mRNA_H-elongata_contig166335.4168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166335.4168.1
Unique NamemRNA_H-elongata_contig166335.4168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166335.4168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166335contigH-elongata_contig166335:649..1182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size535
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.8444102-UTR-H-elongata_contig166335:648..8101622929973.8444102-UTR-H-elongata_contig166335:648..810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig166335 649..810 +
1691679230.3722742-UTR-H-elongata_contig166335:648..8101691679230.3722742-UTR-H-elongata_contig166335:648..810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig166335 649..810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.8605254-CDS-H-elongata_contig166335:810..11821622929973.8605254-CDS-H-elongata_contig166335:810..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166335 811..1182 +
1691679230.380687-CDS-H-elongata_contig166335:810..11821691679230.380687-CDS-H-elongata_contig166335:810..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166335 811..1182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166335.4168.1prot_H-elongata_contig166335.4168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166335 811..1182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166335.4168.1

>prot_H-elongata_contig166335.4168.1 ID=prot_H-elongata_contig166335.4168.1|Name=mRNA_H-elongata_contig166335.4168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MCNLINTHTHKNTHTHTCQNQTYLGHEGLRQAHLPIREGGLRLTSSRSIR
RIQHRSETHPNESQHLVQGTEIARLRRRLSFVLQHALSFRTRHHLCKQGV
ALASTRQPQSQGPAFVQAHRTGRT
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mRNA from alignment at H-elongata_contig166335:649..1182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166335.4168.1 ID=mRNA_H-elongata_contig166335.4168.1|Name=mRNA_H-elongata_contig166335.4168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig166335:649..1182+ (Himanthalia elongata Himel1 dioecious)
GCACCCCTGGTCTCATACAAAATGGCGCTTCTTACAAGCGGGTCAGTACT
CAGTACTATTCTCTGCTATATGTTATAACCATACACACACACCACACACA
AAGAGGAGGATCAATACGAGTGGCATAGAAGGACTAGGACGACAGGGCGG
GATTGCGCGGTTATGTGCAATTTAATCAATACACACACACACAAAAACAC
ACACACACACACGTGCCAAAATCAGACCTACCTAGGGCACGAGGGCCTAC
GGCAGGCCCACCTGCCAATCCGAGAAGGCGGCCTTAGGCTTACCAGCAGC
AGATCCATCAGACGGATACAGCACAGGTCGGAGACACACCCCAACGAGTC
CCAACATCTGGTGCAAGGGACGGAAATAGCACGTCTTCGGCGGCGATTAT
CTTTTGTTTTACAACATGCACTTTCATTCCGCACGCGTCACCATCTCTGC
AAACAGGGGGTGGCGCTTGCGAGCACCCGACAGCCCCAGTCGCAAGGACC
GGCGTTCGTGCAAGCGCATCGTACCGGGCGGACA
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Coding sequence (CDS) from alignment at H-elongata_contig166335:649..1182+

>mRNA_H-elongata_contig166335.4168.1 ID=mRNA_H-elongata_contig166335.4168.1|Name=mRNA_H-elongata_contig166335.4168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig166335:649..1182+ (Himanthalia elongata Himel1 dioecious)
ATGTGCAATTTAATCAATACACACACACACAAAAACACACACACACACAC
GTGCCAAAATCAGACCTACCTAGGGCACGAGGGCCTACGGCAGGCCCACC
TGCCAATCCGAGAAGGCGGCCTTAGGCTTACCAGCAGCAGATCCATCAGA
CGGATACAGCACAGGTCGGAGACACACCCCAACGAGTCCCAACATCTGGT
GCAAGGGACGGAAATAGCACGTCTTCGGCGGCGATTATCTTTTGTTTTAC
AACATGCACTTTCATTCCGCACGCGTCACCATCTCTGCAAACAGGGGGTG
GCGCTTGCGAGCACCCGACAGCCCCAGTCGCAAGGACCGGCGTTCGTGCA
AGCGCATCGTACCGGGCGGACAATGTGCAATTTAATCAATACACACACAC
ACAAAAACACACACACACACACGTGCCAAAATCAGACCTACCTAGGGCAC
GAGGGCCTACGGCAGGCCCACCTGCCAATCCGAGAAGGCGGCCTTAGGCT
TACCAGCAGCAGATCCATCAGACGGATACAGCACAGGTCGGAGACACACC
CCAACGAGTCCCAACATCTGGTGCAAGGGACGGAAATAGCACGTCTTCGG
CGGCGATTATCTTTTGTTTTACAACATGCACTTTCATTCCGCACGCGTCA
CCATCTCTGCAAACAGGGGGTGGCGCTTGCGAGCACCCGACAGCCCCAGT
CGCAAGGACCGGCGTTCGTGCAAGCGCATCGTACCGGGCGGACA
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