mRNA_H-elongata_contig16609.4159.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16609.4159.1 vs. uniprot
Match: D7FIG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG4_ECTSI) HSP 1 Score: 349 bits (895), Expect = 2.600e-102 Identity = 232/616 (37.66%), Postives = 325/616 (52.76%), Query Frame = 1
Query: 1 VKMFGTGEMLLQADAPTDLASMIDHANRFRDLELAVSKEMARVKQKSLIDKKNRMEVNTSSNRLLVYMRKIHRTMILHRELLRSLPKLGTQKEESRILDLDRVLLDIPLIMFMTMFGYPPEYLHARELHCVLKKAENEKASVRGAPRAIWELMRHNGWFKEAIKSSLQILHDMSVLVKIDASALASYNDRATAGEAG---------------------------PLVEPMAYSHASLNPGVIEGFEASG-----SGEDSAIKIYDEVAKAVAGKKANKGD-------PTARFTKHVSGSERGMRRDKKARSAAAQALLQAKYPPAEMKLGLGWACLRMDLTVFLADKTIA--KRVTDDVQWCEFWTCYQTHGPGMK-ETMAGRDEGLDIELKTTKRHCIAKAVNKADTLSSAQVPQLADPEEWGVDDSNATVGVYTS-WHKSPKAWTQEEDVELLKIVSKAYRDPRKDMSRRNSPGRPRTSRVHKESLQQFAKYNNRSLEACWKRYQKLGE---RVGGNCPSLPLPVIERKRTRKET--NADD--------LEPNERARRNKIKRGRQSGLLARDGMLHLSELNPSRLSLTDLTKARNKAKEEAAIAKAAGFEWVN 1680
+K FG GEM+L DA TD S+ ++A F +E AV +E R+K + + S R L+Y RK+HRTMILHRELLR L +L + SR LDLDRV+LD L F+TMFG PP YLH++E++ VLKKAE++KA++R APRAIWE+MR W+KEA+ S+LQ LHDM +L K+D+ A S P +P AY HA+ I E +G SG D+ KAV + + D P AR T RG+ RDKKARSAAA+ALL+ K PP E ++GLGWA L +D+ ++ DK++A +RV +QW FW YQ G G + + +A D +++ L T+ + L A+VP L +P+EWGVDD + WH + K WT E+D+ L+ V P S+ + PGR S ++++Q A +S EACW+RY+ + + + +LPLP R R +K + N DD GR++GLLA G L +++L + ++L ++R KA+EEAA+AKAAGFEWVN
Sbjct: 559 MKTFGHGEMVLLPDAKTDPESLAEYAENFYAVETAVHRESTRIKAGERYGAQYSWDGVKSPERFLIYKRKMHRTMILHRELLRCLTRLPGHRVGSRALDLDRVILDTQLSTFITMFGCPPNYLHSKEMYKVLKKAESKKATIRQAPRAIWEIMRTVPWYKEALMSTLQTLHDMRILTKMDSPAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPSSLPGEDPFAYRHATAQVVPISTDETTGKAVAVSGGGDGSAAIDKFHKAVEAARVARQDALQYSRTPVARDT------TRGISRDKKARSAAAEALLREKSPPKEFRMGLGWAVLHVDVVIYTEDKSMAQPRRVPGHMQWSNFWNTYQFFGTGQRAKELAKHDSVMNVALGVTEEVAQVAHPLASWLLKKARVPHLTNPKEWGVDDDEPEEEEEVNRWHWAKKLWTAEQDMALILAVKNFLPKPTYPNSKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMRTRNKKRSLDNEDDGGXXXXXXXXXXXXXXXXXXXXGRRTGLLAIQGPLMMADLGHLQFRASELNESRKKAREEAALAKAAGFEWVN 1168
BLAST of mRNA_H-elongata_contig16609.4159.1 vs. uniprot
Match: A0A6H5JZA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA5_9PHAE) HSP 1 Score: 279 bits (714), Expect = 3.310e-78 Identity = 211/613 (34.42%), Postives = 292/613 (47.63%), Query Frame = 1
