mRNA_H-elongata_contig166099.4160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166099.4160.1
Unique NamemRNA_H-elongata_contig166099.4160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: A0A6H5JK74_9PHAE (CBF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK74_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.250e-24
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    7 SGSVVHPLWEASLLRSHVHPSVSKFAEGLVSRPK-HAVEYRGDPLADFALMPFLDRMAYRNPKARD 201
            +G  V PLWEASLLRSHVHPSVS+FA  LVS+ + HAV+Y+GDPLAD ALMPFL+RMAY+NPKARD
Sbjct:   58 AGGEVQPLWEASLLRSHVHPSVSRFAGSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 123          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.850e-24
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1
Query:   10 GSVVHPLWEASLLRSHVHPSVSKFAEGLVSRPK-HAVEYRGDPLADFALMPFLDRMAYRNPKARD 201
            G  V PLWEASLLRSHVHPSVS+FA+ LVS+ + HAV+Y+GDPLAD ALMPFL+RMAY+NPKARD
Sbjct:  827 GGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 891          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.610e-15
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   28 LWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFALMPFLDRMAYRNPK 192
            LWEA+ LR H HPSV+ FA  L++ P H + Y+GDPL DF LMPFLDR+AYRN K
Sbjct:  869 LWEATQLRWHYHPSVAHFALELLTPPGHGIRYKGDPLVDFGLMPFLDRLAYRNAK 923          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: A0A7R9Y8A0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8A0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.390e-14
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   25 PLWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFALMPFLDRMAYRNPKARDPTKHVGVVG 228
            PL+E  +L  HVHPSV+ F+EG++    H + Y GDPL DFAL PFL+R A+RNPK RD  +   V G
Sbjct:  380 PLFELGMLYKHVHPSVTAFSEGILLHVDHRLSYEGDPLKDFALGPFLNRFAFRNPKKRDIQRLRSVAG 447          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: A0A7S4K5P2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K5P2_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 4.220e-11
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   25 PLWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFALMPFLDRMAYRNPKAR 198
            P WE SLL SH HPSV K+AE L +   + +EY+GDP+ D +L+ FLDR ++RNPK +
Sbjct:   14 PTWELSLLVSHYHPSVRKWAELLSTG--NPIEYKGDPILDMSLIAFLDRYSFRNPKRK 69          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: A0A7S3CJN7_9SPIT (Hypothetical protein n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CJN7_9SPIT)

HSP 1 Score: 64.7 bits (156), Expect = 2.560e-10
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   25 PLWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFALMPFLDRMAYRNPKARD 201
            PL+E + L +H HP+V  +A+ L+     AVEY GDPL DFAL  FLDR+AY+ PK+++
Sbjct:    9 PLFELATLSTHCHPTVRMWAQQLLDHQTIAVEYGGDPLLDFALSNFLDRIAYKEPKSQE 67          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: K0SQJ6_THAOC (CBF domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQJ6_THAOC)

HSP 1 Score: 63.9 bits (154), Expect = 5.600e-10
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   28 LWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFALMPFLDRMAYRNPKARD 201
            LWE SLL  H HPS++KF     S     + Y+ DPL DFAL PFLD+ A+RNPK+ D
Sbjct:  590 LWELSLLAHHFHPSITKFT----SNSDGKILYKEDPLKDFALAPFLDKFAFRNPKSLD 643          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: A0A7R9Z0Z7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z0Z7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.090e-9
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   28 LWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFALMPF 162
            LWE +LLR+H HPSV+KFA  L     + VEY GDPL DFALMPF
Sbjct:   64 LWEVALLRTHFHPSVTKFATAL----PNPVEYSGDPLRDFALMPF 104          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: A0A443S664_9ACAR (CCAAT/enhancer-binding protein zeta-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S664_9ACAR)

HSP 1 Score: 61.6 bits (148), Expect = 3.570e-9
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   28 LWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFALMPFLDRMAYRNPK 192
            LWE   L  H HP+V+ FA+ ++    +A+EY GDPLADF +  FLDR  YRNPK
Sbjct:  273 LWETVNLSRHYHPTVALFADSVLRN--NAIEYDGDPLADFTIKNFLDRFVYRNPK 325          
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Match: A0A2G8LPV8_STIJA (CBF domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LPV8_STIJA)

