGGCA
CGGAAGTGCCACGAGTTTTTTTTAATAGACATATCCGCAGAATAAAACCC
GCCATGATACATGACTGTCTATTTGGGGGGAGCGGGAGTGTCACGAGTTT
GTTTTTTTACATGCACCCGCTCGAAACAGAGATTCGATGCCCGCCAAAAC
CAATTGGCGTGTCCTACTCATTCCAAAGCGCCAACCGTGAAAGGGGCAAG
CACGTCTGGATTATATCCTGACAAAGCAGGCGGACCGCAGATTGTTCCGC
TCAGTTAATGTTCGCCCGCCGCCTTTAGAGGCACCATAATCGGATCATAA
TCTCGTGTACGCGAAAGTCCGCATCCCGCGGAGGTCTGCACCAAACCGGA
AGAAGAGGGAGAGCACCAAGGAAACTCCGAGGACAGCCGACCTCCAGCGG
TTGATGACTGACCCGGACCTTCGACACCAGGTTGCGAACGTGATGTGTAC
CGCATTACCACCCATCCCCGGTGGCACCTGCATCGATAACATCGCCGACG
ACATAGCTGACGTTATGCTTTCCACTGCGGCTGAACTGGCACCGTGTTTT
AAGCGCCCGCGCGGAGCACATAGTTGGTGCGCGGGTCCTAGTGTGGAGAT
TGAGATGAACGCCGCATGAAAACATAGAGAGGAAGCGAGGAAGCGCCTAC
GTACAGAACCCCATAATTTCAACTTTCGAAAGGCCGTGAAGGTGGCTGGC
AAGAATATTCGGAAGGTTCGCGAGGCTGCCGTGCTGAGCTTTTTCTGGAC
ATTCGTCTGCAAGCTCCAAACTCGTTCGTGAAGGCAATCAGGCCGGCGCC
TACAGGCACCTGAAGACGATGAACTTGAAAGGGAAGCGAGACCACAGCTT
GGCGTACATAAAATACGAGGACGGTATACTCCTGACGGACGTTGTACTTA
TCCGCGAATGATGAGCCTGGTGGTTCCACACTCTCCTCAACACCAAATCG
CCGGAGCTCGAGCCGAACATTACCGAACGTCTTGACCAGTGGCCGGAGAA
CACCCCGCTAGGAGTTCAGCCAACGATGCAGGAGCTGACAGACGCCATCC
GCTCGTTAGCGAACGGGGAGGCTGTTGGACCTGACAGAGTTTCCACTGAG
CTGTTCAAGGTCGCCCTCACCGGCGATGCCACCCTGCGACGGAGACTGCT
CAATATCGTCGTTTGCATTTAGAGGTGGGAGGAAGGTGCCCCAGCAGTGG
AAATATGCCACCATCAAGGTACTCCACAAGAAGGATCGGACAGAAAGCGG
CAACTACAGAGTTATCTTGCTGGTAGCTCACGCCGGCAATATACTCTGAA
GATCATCGCTCGCCGCCTGAGTGAGTACTGCGAGCGCGTTGATATCCTAC
CGGAGGAACAAAATGGTTTCCGGCCGAACCGTTCTACCACCGATATGATG
TTCGTCATTCGTCGACTACAGGAGCTGGCGCGGAATAAACGGATTCCGTT
GTATGTATGCTTTATCGAACTTAAATAATCGTACGACTCTGTTGACCGAA
CCCTCCTCTGGGCAGTACTCGCCCGTTTTGGCGTGCCACAAAAGATGATC
TCGGTCATTCTTCAATTCCATGATGGCATGCGAACATTTGTGAGGCTCGA
TGACGGGGTTTGCTTGGGGTTGTTCGCTGTGGAGCAGGGCTTTCGCCAAG
GGTGTGTGCCCTTTTCAATATCTTCTTCACGCCGGTAATAAACGTGGCCT
ACACGTGTTTCAAGGCAGATAGCGACATCATGGACTCCTTGGTCCACCTC
AGGATGAAAATGAGGGTGGGGTGGCGGGGGATAGCAACCACCGGAGAGTC
AATAGCCTTGACGACGTCGCTGTGGGGCATGCTATACGCTAACGATGTTG
GAGTGGTCTAATGTGCAGCGTTTGGTCTCACCGTATCGGAGGCCAAAACT
GAGATCATGTATTTACGCATGAAGGGGATGCCGGAGGTCACAGCGTAGAA