Query: 1 VKMFGTGEMLLQADAPTDLASMIDHANRFRDLELAVSKEMARVKQKSLIDKKNRMEVNTSSNRLLVYMRKIHRTMILHRELLRSLPKLGTQKEESRILDLDRVLLDIPLIMFMTMFGYPPEYLHARELHCVLKKAENEKASVRGAPRAIWELMRHNGWFKEAIKSSLQILHDMSVLVKIDASALASYNDR--------------------------ATAGEAGPLVEPMAYSHASLNPGVIEGFEASG-----SGEDSAIKIYDEVAKAVAGKKANKGD-------PTARFTKHVSGSERGMRRDKKARSAAAQALLQAKYPPAEMKLGLGWACLRMDLTVFLADKTIA--KRVTDDVQWCEFWTCYQTHGPGMKETMAGRDEGLDIELKTTKRHCIAKAVNKADTLSSAQVPQLADPEEWGVDDSNATVGVYTSWHKSPKAWTQEEDVELLKIVSKAYRDPRKDMSRRNSPGRPRTSRVHKESLQQFAKYNNRSLEACWKRYQKLGE---RVGGNCPSLPLPVIERKRTRKET--NADD--------LEPNERARRNKIKRGRQSGLLARDGMLHLSELNPSRLSLTDLTKARNKAKEEAAIAKAAGFEWVN 1680
+K FG GEM+L DA TD S+ ++A F +E A + A+ + S R L++ RK+ RTMILHRELLR L +L Q+ SR LDLDRV+LD+ L F+TMFG PP YLH++E++ VLKKAE +KA++R APRAIWE+MR W+KEA+ S+LQILHDM +L K+D+ A S + P +P AY HA+ I E +G SG D+ KAV + + D P AR T RG+ RDKKARSAAA+ALL+ PP E ++GLGWA L +D+ ++ DK +A +RV +QW FW YQ VP L +P+EWGVDD ED+ L+ V P ++ + PGR S ++++Q A +S EACW+RY+ + + + +LPLP R R +K N DD + ++ ++GR++GLLA G L +++ KA+EEAA+AKAAGFEWVN
Sbjct: 617 MKTFGHGEMILLPDAKTDPESLAEYAENFYAVEAAGERYGAQYSWDGV----------KSPERFLIHKRKMQRTMILHRELLRCLTRLPGQRVGSRALDLDRVILDMQLSTFITMFGCPPNYLHSKEMYKVLKKAEAKKATIRQAPRAIWEIMRTVPWYKEALMSTLQILHDMRILTKMDSPAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPSSLPGEDPFAYRHATAQVVPISTDETTGKAVAVSGGGDGSAAIDKFHKAVEAARVARQDALQYSRTPGARDT------TRGISRDKKARSAAAEALLRENSPPKEFRMGLGWAVLHVDVVIYTEDKNMAQPRRVPGHMQWSNFWNTYQ-------------------------------------------VPYLTNPKEWGVDDDEPEXXX--------------EDMALILAVKNYLPKPTYPNTKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAKYAAHGEALPLPANMRTRNKKRPHDNEDDGXXXXXXXXXKSGSGKKENKRKGRRTGLLAIQGPLMMAK----------------KAREEAALAKAAGFEWVN 1140 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16609.4159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16609.4159.1 >prot_H-elongata_contig16609.4159.1 ID=prot_H-elongata_contig16609.4159.1|Name=mRNA_H-elongata_contig16609.4159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=558bp MFGTGEMLLQADAPTDLASMIDHANRFRDLELAVSKEMARVKQKSLIDKKback to top mRNA from alignment at H-elongata_contig16609:686..6465- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16609.4159.1 ID=mRNA_H-elongata_contig16609.4159.1|Name=mRNA_H-elongata_contig16609.4159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5780bp|location=Sequence derived from alignment at H-elongata_contig16609:686..6465- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16609:686..6465- >mRNA_H-elongata_contig16609.4159.1 ID=mRNA_H-elongata_contig16609.4159.1|Name=mRNA_H-elongata_contig16609.4159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3348bp|location=Sequence derived from alignment at H-elongata_contig16609:686..6465- (Himanthalia elongata Himel1 dioecious)back to top |