HSP 1 Score: 60.1 bits (144), Expect = 1.290e-8
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    7 SGSVVHPLWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFALMPFLDRMAYRNPKARDPT 207
            SGS     WE   L  H HPSVS+FAE +++     + Y G+PL DF +M FL+R  Y+NPK+R  T
Sbjct:  619 SGSEKAIPWELMKLAGHFHPSVSQFAEKILTG--ETIMYDGNPLDDFTIMKFLNRFVYKNPKSRSET 683          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166099.4160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK74_9PHAE3.250e-2475.76CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LPZ6_ECTSI4.850e-2476.92CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZC94_9STRA5.610e-1563.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9Y8A0_9STRA1.390e-1452.94Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4K5P2_9EUKA4.220e-1153.45Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S3CJN7_9SPIT2.560e-1050.85Hypothetical protein n=1 Tax=Strombidium rassoulza... [more]
K0SQJ6_THAOC5.600e-1053.45CBF domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7R9Z0Z7_9STRA2.090e-964.44Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A443S664_9ACAR3.570e-952.73CCAAT/enhancer-binding protein zeta-like protein (... [more]
A0A2G8LPV8_STIJA1.290e-846.27CBF domain-containing protein n=1 Tax=Stichopus ja... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166099contigH-elongata_contig166099:985..1239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929972.8810823-CDS-H-elongata_contig166099:984..12391622929972.8810823-CDS-H-elongata_contig166099:984..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166099 985..1239 -
1691679230.0416262-CDS-H-elongata_contig166099:984..12391691679230.0416262-CDS-H-elongata_contig166099:984..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166099 985..1239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166099.4160.1prot_H-elongata_contig166099.4160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166099 985..1239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166099.4160.1

>prot_H-elongata_contig166099.4160.1 ID=prot_H-elongata_contig166099.4160.1|Name=mRNA_H-elongata_contig166099.4160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
HPSGSVVHPLWEASLLRSHVHPSVSKFAEGLVSRPKHAVEYRGDPLADFA
LMPFLDRMAYRNPKARDPTKHVGVVGLYLYISLS*
back to top

mRNA from alignment at H-elongata_contig166099:985..1239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166099.4160.1 ID=mRNA_H-elongata_contig166099.4160.1|Name=mRNA_H-elongata_contig166099.4160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig166099:985..1239- (Himanthalia elongata Himel1 dioecious)
CATCCTTCAGGCTCTGTAGTGCATCCTCTCTGGGAAGCGTCGCTGCTTCG GTCCCACGTTCACCCGTCGGTGTCGAAGTTCGCGGAAGGTCTGGTCTCCC GTCCGAAGCACGCCGTGGAGTACCGTGGAGACCCTCTTGCGGATTTCGCG CTCATGCCTTTTCTCGACAGGATGGCCTATCGGAACCCCAAGGCTCGGGA CCCTACCAAGCACGTTGGAGTGGTGGGTCTCTATCTCTATATTTCTCTGT CATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig166099:985..1239-

>mRNA_H-elongata_contig166099.4160.1 ID=mRNA_H-elongata_contig166099.4160.1|Name=mRNA_H-elongata_contig166099.4160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig166099:985..1239- (Himanthalia elongata Himel1 dioecious)
CATCCTTCAGGCTCTGTAGTGCATCCTCTCTGGGAAGCGTCGCTGCTTCG
GTCCCACGTTCACCCGTCGGTGTCGAAGTTCGCGGAAGGTCTGGTCTCCC
GTCCGAAGCACGCCGTGGAGTACCGTGGAGACCCTCTTGCGGATTTCGCG
CTCATGCCTTTTCTCGACAGGATGGCCTATCGGAACCCCAAGGCTCGGGA
CCCTACCAAGCACGTTGGAGTGGTGGGTCTCTATCTCTATATTTCTCTGT
CATAGCATCCTTCAGGCTCTGTAGTGCATCCTCTCTGGGAAGCGTCGCTG
CTTCGGTCCCACGTTCACCCGTCGGTGTCGAAGTTCGCGGAAGGTCTGGT
CTCCCGTCCGAAGCACGCCGTGGAGTACCGTGGAGACCCTCTTGCGGATT
TCGCGCTCATGCCTTTTCTCGACAGGATGGCCTATCGGAACCCCAAGGCT
CGGGACCCTACCAAGCACGTTGGAGTGGTGGGTCTCTATCTCTATATTTC
TCTGTCATAG
back to top