GCAGCCGGCCAAGTGTACAAACAAACGAACGAGTTTGTATACCTCGGGGG
GACGTCAACCACAACGCTGACCTGTCCATCGAGGTCAGTCGGCGCATACG
CAACGCATGGTGGGTCTTCCGGAAGTACACCCTCGAACAGTACGACCGAC
CCAGCACCTCCCTGGAGCTCAAAATCCAGATGCTGAAAGCCGAGGTCGAG
ACAATGCTGTACGGCTGCGTCACGTGGAGCCCACGTGCAAGCCACTACGG
CACGCTGCGCAGAGCCCTCCACAGCTTCTTGACTCGCTGCATCGGTTGGC
GAAAGAGCAATCGCGCCGATCACACGATCTCCTATCTGGACATCCTCATG
TAGGTGGGAAGTGAGAGCATCGAGACGATCATGTGCAGGAGACGGATCTT
GTTCGCGGGATTTGTGGCGTGCATGGACGACACGAGCCTACCGAAGTGCG
TGATGTTCGAATAATCATGGGGGGCGCGGGCTGCGTGGGAGGGAAAGAAA
AAGAGTGGATGGGGTGTCTTCTTGAAGATCTCAAATATTTCGGTATCAAC
GCTGACCAATGGACGATTGCAGCCCAGGACGAGGGGGAGTGGCGCAGGAC
AGCGGTACGAGGGGCGGAACATTTCATGAATAATTGGATCGCTGCAGAGA
ACGTCAGGACTGGATTACGGCATGCACTAGCATGTCCGAACGTGACGGGG
AGGATCATGGAGGAGATAGCCCAATACAGCCGTACTCGTGCTGGTTTGAT
CGCCATAGTTGATTAGCCACAAGTCTCGCGAACTAATCCCCCGGGCGGTT
TTTGCTTGCCGATGTTATGTTGCCTTTCTCTAGCGTTACTTTTTTCTTCG
TCTTGGTTTTCTTTCGTTTTCGTCTTTTTTTCCTTCCATTGAACCCGTGA
CTCTTCGTTCAATCGTTCTCCGATAGACTTGCGTCCCGAGAGCCACACGC
AGTTCGTTAAAAACTGTTTGTGTTCTCTTTTTTGTGTTTCGTTCTTTTTC
GTTTGAGAAGTCACTTTTTCCGAGTATTTGTATAATGCACCATTGCCGTT
TCCTTTGTATTGGAGAGTACGTTGAACGCTTTTTGCTCTCGGGTGGTGTT
TTTTCTACCTAGTGACCACGGGTTGGATTTTGAAATCAGCTTATGTGGGA
ATTGAATCAATAAAAAAAATCAGATTGTAGAAACTTTGTGCGTGTCCCCT
TGTCCGTCTCGGAGTATCGAAGCTCCCTCCAGTTGCAAAACAACCGAAAT
TCTAAATTACCACTTTCCAGTATCTCGTTGCTGTTGGTGGATGTCTTTCT
CCGGGTGTGCTACAACGGATGGCAGGCATCGACAGACGGGTACAAGCGGA
GCTAAAGAAGAGAGAAAGCGCTACGCCCGAAGGGGTGGACCACCGTAACA
AGAAAATATATGACGTCAAAAGTGCCGAGGCGCGCAAGATCTTGGCCAAG
CAGAAGGTGCAGGGTTATACTCCATCATTCGGGTACATCGAGAAGGTCAA
CTATCTCGACTTGTACATCCCAGTCCCCGCGGTAAGCATGCATGATCTGC
GAGCGGGGGATACGTAAATACCATACAGGCATATCTCGAACTGAACCTCC
TCTAATAACTGAATTTAGAAAACGTCGAAGTGATCCGGATTCCGACTTTT
TCACGCTGAGTTTCCGCGGTTTCAGCCACGATTTGAAATTCGACCCCATG
TGCTTTCACTGTAACCGTTGACGTTTTTTAATCTTCCGTTCGTTAATGTC
ACGCGCTTTGGTAAGGGAACTCGAGCGAAGGACGTGACGTGCGAAATTCA
CCCGGATCGCCTGATGGTCAAGGTGGAAGATATGGGCATCGTAGCGGAGG
GATACTTCGAGGAAAGGGTCGCCCTCGATGGCTGTTACTGGCTAATGACA
AACTTGTCGCTGGATTATCCCTCTACCGTGGTGAGCGCGAAGGGGGAAGA
TGTTCGTCAGGGTCCACGAGACAAAGGGGAAACGTGTGTTCAAGTGTTTT
