mRNA_H-elongata_contig16622.4163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16622.4163.1
Unique NamemRNA_H-elongata_contig16622.4163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16622.4163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16622contigH-elongata_contig16622:2716..3179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size464
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16622.4163.1prot_H-elongata_contig16622.4163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16622 2843..3142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.2310185-UTR-H-elongata_contig16622:2715..28421622929973.2310185-UTR-H-elongata_contig16622:2715..2842Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16622 2716..2842 +
1691679230.214292-UTR-H-elongata_contig16622:2715..28421691679230.214292-UTR-H-elongata_contig16622:2715..2842Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16622 2716..2842 +
1622929973.2630055-UTR-H-elongata_contig16622:3142..31791622929973.2630055-UTR-H-elongata_contig16622:3142..3179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16622 3143..3179 +
1691679230.2297814-UTR-H-elongata_contig16622:3142..31791691679230.2297814-UTR-H-elongata_contig16622:3142..3179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16622 3143..3179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.2459867-CDS-H-elongata_contig16622:2842..31421622929973.2459867-CDS-H-elongata_contig16622:2842..3142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16622 2843..3142 +
1691679230.2224631-CDS-H-elongata_contig16622:2842..31421691679230.2224631-CDS-H-elongata_contig16622:2842..3142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16622 2843..3142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16622.4163.1

>prot_H-elongata_contig16622.4163.1 ID=prot_H-elongata_contig16622.4163.1|Name=mRNA_H-elongata_contig16622.4163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MVTFSHIAESGSGSASSVPGGAGVKSTTAHASRNETEGERYQFEEPKGYG
RQRGQEGRVCRRGFPDGGMDGINREKNHIAPQQSKILQIPCRSWRSLML*
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mRNA from alignment at H-elongata_contig16622:2716..3179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16622.4163.1 ID=mRNA_H-elongata_contig16622.4163.1|Name=mRNA_H-elongata_contig16622.4163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=464bp|location=Sequence derived from alignment at H-elongata_contig16622:2716..3179+ (Himanthalia elongata Himel1 dioecious)
CTACCCTGACCCCCTACACTCAAAACCTCATCGAATTATCAGATATAGTC
AAATTCTGTGGGTGGAGAGTGTTATAAGGACTAATTACCGAGTTGTGACT
GTCAATTGACTTTTACGCTGTGATGCAATGGTTACCTTTTCACACATCGC
CGAGAGTGGTTCGGGCTCGGCCTCTAGTGTCCCCGGCGGCGCCGGGGTGA
AATCGACGACGGCTCATGCGAGCCGAAATGAGACCGAGGGGGAGAGGTAC
CAGTTCGAGGAGCCGAAGGGCTATGGCCGGCAACGCGGCCAAGAAGGCCG
CGTTTGTCGGCGTGGATTCCCTGACGGCGGAATGGATGGCATCAATAGAG
AGAAAAATCATATAGCGCCCCAACAATCGAAAATCTTGCAGATACCGTGT
CGAAGCTGGAGAAGCTTAATGCTCTAGCCTGCAACGCTCACATCCTCGTG
CGAGCGGGTTTCAA
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Coding sequence (CDS) from alignment at H-elongata_contig16622:2716..3179+

>mRNA_H-elongata_contig16622.4163.1 ID=mRNA_H-elongata_contig16622.4163.1|Name=mRNA_H-elongata_contig16622.4163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig16622:2716..3179+ (Himanthalia elongata Himel1 dioecious)
ATGGTTACCTTTTCACACATCGCCGAGAGTGGTTCGGGCTCGGCCTCTAG
TGTCCCCGGCGGCGCCGGGGTGAAATCGACGACGGCTCATGCGAGCCGAA
ATGAGACCGAGGGGGAGAGGTACCAGTTCGAGGAGCCGAAGGGCTATGGC
CGGCAACGCGGCCAAGAAGGCCGCGTTTGTCGGCGTGGATTCCCTGACGG
CGGAATGGATGGCATCAATAGAGAGAAAAATCATATAGCGCCCCAACAAT
CGAAAATCTTGCAGATACCGTGTCGAAGCTGGAGAAGCTTAATGCTCTAG
ATGGTTACCTTTTCACACATCGCCGAGAGTGGTTCGGGCTCGGCCTCTAG
TGTCCCCGGCGGCGCCGGGGTGAAATCGACGACGGCTCATGCGAGCCGAA
ATGAGACCGAGGGGGAGAGGTACCAGTTCGAGGAGCCGAAGGGCTATGGC
CGGCAACGCGGCCAAGAAGGCCGCGTTTGTCGGCGTGGATTCCCTGACGG
CGGAATGGATGGCATCAATAGAGAGAAAAATCATATAGCGCCCCAACAAT
CGAAAATCTTGCAGATACCGTGTCGAAGCTGGAGAAGCTTAATGCTCTAG
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