mRNA_H-elongata_contig166038.4157.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166038.4157.1
Unique NamemRNA_H-elongata_contig166038.4157.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig166038.4157.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 5.170e-25
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 LIYAEGNRRQPRGFKPVQVLATALDPRTKILYGVEEDEEDDVWKLVQEEAVKIALERRGEEKSQ 192
            LIY EG RRQP GFKPVQVLATALDPRTKILYGV+EDE+ DVWKLV+EEAVKIA+E R  E SQ
Sbjct:   62 LIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQ 125
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BLAST of mRNA_H-elongata_contig166038.4157.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.260e-22
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 LIYAEGNRRQPRGFKPVQVLATALDPRTKILYGVEEDEEDDVWKLVQEE-AVKIALERRGEEKSQ 192
            LIY EG RRQP GFKPVQVLATALDPRTKIL+GV+EDE+ DVWKLVQEE AVKIA+E R  E SQ
Sbjct:   22 LIYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKIAVETRNAENSQ 86
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BLAST of mRNA_H-elongata_contig166038.4157.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.120e-22
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 LIYAEGNRRQPRGFKPVQVLATALDPRTKILYGVEEDEEDDVWKLVQEEAVKIALERRGEEKSQ 192
            LIY EG RRQP GFKPV VLATALDPRTKI YGV+EDE+ DVWKLVQEEAVKIA+E R  E SQ
Sbjct:  261 LIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETRNAENSQ 324
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BLAST of mRNA_H-elongata_contig166038.4157.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.080e-17
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 LIYAEGNRRQPRGFKPVQVLATALDPRTKILYGVEEDEEDDVWKLVQEEAVKIALERRGEEKSQ 192
            L+Y EG RRQPRGFK  QVLATALDPR+K LYG+EE E  DVW+ V  EAVK+A+E +  E +Q
Sbjct:  260 LVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQ 323
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BLAST of mRNA_H-elongata_contig166038.4157.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.900e-15
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 LIYAEGNRRQPRGFKPVQVLATALDPRTKILYGVEEDEEDDVWKLVQEEAVKIALERRGEE 183
            L+Y EG RRQPRGFK  QVLATAL PR+K LYG+EE E  DVW     EAVK+A+E +  E
Sbjct:  288 LVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATE 348
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BLAST of mRNA_H-elongata_contig166038.4157.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.170e-12
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   28 QPRGFKPVQVLATALDPRTKILYGVEEDEEDDVWKLVQEEAVKIALERRGEEKSQ 192
            +PRGFK  QVLATALDPR+K LYG+EE E  DVW+ V  EAVK+A+E +  E +Q
Sbjct:  325 EPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQ 379
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BLAST of mRNA_H-elongata_contig166038.4157.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 6.810e-11
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 LIYAEGNRRQPRGFKPVQVLATALDPRTKILYGVEEDEEDDVWKLVQEEAVKIALERRGEEKS 189
            L Y EG RRQP+GFK  QV ATALDPR K LYG+++ E   VW+ V   AV IAL +   +K+
Sbjct:  324 LEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKA 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166038.4157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE5.170e-2581.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVE5_9PHAE1.260e-2280.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y8_9PHAE2.120e-2279.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE1.080e-1764.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE5.900e-1562.30Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE1.170e-1261.82Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI6.810e-1153.97Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166038contigH-elongata_contig166038:257..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue8.1e-09
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929972.477039-CDS-H-elongata_contig166038:256..4481622929972.477039-CDS-H-elongata_contig166038:256..448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166038 257..448 +
1691679229.852461-CDS-H-elongata_contig166038:256..4481691679229.852461-CDS-H-elongata_contig166038:256..448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166038 257..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166038.4157.1prot_H-elongata_contig166038.4157.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166038 257..448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166038.4157.1

>prot_H-elongata_contig166038.4157.1 ID=prot_H-elongata_contig166038.4157.1|Name=mRNA_H-elongata_contig166038.4157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
LIYAEGNRRQPRGFKPVQVLATALDPRTKILYGVEEDEEDDVWKLVQEEA
VKIALERRGEEKSQ
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mRNA from alignment at H-elongata_contig166038:257..448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166038.4157.1 ID=mRNA_H-elongata_contig166038.4157.1|Name=mRNA_H-elongata_contig166038.4157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig166038:257..448+ (Himanthalia elongata Himel1 dioecious)
TTAATCTACGCGGAGGGCAACAGGCGGCAACCACGCGGTTTCAAGCCTGT
GCAGGTTCTAGCAACCGCACTCGACCCTCGCACGAAGATCCTATATGGAG
TGGAGGAAGACGAGGAGGACGACGTTTGGAAGCTCGTGCAGGAAGAGGCG
GTGAAGATTGCCCTGGAACGCCGCGGTGAGGAAAAATCTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig166038:257..448+

>mRNA_H-elongata_contig166038.4157.1 ID=mRNA_H-elongata_contig166038.4157.1|Name=mRNA_H-elongata_contig166038.4157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig166038:257..448+ (Himanthalia elongata Himel1 dioecious)
TTAATCTACGCGGAGGGCAACAGGCGGCAACCACGCGGTTTCAAGCCTGT
GCAGGTTCTAGCAACCGCACTCGACCCTCGCACGAAGATCCTATATGGAG
TGGAGGAAGACGAGGAGGACGACGTTTGGAAGCTCGTGCAGGAAGAGGCG
GTGAAGATTGCCCTGGAACGCCGCGGTGAGGAAAAATCTCAGTTAATCTA
CGCGGAGGGCAACAGGCGGCAACCACGCGGTTTCAAGCCTGTGCAGGTTC
TAGCAACCGCACTCGACCCTCGCACGAAGATCCTATATGGAGTGGAGGAA
GACGAGGAGGACGACGTTTGGAAGCTCGTGCAGGAAGAGGCGGTGAAGAT
TGCCCTGGAACGCCGCGGTGAGGAAAAATCTCAG
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