TGGAAAAGCGGAAGCCATACGACACCCTCTGGCAAAACATTTTCCGACCA
AAATAAGATGGTGCGGATATCGACAAGCGCTGATGTACGAAGGGTAGGCA
GCGAGTGAAAAAACAGGAAGCCATTGTGCTTGCGAACCACTCTTCCAGGG
GGTAGAGCTACTGGAGGGAATATCCCCCTTGACAAATTCATGGCATCCTT
TTATTTAGGCTGCCAGGATCGGGCGTGCTTGCTCTGCTTTGTACCGGAGT
TTTTGTCTCCCTGAACAAGCTCTTAATAGTTGGGGATGAACTACCACTTC
ACCCCCGCCTGAATCCTACAGAGAAGAAATACCACCACGAGTAAATAAAG
TAAGATGAAAACGCAAACACGTTGAAGGGTCATGTAATGAAGCAAGCGCT
CGACCTTTTCCTCTTCAACGTTTTTAGCCAAGCTGTAGCGACACTTTACA
ACCTTGATTGTAGGAATTCCCTGCTGAAATGGCAATGTGGAAATTAGTCA
CCTTTGGTGACTCAAGTGACCGAAAACCCGCTGCCGATATCACCAGGTTC
CCAATGCAATCAGCAGGATATGTTGACTGAGAGATGTATCTTCTTTGATG
ATGTTGCATTTTGTCAAAGTACCTACCATGTATTACTTACACCTGGAGGG
GAAAGCCCCTGGGCACGCCGAATAAATATCATATCTCTGATTCAAATACT
GTGCATTATTTAATCTCCGAAGTTCGATGTTCCACATCGATAGCCTAGGC
TCATGGAGAGTGTCTTCTTTCTAAATGAGCAGTGGACTTGGCTTGGAAAA
GGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig16639:246..7248+

>mRNA_H-elongata_contig16639.4171.1 ID=mRNA_H-elongata_contig16639.4171.1|Name=mRNA_H-elongata_contig16639.4171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2772bp|location=Sequence derived from alignment at H-elongata_contig16639:246..7248+ (Himanthalia elongata Himel1 dioecious)
ATGATAGGAATTGGACGTGTGCGTGAGCTACGGCATTGTAGATGGCACCA
TGACTTCGTGTCAATCGCATCGAAGTCGTTTAGCGTGTGGTTGATGGTAT
CTCTGGCCCGATGGTCAAGCGGCTTTGTACTTGTCGGGTGTCCGACCCCT
TCTTCTTCGCAGTCCAAGGCCTCTTCGAGGTGGACGCATTCTGTGAAGCA
GCTTCCGCTAATCAAATGATAGGAATTGGACGTGTGCGTGAGCTACGGCA
TTGTAGATGGCACCATGACTTCGTGTCAATCGCATCGAAGTCGTTTAGCG
TGTGGTTGATGGTATCTCTGGCCCGATGGTCAAGCGGCTTTGTACTTGTC
GGGTGTCCGACCCCTTCTTCTTCGCAGTCCAAGGCCTCTTCGAGGTGGAC
GCATTCTGTGAAGCAGCTTCCGCTAATCAAGCTTGCATGCCATCGACGAG
CCTCGCACCCACTACGATGTATTGAAAAATCACACACAAAGCCGTCCACT
GGCAGCTCGTTTCAATTCGAAAGAGGAGTAAATTTCGTATGGAGGGGGAG
AAGGTTCTCTCATGTGCGGCTGTTGGCGAAGGCGGTGGAGAGAAATGAGG
ATCCCCTGGAACGTTTGAACTTGGAAGAGTTCACTGATATATCGGAAGGG
CGAAAAACATGCTTGAAGCGGGTAGACCACCCCGGCTCTGAAATAGACGG
GAACCCAGCGAAGGGATCAAAGGCTTGCATGCCATCGACGAGCCTCGCAC
CCACTACGATGTATTGAAAAATCACACACAAAGCCGTCCACTGGCAGCTC
GTTTCAATTCGAAAGAGGAGTAAATTTCGTATGGAGGGGGAGAAGGTTCT
CTCATGTGCGGCTGTTGGCGAAGGCGGTGGAGAGAAATGAGGATCCCCTG
GAACGTTTGAACTTGGAAGAGTTCACTGATATATCGGAAGGGCGAAAAAC
ATGCTTGAAGCGGGTAGACCACCCCGGCTCTGAAATAGACGGGAACCCAG
CGAAGGGATCAAAGGTGAAAGTGCGCTACACCATGAGGCTTTTTGGTGGG
AACGAGATCTCTTCCAGTGGAGGCGAGGGCAGCAAACCTTTTGAGTTCTT
CCTGGTGAAAGTGCGCTACACCATGAGGCTTTTTGGTGGGAACGAGATCT
CTTCCAGTGGAGGCGAGGGCAGCAAACCTTTTGAGTTCTTCCTGGGCAAG
TGGCCAAGCCAGGTCATTTTCGGATGGGATAAAGCCGTGTCGACGATGCA
CAAAGGCGAGATAGTCACCCTCGTCTGTGGGCCACAGTACGCGTTCGGCG
CGGCCGGTGCACCACCCAAGATTCCCCCTAACGCCACGGTAGAGACTACG
CTCGAGCTCCTTGACTGGCTCGATCTCGCCGCGACGTACAACGCCATTCC
GGGCAAGATGGAGACAGACTCCGAGCTGAGGAAGAGATGGGGCGAGGAGT
TGGCTAACGGCACCAGCCCTATGCGCACAGAAGCAGGGCAAGTGGCCAAG
CCAGGTCATTTTCGGATGGGATAAAGCCGTGTCGACGATGCACAAAGGCG
AGATAGTCACCCTCGTCTGTGGGCCACAGTACGCGTTCGGCGCGGCCGGT
GCACCACCCAAGATTCCCCCTAACGCCACGGTAGAGACTACGCTCGAGCT
CCTTGACTGGCTCGATCTCGCCGCGACGTACAACGCCATTCCGGGCAAGA
TGGAGACAGACTCCGAGCTGAGGAAGAGATGGGGCGAGGAGTTGGCTAAC
GGCACCAGCCCTATGCGCACAGAAGCAGGCATCGACAGACGGGTACAAGC
GGAGCTAAAGAAGAGAGAAAGCGCTACGCCCGAAGGGGTGGACCACCGTA
ACAAGAAAATATATGACGTCAAAAGTGCCGAGGCGCGCAAGATCTTGGCC
AAGCAGAAGGTGCAGGGTTATACTCCATCATTCGGGTACATCGAGAAGGT
CAACTATCTCGACTTGTACATCCCAGTCCCCGCGGCATCGACAGACGGGT
ACAAGCGGAGCTAAAGAAGAGAGAAAGCGCTACGCCCGAAGGGGTGGACC
ACCGTAACAAGAAAATATATGACGTCAAAAGTGCCGAGGCGCGCAAGATC
TTGGCCAAGCAGAAGGTGCAGGGTTATACTCCATCATTCGGGTACATCGA
GAAGGTCAACTATCTCGACTTGTACATCCCAGTCCCCGCGGGAACTCGAG
CGAAGGACGTGACGTGCGAAATTCACCCGGATCGCCTGATGGTCAAGGTG
GAAGATATGGGCATCGTAGCGGAGGGATACTTCGAGGAAAGGGTCGCCCT
CGATGGCTGTTACTGGCTAATGACAAACTTGTCGCTGGATTATCCCTCTA
CCGTGGTGAGCGCGAAGGGGGAAGATGTTCGTCAGGGTCCACGAGACAAA
GGGGAAACGTGTGTTCAAGTGTTTTTGGAAAAGCGGAAGCCATACGACAC
CCTCTGGCAAAACATTTTCCGACCAAAATAAGGAACTCGAGCGAAGGACG
TGACGTGCGAAATTCACCCGGATCGCCTGATGGTCAAGGTGGAAGATATG
GGCATCGTAGCGGAGGGATACTTCGAGGAAAGGGTCGCCCTCGATGGCTG
TTACTGGCTAATGACAAACTTGTCGCTGGATTATCCCTCTACCGTGGTGA
GCGCGAAGGGGGAAGATGTTCGTCAGGGTCCACGAGACAAAGGGGAAACG
TGTGTTCAAGTGTTTTTGGAAAAGCGGAAGCCATACGACACCCTCTGGCA
AAACATTTTCCGACCAAAATAA
back to top